TCONS_00024540 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024540
Unique NameTCONS_00024540
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024540 ID=TCONS_00024540|Name=TCONS_00024540|organism=Clytia hemisphaerica|type=transcript|length=4367bp
AATTATCACAATCatttcaccttaaagaaaaaatcaatatcTCGTTGAGG
AAATCGTTATCATTAAACATTTTCTTTACATTTAGAGGAATaagagaaaa
taataaaaactaaAGCAAGATGGATTCGAGTGAAATTAAAGTGAAAATTG
AACCCGAAAGTGAAGGAATGATTTCTGAAGAACagcaagaagcaaaagaa
gATACATCAATGGAAAATCCTGTTGAAGGAAATTTTGACATTCCTCTTGA
TGAAAAGATATTGGAAGCTGAACAGCCTGACGAAGCTCCTCCTTCAGAAG
ACACCATTCTAGACGAACAAGCGACCAACGCAGATGAAGCGGTCGTCAAA
AAGGAAGAAACTGAAGAAACNCTAGACGAACAAGCAACCAACGCAGATGA
AGCGGTCGTCAAAAAGGAAGAAACTGAAGAAACATCGAAAGAAGAAGCTC
AGCCAGAAGCAGTGGTTGATCAAGAAATGTCTCAAGAAAGTACTGCCTCT
ATCGAACCTGGGGAATTACCCGTTCAAAACGAAGGTCAAGTGAGCCAAGA
CACAGACATGAATGTGTTGGAAGCCATCTTAGGTGATGGAGATGAAGCAA
AAGATGATTTTGATAACGAAATTGCAAACACTAACAGCGCTAAGAAAGta
AAAGCAGCGACAGCGACCCCTAAGACGAGGAAAACACCAAAACGAAAGAC
AAAGAAACCGACCAAAGCAGCTGCAGCTAAAAATGGAACTGCATCTCCAG
TGTCAAAGATAGAGAGTGCCTCCGCCAACAATGCTACTCCTGATGCTCCC
AAAGATGAAATCAAACCTTCGCCTGCAAAGAAAGCAAAACTGAAAACGAC
AGCACCTGCTTCAACCACTGATAATGTCGTGAGTGATGCCACTACCAAAG
ACTCCTCTGCTGTTGCTACGACAACTACACCTGGCAAGAAAGCTGCCacc
aaaacacaaaagaaaaagaaagtggcAACGAAGGCGGCGGTGAAGAAGGA
AACCAAAAAACCGGACACTGAAACAAATGCTCAACCCACGGAGGCCGAAA
AAGAAGCAGAACTTGAGAAAAAAGTCAAGGAGCTAGAGAAAATAGTTAAG
TCAGCACCTGTCGTCGCTCCAACTGCTGATGAAAGCAAAACTGATGCCAC
CAAAGTGAAGAAGGATAAAGCTCCCAAAGCGTCACCTGCTACCAGGAAAC
GAAAAGCAAGTGATAGCGCACTAAACACTTCAAAGACTAAAGCCAACACC
TCCGTCTCTGAGGAGAAACCATTAGAAGAAGAAGTagaagaacaagaaga
agagGCCATTGAAGACGAGGAATTTTTGGACGAAGAGAACATTTTGAACG
AAgaggaagatgaagaagaagatgctGACATGAAAGTGGTGGATGGCTTC
TCTGATCACGATGGAAGCGTGTCCGATCATGGAAGCTCTTTCTCTTACTC
ACGATCGCGATCATTGTCGGGAAGCTTCTCCGTGGAATTATCAAATTTCT
CTGGATCCTCCTCACTTGACGACTTGGAAGATGACGGAGAAGGTGAcgag
aaaaagaaaacgaaaaggaagaaaaaacaCCCAAGTGACGAGAAGCACAA
AGAGTTGGTGGATCAAATGTTGAAAGGGGCAAGATACTTCATCATCAAAA
GCAATAATTATGAAAACGTTTCACTTTCAAAAGCAAAGGGCGTATGGGCG
ACACCGCCTGCCAACGAGCGAAAATTGAACGATGCTTTCAAGCATTCAAC
GAACGTTGTCTTGGTCTTCAGCGTCAAAGAAAGCGGTCGTTTTCAAGGCT
TCGCGCGTCTTGCATCCGAATCACGTCATGATGGCATCCCCGTCCCTTGG
GTCCTTCCACCAGGTTTCGATCGTCGAATTTTAGGTGGAACGTTCAAGGT
TGACTGGTTAAACAGgaAAGAAGTGACTTTTTCCAAATGCGCAAACCTCA
GGAACCCTTGGAACGAAAATAAggaagtgaaaatttgtcgTGACGGACAG
GAGCTTGAACCGAGTGTTGGTGAAGTGTTGTGCCGAATGTTTGAAGATGA
TCTGACCATTAATCTCGAACGAATACAACGTCATGCAAAACGATATAAAA
GTGGTGGCGGTGATCATAAACCTGACAGGTTACCTTCTTGTGCGTTCATC
ACAAACCTCATCTACTACTTcaacaaaaatgaacttttaatgAGAAATTT
TATCACATAGTCCTCTATGAGAACTTTATTTACAAAGTACCACATAAAAA
GTGTGCGTGTTAAAATCGTTCGCTCGGTTACAAATAGGACTAATTGTCTT
TGAGATAATATGTTACGATGCATGTTGTTAGAGTGCTCTTTATACCTCAA
ATGAACTTTCCCATACGATAAAAAGTGAAATATCACTCATATGTTGGCGT
TCAGTCAACAAGACTGTCAAATTTACCGGTTGATACAACCTTTACCGCAC
AGAGTTTCCGGTGCTTTATCAAACCTGTTACGTGTATGAACTTTTATTGC
agaagtttgttttgaaatggcCCACCTAAAGTGCCATTCGGGGTATTAAT
AATGAACTTTTTACTAGCTTTAACTTGTATAATGTGATGGTGTATCACTG
CAATCGTATTATGCTGTAGTGACGTTGTACCCTATTTTCGACAGTTCAAA
GCTTGTTGGAGTTGGTGGAGGCTCACGTCAGTGTTCAGCgatattagagt
ttgaacaactGTAACAGAGTACGACCATCCATTTGCATTGCATAAGTTTT
ATGGAAGATAATTCAAGCGGCGTGGAAGAAtggtgttttggttgttttat
CCAGAGAAATTTTCATTCAAGTTCGAGTTCAACCATTTTCGGGTTTTCCT
TAAAAGTGTtcttaagaaaaaaagaacttttgaaCTGGTGATTGGATTAT
TCTTAAGCAATACTTTGCAAGCTAATACAGACTTTTTATATGGCAATCAA
CATAGATTACTTGGTATTGCTAGTACACAGATTCCGTGGTGGTGGCGACT
GGAGAGGTGGACGTGGTGGTTTTAATAGGGGTGGACGAGGTGGAAGGGGT
GGAGGGCGTTTCCAAAGAAACAGAAGAGGCGGAGGCGTAGGTGTAGGCGG
TGGAGATTTTCGTCGTAGAAGAGGCGATGGTGGTCATCATCACAATGGAG
GTCGTTTCGGAGGTGGTCGCGGTGGCATGGATCGCCATCGAGGGCATCGG
GACAACAATCGGCACGATCACAGACGACAACAAGGCAATAATTTCATGCG
GCAACAACGTTCACGATCGCCCGATCACAGGAGATACGAGCGTGAAAATC
GTGACCGAAGACACAAAGACCGCGTTCGAGAATTTTTAAAGGAAGACAGG
TCGAAATACGGGGTACGCGAAGAGACACTTTTACACGGTTCATATTCTGA
TTACGTTCGCGAGTTTCGTCAAAAGCAAATGGGAAGCTCTTCCTCTTCGC
ACAGGAATTCTTCTTCGTATTATGGTTCATCATCAAGTTACGGTGGATCA
CACAGTAGATCGTACGATGCGAACGCAGCCTCAGCGGAGGAGTTTTTACG
CCGCTCATCACATCGATGATGACGAGACCTCCAAAagattggaagaaaaa
aaaacgaaaatccaaAACCTTTTAGCTGTAAGATTGGAGTtgttcttcaa
aaatgtttgcGAAGAGTTTGTTTTCTAAAAGGTTGTTCATTTCATGGCTT
TCCTTGGAAGTGTCAATCCCTTCTTCAACACCAAATACTTGTTTGTCAGA
AAAAGTGAGAGAAGAATGAACACGTTGTTACCGCTCAATGTCTAAATGTT
Ggctattttttaatgaaagaaatgttgttactttactttttttatgtttt
taaactttttttgtacCGGATTTAATGCTTTAGAAGCACTCGTTGAAAAA
TTATCTTTGTCATTGTGACGACTGTTGTAAacgtgattgaaattgattca
aAACCGACATGGACAGTATTAAAAAAACGTCGGCAGAACGATAGTGTACA
GATAGTTTTTATTATTGTACGGGGGACTCTCGCTAATTTGAATTACCATT
GTTAGtctctttgtaattcgaattctTCTCAGTCCCACAAAGTGGAGGCC
TTGATAAGTTAACAAAATTTATTTCCTTATTCAAATCTCAACGGTAATCG
GAACAAATCAGATTTCAAGTTCGAATTAACGAGAGCCAACAGTATCTTAG
ggtatattatttttcttttcattttagaGTTTACATTTTATTAGTAGACT
TCACACCCTTAAAAGATTTTTGGACAAAGTGTAAGAATTATGAACAAGTA
AAGAGAGcgactttttagaaaaaaattctgaCTATTCCATAGAGCATTTT
GACAAACAATTCTTGAC
Run BLAST on NCBI

transcript from alignment at sc0000502:89956..99035-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024540 ID=TCONS_00024540|Name=TCONS_00024540|organism=Clytia hemisphaerica|type=transcript|length=9080bp|location=Sequence derived from alignment at sc0000502:89956..99035- (Clytia hemisphaerica)
AATTATCACAATCATTTCACCTTAAAGAAAAAATCAATATCTCGTTGAGG
AAATCGTTATCATTAAACATTTTCTTTACATTTAGAGGAATAAGAGAAAA
TAATAAAAACTAAAGCAAGATGGATTCGAGTGAAATTAAAGTGAAAATTG
AACCCGAAAGTGAAGGAATGATTTCTGAAGAACAGCAAGAAGCAAAAGAA
GATACATCAATGGAAAATCCTGTTGAAGGAAATTTTGACATTCCTCTTGA
TGAAAAGATATTGGAAGCTGAACAGCCTGACGAAGCTCCTCCTTCAGAAG
ACACCATTCTAGACGAACAAGCGACCAACGCAGATGAAGCGGTCGTCAAA
AAGGAAGAAACTGAAGAAACNCTAGACGAACAAGCAACCAACGCAGATGA
AGCGGTCGTCAAAAAGGAAGAAACTGAAGAAACATCGAAAGAAGAAGCTC
AGCCAGAAGCAGTGGTTGATCAAGAAATGTCTCAAGAAAGTACTGCCTCT
ATCGAACCTGGGGAATTACCCGTTCAAAACGAAGGTTTGCCTTTATTGCT
TTTTGTGAGTCTTTCGTATTTTTCATGGAATAGACTTGTTTGGGCTGGTT
TGAGACATACTCCAGCATCACTTTCAACTGCCATACAAAAGTTTTTGTTC
GACCAAATTATGTCAGTCCTAGTAAAGTTGCTATAACAATTGAAAAACCT
TTGACTCTATGTTTTTTGCAGGTCAAGTGAGCCAAGACACAGACATGAAT
GTGTTGGAAGCCATCTTAGGTGATGGAGATGAAGCAAAAGATGATTTTGA
TAACGAAATTGCAAACACTAACAGCGCTAAGAAAGGTATCATTAAAATGT
ATAAATCCCAGAAGGCTTAAACAGTCCTCACAATTACTAAACATTTTGAC
AAACACTGCTGCAAATAGAACATCTGGTCTCTAAAACACAAAAAAACATC
TGTCAAAAAAAGTTTTTCATTTTTATAGTAAAAGCAGCGACAGCGACCCC
TAAGACGAGGAAAACACCAAAACGAAAGACAAAGAAACCGACCAAAGCAG
CTGCAGCTAAAAATGGAACTGCATCTCCAGTGTCAAAGATAGAGAGTGCC
TCCGCCAACAATGCTACTCCTGATGCTCCCAAAGATGAAATCAAACCTTC
GCCTGCAAAGAAAGCAAAACTGAAAACGACAGCACCTGCTTCAACCACTG
ATAATGTCGTGAGTGATGCCACTACCAAAGACTCCTCTGCTGTTGCTACG
ACAACTACACCTGGCAAGAAAGCTGCCACCAAAACACAAAAGAAAAAGAA
AGTGGCAACGAAGGCGGCGGTGAAGAAGGAAACCAAAAAACCGGACACTG
AAACAAATGCTCAACCCACGGAGGCCGAAAAAGAAGCAGAACTTGAGAAA
AAAGTCAAGGAGCTAGAGAAAATAGTTAAGTCAGCACCTGTCGTCGCTCC
AACTGCTGATGAAAGCAAAACTGATGCCACCAAAGTGAAGAAGGATAAAG
CTCCCAAAGCGTCACCTGCTACCAGGAAACGAAAAGCAAGTGATAGCGCA
CTAAACACTTCAAAGACTAAAGCCAACACCTCCGTCTCTGAGGTAATGGA
GGTAAAACCATCAGTTATCACATCTTTAAATGGTTCAATGTAAATTTCCT
CAGTAATATAGGTGATTGAATATCTTCTCTTCCCAATATATCCTAAAAAT
CTTGCAGATAGATTTTTGTACAAAATGAATGTTTATCATTTTTATGTTTG
CAGGAGAAACCATTAGAAGAAGAAGTAGAAGAACAAGAAGAAGAGGGTGA
GCTAACTTTTGCGTTCTACCAAGTGTTTTAAGCTTGTTTGCTTTAGATTC
TCCGTCGTTCTCAGTCATGACCTTCCCATAGGACAAAAAATTCTCTAGGC
TACCAGCGAAAACATCTGACGAAAGTGTTAACTGATTTACCCAGCAAGAT
ATTGCATTTCACATCGAGAAATATTCTCAGTAAAAATCAAAGTTTAGAAA
TGTTTTTTTTTTTGGGAATATAATTTTTTTTTTTAACTGTAAGTTCCGAT
ACGGGCAGTATAAAAACGAAGATGACCTAGTTATCAGTTTGAACACACAT
AACACACAAATGGAAAAAAAAAAAAACATTTTTAAAAATTTTTTTTTTTA
ACTGTAAGTTCCGATACGGGCAGTATAAAAACGAAGATGACCTAGTTATC
AGTTTGAACACACATAACACACAAATGGAACAAAGAACAAAAACTCTTCA
TTTCAGCCATTGAAGACGAGGAATTTTTGGACGAAGAGAACATTTTGAAC
GAAGAGGAAGATGAAGAAGAAGATGCTGACATGAAAGTGGTGGATGGCTT
CTCTGATCACGATGGAAGCGTGTCCGATCATGGAAGCTCTTTCTCTTACT
CACGATCGCGATCATTGTCGGGAAGCTTCTCCGTGGAATTATCAAATTTC
TCTGGATCCTCCTCACTTGGTGAGTACCCTTGCTTTGAACGATTCTTTTG
TGAACAGGTCTCAAATTGGTTGAATGGGGCTGTTGCGAAGAGGTTCAAAA
AGGCTTTCGAGGACAGAGTTGAAATTAAACCATAATCATTATAAAATACT
CTGGTCTTGAATGTTTTTGTTTCTTTCTATTGTTTATAACAGTTAGAGCT
TTATTTCGTGAATGGATTTGTTTTGCACAGTTTTTGATCATGTAACTAGA
CATTTTGACAATAAAGCTATAATGATATATTACCAGACTGGAGTTTTAAA
AATAATTGAACACACATTTGTTTTGCAGACGACTTGGAAGATGACGGAGA
AGGTGACGAGAAAAAGAAAACGAAAAGGAAGAAAAAACACCCAAGTCAGT
ACACTCTTTTCCACATTGTGGCATACTCCTAATCCTTTTTCAACAAAGTC
GCTTCTAATACTTCCAGGATACCAAAAAGCATCAAGTAGCTAAATGCTCA
GAACGCATCGCGACTTTTTATTTCAAAACTCTAGATTTGACCCGGCTTTT
ATGTACGTTTTCATGCGAAACTTAGCTTGCGAATACTTTTAAAATGCACG
TTACAACAACTTTGCAATCATCCCCTTTTTTCCCCGTGACGTTTCCTCTT
GCAGGTGACGAGAAGCACAAAGAGTTGGTGGATCAAATGTTGAAAGGGGC
AAGATACTTCATCATCAAAAGCAATAATTATGAAAACGTTTCACTTTCAA
AAGCAAAGGTACATAAGATTTTTACAAATCGAATGTATTAAACATCTTAG
TTAATCATTTCTTTGGCGTCAACACAAAGAGAATTTCCACAACCTCCTGA
TGTCGGGAAAAAAACGAACAAAATACTGGCTTTTTCATCAAGTATTTGAT
TTTCATACATTTTGGTTCTAGAAACTTCAAAGTCGATTACTTAGAACTAG
GCCAGAGTTTTCTGCTAAATTTCATTTTCATTCTCTGCTTTTTCTGAGTA
AAGGCAATACCGAACGGATGTCTTTTAATCAATATTTTTCTTCCCTCCTT
CAATTTCAGGGCGTATGGGCGACACCGCCTGCCAACGAGCGAAAATTGAA
CGATGCTTTCAAGGTATGTAGACAAAATTTGATTAAAAACCTTTTTTTTA
AACCGATTTGATTAAAAAAACCTTTGACGTAACGTTTTGAAATTTTCCTG
TTTATCTTTAGGTATTTACTTGCCAGTGCTGATAGGTCGTTTTCACGTAT
GTAGTTTTCTTGTTTTATTCTTCCGCCACTTCTTTCTTTCAGCATTCAAC
GAACGTTGTCTTGGTCTTCAGCGTCAAAGAAAGCGGTCGTTTTCAAGGCT
TCGCGCGTCTTGCATCCGAATCACGTCATGATGGCATCCCCGTCCCTTGG
GTCCTTCCACCAGGTTTCGATCGTCGAATTTTAGGTGGAACGTTCAAGGT
TGACTGGTTAAACAGGTACATGGTCTTCTTAACAAATCTCTATTCTAAAA
GTGTAATGAGTGGTAAAAGCATTTTTAGCCATTGACAATACAAGCAATGA
ATTAGCACGTTTTTACACAATATCTTTCTTCTTTTCAGGAAAGAAGTGAC
TTTTTCCAAATGCGCAAACCTCAGGAACCCTTGGAACGAAAATAAGGAAG
TGAAAATTTGTCGTGACGGACAGGTATGTTTTACAGTAAACTAATGGTGG
TCTATAACAATCTGATGCAGTAAATCGTAACATTTCTCCAGATAAGATTA
TGTACGAACACGAAAACTCTCGTTATAAAGTTTCTCGTTTTCATGACTGA
AAGACGGCTTAAATATTAAAACAAGTAAGGGAGCCATAATTTCTTATTCA
AAGAGCCTTTTCTGATGCAAGACGAATGTTATGACCCTTTGCAACTTGCA
TAATTGTACTCTCCTCCTCTTTTCATTTGCCATAGGAGCTTGAACCGAGT
GTTGGTGAAGTGTTGTGCCGAATGTTTGAAGATGATCTGACCATTAATCT
CGAACGAATACAACGTCATGCAAAACGATATAAAAGTGGTGGCGGTGATC
ATAAACCTGACAGGTTCCTCTCCCTCTCTTTATCTTTCCGTGTTATTTAA
CTGGCTTCCCTACTTCGTAGAAAGATAGCATCAAGTCCTAGTCACTAAGT
CACTAAGATAAAAGTTTAGTTTAAGAAGGTGATCTTTTCTATGGAGGCTT
TCTACCTTTCATTTTGCTTTCTTTTATTTGTGCTTGGGGTAGTGAAGCTG
TACTGTAAGAAGTTGCACCTTACCCCGGGAGAGAAATTTTTAGTTTTCCC
CATTTATACTGAAAATCAGTAAAAATATTAACACACTTTCAAACTTTGCC
AAAGCCTTTAGGCCGTGGGTGCTATTTATCGACTCATCCTCTGTCACGGG
TATGAAGTAAGCTCAGTTTCGGAAAGGATCAGTTTATTTCAGAAAGTTGT
AGTTTAGTTCGGAATTTCTTTTTTTTTTTGTTCTATTAAATTTGTTTGGG
TGATGGTTTTGCGTTAAGATGTTGGTTGAATATGATCCGTTGACACATTT
TCTTGTATATTACACAGGTTACCTTCTTGTGCGTTCATCACAAACCTCAT
CTACTACTTCAACAAAAATGAACTTTTAATGAGAAATTTTATCACATAGT
CCTCTATGAGAACTTTATTTACAAAGTACCACATAAAAAGTGTGCGTGTT
AAAATCGTTCGCTCGGTTACAAATAGGACTAATTGTCTTTGAGATAATAT
GTTACGATGCATGTTGTTAGAGTGCTCTTTATACCTCAAATGAACTTTCC
CATACGATAAAAAGTGAAATATCACTCATATGTTGGCGTTCAGTCAACAA
GACTGTCAAATTTACCGGTTGATACAACCTTTACCGCACAGAGTTTCCGG
TGCTTTATCAAACCTGTTACGTGTATGAACTTTTATTGCAGAAGTTTGTT
TTGAAATGGCCCACCTAAAGTGCCATTCGGGGTATTAATAATGAACTTTT
TACTAGCTTTAACTTGTATAATGTGATGGTGTATCACTGCAATCGTATTA
TGCTGTAGTGACGTTGTACCCTATTTTCGACAGTTCAAAGCTTGTTGGAG
TTGGTGGAGGCTCACGTCAGTGTTCAGCGATATTAGAGTTTGAACAACTG
TAACAGAGTACGACCATCCATTTGCATTGCATAAGTTTTATGGAAGATAA
TTCAAGCGGCGTGGAAGAATGGTGTTTTGGTTGTTTTATCCAGAGAAATT
TTCATTCAAGTTCGAGTTCAACCATTTTCGGGTTTTCCTTAAAAGTGTTC
TTAAGAAAAAAAGAACTTTTGAACTGGTGATTGGATTATTCTTAAGCAAT
ACTTTGCAAGCTAATACAGACTTTTTATATGGCAATCAACATAGATTACT
TGGTATTGCTAGTACACAGGTAGTATCATTTGCTACGCGGTTCCGACTAT
TCGTCTTTTTCAATTCTTTTAGTTTTCCCAAGAGACCATCAACGCTTTGC
TATTTGTTGCAGGCCTCAATAAAATTATGGGAAAATAACCTTTTGGTGTC
TTCGTAACAGTTTTAAAACAATTGAGGTCTGCTCTTGGGAATTCTAATTC
GTCTTTGAGAAACTGATCTTAAGCAAGCAAATTTAACTTAAAGGAAGGAA
TTTGGCGGAAAGAAATTTTGTGGATTTCACGAAGTAGCTATATCCGCCAA
AATAAATCGCCGTCAAATTTTATTTATTTCATGCGTTCTCGATAGCGAAA
GATATCCGCAAAATTCATTCTTCCAAGCTATCTGACAAATTTAAGTTTCT
CAAAAAATTCTCGATCATCCGTCTGAGTGAATTCCCGCCAATAGTTTTTC
CTTTAAGGTAATGTCTTCTATAAGGCCTGCTTTCGATGAGTTCAGAAATA
AGTGTTGACATCTTTCAGAGAACGTCCGACTATCATGCTCAAGTATCGTT
TCAGATTCCGTGGTGGTGGCGACTGGAGAGGTGGACGTGGTGGTTTTAAT
AGGGGTGGACGAGGTGGAAGGGGTGGAGGGCGTTTCCAAAGAAACAGAAG
AGGCGGAGGCGTAGGTGTAGGCGGTGGAGATTTTCGTCGTAGAAGAGGCG
ATGGTGGTCATCATCACAATGGAGGTAAGTGAAAAACATATTTTCAACTC
TTCTCGAATTCTCCTCGAATTTTAAATTTTCTTTCAAAGGAATTCATTTC
TATCTGGGTGTGGCTTTCTTTTATTTCATTGTGGGGACTGACCTTGTACG
GGACTCAGAATGAGAGAAAGTGAAAACAGATAAATTGATTATCCAAGAGA
CATCAGAAACATACTTCTTCAAACTAACGTGTTTTTTTTTTAATTTTTCA
AAATGAAATACAAACAGAGGCATCGATTATCGCTATTAAAAAGCCGTCAC
TTAATGACCAATTATCTTCTAATAGATTATTTCTTTTTAGAAACGGTGTT
ACATAGTTTTTAAGAAAAATTACTATTCCCTAGCGTGCAATCTTTTATGT
TCTTTTATAGCATTTAATTTATCTAAACTTTTTTCGTCACCTTGTACAAT
AATGCATATAGTGTATCTTTTTGAATTTTATTTACTTTTTTTAACATCTA
GCACTGAAGATGGTTTTACCGAAAAACTTGTTGTTTTCTTATTACTTGAA
ATACAAACAGTTTCCTTTGATTATTATTTTGAATTGAAGATTTCATTTTC
CATAAGAAATACACCTGATATAGTCTGATCTAAATCTTTTGTACATCCGG
TACCATAGGTCGTTTCGGAGGTGGTCGCGGTGGCATGGATCGCCATCGAG
GGCATCGGGACAACAATCGGCACGATCACAGACGACAACAAGGCAATAAT
TTCATGCGGCAACAACGTTCACGATCGCCCGATCACAGGAGATACGAGCG
TGAAAATCGTGACCGAAGACACAAAGACCGCGTTCGAGAATTTTTAAAGG
AAGACAGGTCAGACAAGCTGTTATTTGTTTTGAATAAATCTCTCCAAACA
GCTACTTTATTAAAAGATATTCCATGAATAAGTCCTGTTTGAATTTCTTT
TTTTCTTTACGTACAGGTCGAAATACGGGGTACGCGAAGAGACACTTTTA
CACGGTTCATATTCTGATTACGTTCGCGAGTTTCGTCAAAAGCAAATGGG
AAGCTCTTCCTCTTCGCACAGGGTGAGTCTATGTATATCTTTACGCTCAT
TGATCTTCTACTTATTCTAACCCGTTTGATTTTGTTTGTAAAAGAACTTT
TTAAACCTAATCGTGTTTTAGCTCAACGAAAAGTGCCTCGATGTCACAGG
TTTCTTTAGTTCGTCGCACATTTTCAAAGGAAAAGCGTTCTTTCAAAGTG
AACAATATATTCAGTGGGTTTGAATGATCTTTTTCATTTTTTGAATGACT
GTATTGTTTTTTTTTCTCGCAGAATTCTTCTTCGTATTATGGTTCATCAT
CAAGTTACGGTGGATCACACAGTAGATCGGTGAGTATATTATTTTACTAA
AACTTCTTTTGCAATAAGAGTTTTATAAAAGAATTTTTATGCTGGAGTTG
TTTAAGTTTTCAAAACCAATGTAGCAGCGCGCACATTTTGATGCTTTGCA
CTTGAAAGAAGAAAAGACATATTACTTCGTTGGAAAGATAACTTTCAGTG
CGTGATTCAAGGCTTTGATATATTTTTAAGTTGGTAAATATCTTGTTGAA
TGGTAAGGCTTGCAGTATATTTACCAGCAAATTGTGGCACATAAATTCTT
TAGAAAACCTTTTTCTCCTTTTCAGTACGATGCGAACGCAGCCTCAGCGG
AGGAGTTTTTACGCCGCTCATCACATCGATGATGACGAGACCTCCAAAAG
ATTGGAAGAAAAAAAAACGAAAATCCAAAACCTTTTAGCTGTAAGATTGG
AGTTGTTCTTCAAAAATGTTTGCGAAGAGTTTGTTTTCTAAAAGGTTGTT
CATTTCATGGCTTTCCTTGGAAGTGTCAATCCCTTCTTCAACACCAAATA
CTTGTTTGTCAGAAAAAGTGAGAGAAGAATGAACACGTTGTTACCGCTCA
ATGTCTAAATGTTGGCTATTTTTTAATGAAAGAAATGTTGTTACTTTACT
TTTTTTATGTTTTTAAACTTTTTTTGTACCGGATTTAATGCTTTAGAAGC
ACTCGTTGAAAAATTATCTTTGTCATTGTGACGACTGTTGTAAACGTGAT
TGAAATTGATTCAAAACCGACATGGACAGTATTAAAAAAACGTCGGCAGA
ACGATAGTGTACAGATAGTTTTTATTATTGTACGGGGGACTCTCGCTAAT
TTGAATTACCATTGTTAGTCTCTTTGTAATTCGAATTCTTCTCAGTCCCA
CAAAGTGGAGGCCTTGATAAGTTAACAAAATTTATTTCCTTATTCAAATC
TCAACGGTAATCGGAACAAATCAGATTTCAAGTTCGAATTAACGAGAGCC
AACAGTATCTTAGGGTATATTATTTTTCTTTTCATTTTAGAGTTTACATT
TTATTAGTAGACTTCACACCCTTAAAAGATTTTTGGACAAAGTGTAAGAA
TTATGAACAAGTAAAGAGAGCGACTTTTTAGAAAAAAATTCTGACTATTC
CATAGAGCATTTTGACAAACAATTCTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013787XLOC_013787Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024540-exon-sc0000502-1575043694:98502..99035TCONS_00024540-exon-sc0000502-1575043694:98502..99035Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:98201..98314TCONS_00024540-exon-sc0000502-1575043694:98201..98314Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:97444..98057TCONS_00024540-exon-sc0000502-1575043694:97444..98057Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:97240..97282TCONS_00024540-exon-sc0000502-1575043694:97240..97282Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:96567..96779TCONS_00024540-exon-sc0000502-1575043694:96567..96779Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:96192..96257TCONS_00024540-exon-sc0000502-1575043694:96192..96257Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:95828..95931TCONS_00024540-exon-sc0000502-1575043694:95828..95931Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:95473..95526TCONS_00024540-exon-sc0000502-1575043694:95473..95526Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:95121..95293TCONS_00024540-exon-sc0000502-1575043694:95121..95293Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:94913..94997TCONS_00024540-exon-sc0000502-1575043694:94913..94997Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:94523..94650TCONS_00024540-exon-sc0000502-1575043694:94523..94650Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:93167..94018TCONS_00024540-exon-sc0000502-1575043694:93167..94018Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:92462..92631TCONS_00024540-exon-sc0000502-1575043694:92462..92631Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:91629..91827TCONS_00024540-exon-sc0000502-1575043694:91629..91827Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:91414..91519TCONS_00024540-exon-sc0000502-1575043694:91414..91519Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:91107..91163TCONS_00024540-exon-sc0000502-1575043694:91107..91163Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1575043694:89956..90810TCONS_00024540-exon-sc0000502-1575043694:89956..90810Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:98502..99035TCONS_00024540-exon-sc0000502-1510915933:98502..99035Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:98201..98314TCONS_00024540-exon-sc0000502-1510915933:98201..98314Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:97444..98057TCONS_00024540-exon-sc0000502-1510915933:97444..98057Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:97240..97282TCONS_00024540-exon-sc0000502-1510915933:97240..97282Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:96567..96779TCONS_00024540-exon-sc0000502-1510915933:96567..96779Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:96192..96257TCONS_00024540-exon-sc0000502-1510915933:96192..96257Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:95828..95931TCONS_00024540-exon-sc0000502-1510915933:95828..95931Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:95473..95526TCONS_00024540-exon-sc0000502-1510915933:95473..95526Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:95121..95293TCONS_00024540-exon-sc0000502-1510915933:95121..95293Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:94913..94997TCONS_00024540-exon-sc0000502-1510915933:94913..94997Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:94523..94650TCONS_00024540-exon-sc0000502-1510915933:94523..94650Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:93167..94018TCONS_00024540-exon-sc0000502-1510915933:93167..94018Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:92462..92631TCONS_00024540-exon-sc0000502-1510915933:92462..92631Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:91629..91827TCONS_00024540-exon-sc0000502-1510915933:91629..91827Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:91414..91519TCONS_00024540-exon-sc0000502-1510915933:91414..91519Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:91107..91163TCONS_00024540-exon-sc0000502-1510915933:91107..91163Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1510915933:89956..90810TCONS_00024540-exon-sc0000502-1510915933:89956..90810Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:98502..99035TCONS_00024540-exon-sc0000502-1491911889:98502..99035Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:98201..98314TCONS_00024540-exon-sc0000502-1491911889:98201..98314Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:97444..98057TCONS_00024540-exon-sc0000502-1491911889:97444..98057Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:97240..97282TCONS_00024540-exon-sc0000502-1491911889:97240..97282Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:96567..96779TCONS_00024540-exon-sc0000502-1491911889:96567..96779Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:96192..96257TCONS_00024540-exon-sc0000502-1491911889:96192..96257Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:95828..95931TCONS_00024540-exon-sc0000502-1491911889:95828..95931Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:95473..95526TCONS_00024540-exon-sc0000502-1491911889:95473..95526Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:95121..95293TCONS_00024540-exon-sc0000502-1491911889:95121..95293Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:94913..94997TCONS_00024540-exon-sc0000502-1491911889:94913..94997Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:94523..94650TCONS_00024540-exon-sc0000502-1491911889:94523..94650Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:93167..94018TCONS_00024540-exon-sc0000502-1491911889:93167..94018Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:92462..92631TCONS_00024540-exon-sc0000502-1491911889:92462..92631Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:91629..91827TCONS_00024540-exon-sc0000502-1491911889:91629..91827Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:91414..91519TCONS_00024540-exon-sc0000502-1491911889:91414..91519Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:91107..91163TCONS_00024540-exon-sc0000502-1491911889:91107..91163Clytia hemisphaericaexon
TCONS_00024540-exon-sc0000502-1491911889:89956..90810TCONS_00024540-exon-sc0000502-1491911889:89956..90810Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000502supercontigsc0000502:89956..99035 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43988e-06	2.48517e-05	7.99402e-10	1.25675e-05	0	0	0	0	0	0	0	0	0	0	4.01637e-10	0	0	0	1.36075e-06	0	9.63002e-08	5.57174e-06	3.78202e-06	1.80088e-07	0	0	4.44895e-09	0.00617657	0.000350816	1.21551e-05
Blast
[Close]
BLAST of TCONS_00024540 vs. Swiss-Prot (Human)
Match: YTDC1 (YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3)

HSP 1 Score: 204.912 bits (520), Expect = 2.330e-54
Identity = 94/165 (56.97%), Postives = 127/165 (76.97%), Query Frame = 3 
Query: 1617 MLKGARYFIIKSNNYENVSLSKAKGVWATPPANERKLNDAFKHSTNVVLVFSVKESGRFQGFARLASESRHDGIPVPWVLPPGFDRRILGGTFKVDWLNRKEVTFSKCANLRNPWNENKEVKICRDGQELEPSVGEVLCRMFEDDLTINLERI---QRHAKRYKS 2102
            +L+ AR+F+IKSNN+ENVSL+KAKGVW+T P NE+KLN AF+ + +V+L+FSV+ESG+FQGFARL+SES H G P+ WVLP G   ++LGG FK+DW+ R+E+ F+K A+L NPWNE+K VKI RDGQE+E   G  LC +F  D +I+L ++    RH +R  S
Sbjct:  351 VLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNEHKPVKIGRDGQEIELECGTQLCLLFPPDESIDLYQVIHKMRHKRRMHS 515
The following BLAST results are available for this feature:
BLAST of TCONS_00024540 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
YTDC12.330e-5456.97YTH domain-containing protein 1 OS=Homo sapiens GN... [more]
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