TCONS_00024553 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024553
Unique NameTCONS_00024553
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024553 ID=TCONS_00024553|Name=TCONS_00024553|organism=Clytia hemisphaerica|type=transcript|length=2834bp
TGACTTTTAGATGATTTTTTAATAGAATTTATTATGCCAGAAATTTTTAA
TGGGTTCTGATCTTAGTGTCCAACGTGCTTCGAATGATGAAGGGTTGACG
CAACCAAGCGTCATGGACAAGCAACAAATCAGAAGTGTTGACGTTGAAGA
GATTTTTGTTGAAGAGGAAGACGAGGAATACGAGTTTGTTGAAATCCTCT
CTGAACCATCAATGAAATCAACACAAAATGTTGAACAGGGAAGATCAACT
CAACCCTCCAAACATCCATTTTCAACGGAGAGATTTCTCACTTCGCCAAC
CATCATTGTTGAGAATGTGGATGAGGAAGTTAAAGATGAAATGGTTGCCG
AAGATGAAGAGAACGGTAGCAGTGGTGATGAATTCGTCCTCATTGAAATC
GTTGAACAATATCAACAACGACAATCAATGGATGTTCAATTAGACAACCT
GTCAAGTGGCACCCAACTTGTTGAGGAAATTGATAAAGaagtTGAAGGCG
AAGAAAGTGCGGAGACGGACGAGGATAAACAATTGAACGAACTTGCTAAC
GAACGAGATGAAGAACTTGACAACCTCTTCCAACAACCATCAAGATCAAA
CCTTCAATCACCAGATGCAAACGCAAATATCTTTTTCACCAAACCTACCG
ATCGTCCCCCTACCATGTCCCCACAGATGATGGCCCGATCAATCAGCCCT
TCATTGTTGTCTCCATTACCCAGTCCTGGACCAAAAGAAGAGACGGCGAA
AGTGTTTGTATTATCGAGCTACCAAGCAGAAGTCATCCCGCCACGAGCCA
AGACACCAGTGATAGAAGACTTCCAGACATCACAAAACGAGGTTGGCAAA
CTGATGTTGGCTCCAGAATCTTCTTATGAAACAGAGGAGTTGTCTCCATC
CAAGCGACACTTAGACTACCCCATCGAGACACCCTCAAGAACCATCATGT
CAGTCTCGACTATCGACATTAAGCCTGTTTATCAGACGACGCCTACCATT
CAACTACCTACGAAGGACATGATTGTTATCAATGTTGATTTACCAAAACA
TAAAAGACGTTGGTCAACAGATCTCATTGTCAATGTAGTTCAAGAAGAGG
GGGATTATCATCGGGTGGAGGATCGACACGTGGTCTTGGTCTTTCCTGAC
ACCACTTACGAAGAAGTGATCACCATCATGTTCGTGGAGCGAGCCACACC
CTCCATCAACGTCCTTTTCACACCTGTCAATGTGGATATGGTGGATGTTA
AAAGTGATGATGAAGGATCGATGTCACCTTTCGAAGAAATCGTCAGCGAA
GAAATTACTACCTTAGCGATGAGCATGCCAGACTTCTTGGATGATCTCCC
AGAGACGTTAGTAGACGATCAGCTACAACCAGAAAATccactttcaaatt
ctcttcaGGTGAATCCGCCAGAAGATCAGCTGCAACCAGCCAAAGAAGAT
TCAAATGATACCAAAGCACCAGATGCATTGATTCTTCCGAAACCACGAAA
ATTCATACCAACGACAAATTGGCCGAATGTTGACGAAGAGAAGCTGAAAA
GTCCAACGTCACCTTCACCTCTCTCTCCTGGTGATCGTATTCTTGAACAA
CCGAAATTCTCATTCATCAGACGAATCATCTATGGTGAAAGTCCAACTCT
TCTAAACGACGAGGTTACTGAACAATCAGAAGATCCTCCCATGCTGGTGG
GGAGTGAGAATTCATCGAAACCTCAACCAGAGGTGAACACAATTAGACTG
GGAGAAGATACTCAAGCAATACTGGAAAATGAGTCCAATGAACCTTTCGA
GATATTAACCAAGGAGCCCACGGTACTTTCTCAATATGCATCGCAGCCAA
AAGAAGAAGAACTAGATAGGGAACCTGTTTCAGAATCGCCTGTTATTGTT
GAAACAAACATTCGATCTGATATACAACAATCAAAAGTTCCTGAGCTGCC
TTTTCACGGAACTTCCACTTTTGACAAACCAGAGAGAAAGGAAAAATCAG
CGTCAATGGATCAAAGACCTTTTGAGCGAAATACCCCCATCGAGATGATG
GAACATCAAACAGTTATTGTAGACTCACTTCAAATCACTCCAAAAACGCC
ACAAGTAGTAGAGGAGGGTCGAGTTCTCCAAGACTACAACGAGGAAAAAT
CTTTGCCAATTAGTGagccaaaagaattgatttcTGAAGATCTTGCCGAA
GAAGCAAAGGTCCCAGATCCAGAATCAAACGTCAAATTTGGTACATTATT
GCCAGATGAGCAAGCAGATGATCGAACTACACCGAAGCCTTCCTATTACC
AATTACTTAGTGATTCACCAGATGAACCAAGGCGAAGAAGTCGCGTGTGG
AGCAATTCCACCACAGACTCGGAATGTGATATCGTTTTGATCGAAATTGA
ACACATGTCTACTGATGATGAATTGGATGCGCCGCGTGACGATGATCATC
TTGTTACCACGGAACCAATCGACGAAGATAATATCATCCCTGATCAAATG
AAATCAGTTGAAAGTGAGCTTGACTTCTCATCATTGTATCAGGGAGATGA
AACACCTAAATCGCCTGTCCTTCTTGGTCTACCAGTAGATTTGGATCTGT
TACCCGAAACAAGCGTTGATGACAGTGATAAATCATCGCAAGATGAAGAA
CCAGAAGATAAGTATCTTCCAAAAAGGGATCGAGTCTTTGAAGAATTTGA
AGCTACAACAGAAACTCCGTTACAAAGTCAACCAAGCTATGACCTAGATG
ATCACTCACAGGAAGATCTACCAACAGTCAAATCTTTCACCAGGATACAA
ACAATTACAACAGAAGATACTGAACCAGTCGAAN
Run BLAST on NCBI

transcript from alignment at sc0000502:155546..159290-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024553 ID=TCONS_00024553|Name=TCONS_00024553|organism=Clytia hemisphaerica|type=transcript|length=3745bp|location=Sequence derived from alignment at sc0000502:155546..159290- (Clytia hemisphaerica)
TGACTTTTAGATGATTTTTTAATAGAATTTATTATGCCAGAAATTTTTAA
TGGGTTCTGATCTTAGTGTCCAACGTGCTTCGAATGATGAAGGTTTGGTT
TTGATTGTTTCATGAATAATGTTACATTTCGCATATAAATACACCCCTGT
CTCATTTAACCCGTTGAGGGATAGGAGCAGCTGCTGGAATGAAAATTTAC
CTGAAAAATAAAGTGTTGTTTCTTAACACTGCTGAGGTTTTCTCTCACTA
ACAACCTTCCAAAAGTGTATTTAATGATTGATTTTATTGCTAATAAGAAT
TACTTCTACCCTAGGGTTGACGCAACCAAGCGTCATGGACAAGCAACAAA
TCAGAAGTGTTGACGTTGAAGAGATTTTTGTTGAAGAGGAAGACGAGGAA
TACGAGTTTGTTGAAATCCTCTCTGAACCATCAATGAAATCAACACAAAA
TGTTGAACAGGGAAGATCAACTCAACCCTCCAAACATCCATTTTCAACGG
AGAGATTTCTCACTTCGCCAACCATCATTGTTGAGAATGTGGATGAGGAA
GTTAAAGATGAAATGGTTGCCGAAGATGAAGAGAACGGTAGCAGTGGTGA
TGAATTCGTCCTCATTGAAATCGTTGAACAATATCAACAACGACAATCAA
TGGATGTTCAATTAGACAACCTGTCAAGTGGCACCCAACTTGTTGAGGAA
ATTGATAAAGGTACAGTAAAGTCGAACAACCATCAAACTTTCATTTAAAG
TATCAAATGGACATAACCATAGCAATTTCCGTTAAAAAGTATAGCCGGTC
TGTGACTTCAAACTTCTATACATTAGCTAAACTTTTGATCAATGAATTTT
ATATAGTCGGCTTTCATCCTTATAATTTTCTTTTTTTTCTTCAGAAGTTG
AAGGCGAAGAAAGTGCGGAGACGGACGAGGTAAAAGATATTTTCTTTTCT
GTGGATCATTAGCTGATATAACAAATGTATGGCATGTGATGGGATACCTC
TAGATAAGCATGATTCACTTATTCATTTAAAAAGGCTTCCTAAAGAAGAT
AGATGAAAATATTAAGGCAATAGAAATGAATCGAAACATTCTGTCAAGGA
TTATCCGATGATCCATTGCTATCAATCTTAAACTCAATCAATAACAATCT
CTTCCTCGCTAGATGTATTTTCTTCTAAAAATAAATCAATCTAATAACGA
CTTATTTCCTCTTCAGGATAAACAATTGAACGAACTTGCTAACGAACGAG
ATGAAGAACTTGACAACCTCTTCCAACAACCATCAAGATCAAACCTTCAA
TCACCAGATGCAAACGCAAATATCTTTTTCACCAAACCTACCGATCGTCC
CCCTACCATGTCCCCACAGGTGTGTTTCCATACAGCCAACTCATTCAGAG
AGACAAGATTCACCTTATATATATATCAAAACAGTACCAAATTGTACCTA
GCACACTTTTTCTGAGTCTCTTTCTCGAAGAGAAAATTCCCCTTTAAATT
TTTCTCTAATGATTTAACGTGTCATACAGAACCACGAAAATATTGTCCCC
TCAAAACCTTTAATCATACCCTCGCTATTCTTTACAGATGATGGCCCGAT
CAATCAGCCCTTCATTGTTGTCTCCATTACCCAGTCCTGGACCAAAAGAA
GAGACGGCGAAAGTGTTTGTATTATCGAGCTACCAAGCAGAAGTCATCCC
GCCACGAGCCAAGACACCAGTGATAGAAGACTTCCAGACATCACAAAACG
AGGTTGGCAAACTGATGTTGGCTCCAGAATCTTCTTATGAAACAGAGGAG
TTGTCTCCATCCAAGCGACACTTAGACTACCCCATCGAGACACCCTCAAG
AACCATCATGTCAGTCTCGACTATCGACATTAAGCCTGTTTATCAGACGA
CGCCTACCATTCAACTACCTACGAAGGACATGATTGTTATCAATGTTGAT
TTACCAAAACATAAAAGACGTTGGTCAACAGATCTCATTGTCAATGTAGT
TCAAGAAGAGGGGGATTATCATCGGGTGGAGGATCGACACGTGGTCTTGG
TCTTTCCTGACACCACTTACGAAGAAGTGATCACCATCATGTTCGTGGAG
CGAGCCACACCCTCCATCAACGTCCTTTTCACACCTGTCAATGTGGATAT
GGTGGATGTTAAAAGTGATGATGAAGGATCGATGTCACCTTTCGAAGAAA
TCGTCAGCGAAGAAATTACTACCTTAGCGATGAGCATGCCAGACTTCTTG
GATGATCTCCCAGAGACGTTAGTAGACGATCAGCTACAACCAGAAAATCC
ACTTTCAAATTCTCTTCAGGTGAATCCGCCAGAAGATCAGCTGCAACCAG
CCAAAGAAGATTCAAATGATACCAAAGCACCAGATGCATTGATTCTTCCG
AAACCACGAAAATTCATACCAACGACAAATTGGCCGAATGTTGACGAAGA
GAAGCTGAAAAGTCCAACGTCACCTTCACCTCTCTCTCCTGGTGATCGTA
TTCTTGAACAACCGAAATTCTCATTCATCAGACGAATCATCTATGGTGAA
AGTCCAACTCTTCTAAACGACGAGGTTACTGAACAATCAGAAGATCCTCC
CATGCTGGTGGGGAGTGAGAATTCATCGAAACCTCAACCAGAGGTGAACA
CAATTAGACTGGGAGAAGATACTCAAGCAATACTGGAAAATGAGTCCAAT
GAACCTTTCGAGATATTAACCAAGGAGCCCACGGTACTTTCTCAATATGC
ATCGCAGCCAAAAGAAGAAGAACTAGATAGGGAACCTGTTTCAGAATCGC
CTGTTATTGTTGAAACAAACATTCGATCTGATATACAACAATCAAAAGTT
CCTGAGCTGCCTTTTCACGGAACTTCCACTTTTGACAAACCAGAGAGAAA
GGAAAAATCAGCGTCAATGGATCAAAGACCTTTTGAGCGAAATACCCCCA
TCGAGATGATGGAACATCAAACAGTTATTGTAGACTCACTTCAAATCACT
CCAAAAACGCCACAAGTAGTAGAGGAGGGTCGAGTTCTCCAAGACTACAA
CGAGGAAAAATCTTTGCCAATTAGTGAGCCAAAAGAATTGATTTCTGAAG
ATCTTGCCGAAGAAGCAAAGGTCCCAGATCCAGAATCAAACGTCAAATTT
GGTACATTATTGCCAGATGAGCAAGCAGATGATCGAACTACACCGAAGCC
TTCCTATTACCAATTACTTAGTGATTCACCAGATGAACCAAGGCGAAGAA
GTCGCGTGTGGAGCAATTCCACCACAGACTCGGAATGTGATATCGTTTTG
ATCGAAATTGAACACATGTCTACTGATGATGAATTGGATGCGCCGCGTGA
CGATGATCATCTTGTTACCACGGAACCAATCGACGAAGATAATATCATCC
CTGATCAAATGAAATCAGTTGAAAGTGAGCTTGACTTCTCATCATTGTAT
CAGGGAGATGAAACACCTAAATCGCCTGTCCTTCTTGGTCTACCAGTAGA
TTTGGATCTGTTACCCGAAACAAGCGTTGATGACAGTGATAAATCATCGC
AAGATGAAGAACCAGAAGATAAGTATCTTCCAAAAAGGGATCGAGTCTTT
GAAGAATTTGAAGCTACAACAGAAACTCCGTTACAAAGTCAACCAAGCTA
TGACCTAGATGATCACTCACAGGAAGATCTACCAACAGTCAAATCTTTCA
CCAGGATACAAACAATTACAACAGAAGATACTGAACCAGTCGAAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013791XLOC_013791Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024553-exon-sc0000502-1575043694:159199..159290TCONS_00024553-exon-sc0000502-1575043694:159199..159290Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1575043694:158581..158976TCONS_00024553-exon-sc0000502-1575043694:158581..158976Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1575043694:158362..158396TCONS_00024553-exon-sc0000502-1575043694:158362..158396Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1575043694:157922..158074TCONS_00024553-exon-sc0000502-1575043694:157922..158074Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1575043694:155546..157703TCONS_00024553-exon-sc0000502-1575043694:155546..157703Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1510915933:159199..159290TCONS_00024553-exon-sc0000502-1510915933:159199..159290Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1510915933:158581..158976TCONS_00024553-exon-sc0000502-1510915933:158581..158976Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1510915933:158362..158396TCONS_00024553-exon-sc0000502-1510915933:158362..158396Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1510915933:157922..158074TCONS_00024553-exon-sc0000502-1510915933:157922..158074Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1510915933:155546..157703TCONS_00024553-exon-sc0000502-1510915933:155546..157703Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1491911889:159199..159290TCONS_00024553-exon-sc0000502-1491911889:159199..159290Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1491911889:158581..158976TCONS_00024553-exon-sc0000502-1491911889:158581..158976Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1491911889:158362..158396TCONS_00024553-exon-sc0000502-1491911889:158362..158396Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1491911889:157922..158074TCONS_00024553-exon-sc0000502-1491911889:157922..158074Clytia hemisphaericaexon
TCONS_00024553-exon-sc0000502-1491911889:155546..157703TCONS_00024553-exon-sc0000502-1491911889:155546..157703Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000502supercontigsc0000502:155546..159290 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.13435	0.0810309	0.044089	0.0448043	0.629798	0.949714	0.108624	0.0807613	4.07543e-07	0	0.378218	4.5654e-08	0.647621	1.343	0.114661	0	0.402714	0	0.321868	9.57455	0.000148589	0.000730154	0.402811	0	0.927186	0.169545	0.0485844	0.137271	0.0442073	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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