TCONS_00024559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024559
Unique NameTCONS_00024559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2180

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024559 ID=TCONS_00024559|Name=TCONS_00024559|organism=Clytia hemisphaerica|type=transcript|length=2180bp
AACCAGCATCCTGGAATGGCTTTGACAATTGACGTACCTAGATGTTTCTG
TCAAAAAAGTCaagttttggtcaaaatatataTTATCCATAGATATCAGT
CCGTGTACCATACTGTAGAGTAAAACATAACATGTGTGTTCTGAGAGGTG
TGATTACAAAAGTCATCAATAACTTATAATAATTGCAAGCACACACACAA
GTTGTAACTCTCTATAGGgttcaaaactttatttcacTCCGGATATCCAG
TGTTCAAGAAAAGTTggtaaaagaaaagtttttgaacAGTTGGTAAAAGT
TAcaagataaaaaacaattctTTACCATCCTCTTTCTCTATTCATTCTCT
CCTTTGTTTACAATATTCTGTGGGATTTAGAGCTCCGCATCTCAGTTTTG
CGCTCCTTCTTCAACTTGGCTTGACCTGGCAACCAGACTGCCAGACCACG
TGACCTCAATATTCACAGACGTTATTTCCAAACTAAACTCACGGCTTTTT
TCCCGATTATTACTATTATTGTTATTCGATTTATTTCCCGATTTTGTCTG
TCCTACAGTCCTTTATGATGAGGCTTAGAGGCTATTTTGAATATTATGTC
GAATTATTTTTTGGCGTAAAAAAGCTTCTTATGGCTAGCATGTACTGATT
TATGGCacccaaaaatgacaaaaaaaagaacCTATCCTCAAGAAGATCAT
GCTCTTTCTAAAAAAGACCTTAATAATCGGGGACACCTTATTTGGTTGGC
CGTAACCTGACTGTAACAATAAATCGAATCGTCTTGAACAATCAAGTTTT
CTTTTTAGAGGGATCAAGATTTGTCCATGCATATTATGTTTTCCCGGAAT
CAACTGCTGAATCGCGTTATGATATCAGGCGTTTCCAACAAACTCTTCCA
GCCGACTCTCACGTGGATGCCATCGGATTTGAAAGAAATCCCAATGAATT
TCTATGGCAAAAAAGGACTTTCATTTTAGCGGAAAACGAGGACGGTCTAC
GAACGCATCCAGAATGGATGAGAACTCCCTATACAATCGAACAAGATGTT
TTATCGCCTAGTAGAGTCACAATACGAAAAGATGTCCCTAAAGATGATAT
TGATCCGAGCGTTATCTTGGATGATGGCTCTATCACGGAAATCACTCAAT
TTACTGACTTGATGTGTAAAAAGAATATTGTTACAGAAGTTTACGTTGTT
TCCAAAACATTCCCTGAGAAAGGTTACAGCATTACACAAAACTTTCGCAA
AATGCAACACGACAAAACGGGCATTGAAACTTATGTTCGGGGAGAATGCA
TACAATACACAATCACAGATACTAAAGAGGTTCAAAAAACGAAGAAGAGT
GATATGTCAATGGAAGAGACCCTTGCTTCTTTTCATTTACAAAGAAAGTT
GACTTCCAGGATACTATTTTTAAGTAAATCACTACGTAAAAGAGGCGATA
CTTTGTTTATTTCTTCCAGAAATAGCAAAGAAAACCAAAGCGCAGACTTT
CTtgaaatgaAGAGCATCGGTGTGAAGCGACCAGCCAATGATTTACAAAG
ACAGTTTCTCACCGAAAATAAAGACGATAGTAAAAGAAAGGTGACGTCGG
TCTTTGGAATGAACCTTGATGAAGATGACTTTGAAATACATTCCTTCACC
GTTCCCTTCGATAGAAATGATTTCTTGTTCACAGGTAAACAAAGACGTGA
AAAGTATACAACACAAAGTCTAGACCGGGCTTTATTTTCAAAGAGGAGGA
AAGTCACATCAGCCACAGGAGTTGATTTGTATCAATCAGAACAAGATCCC
AGCAAACAAAACACTCTTCCAAAAcacaatttgatttttcatggcGCTGT
CATTTCCTCTTCTGGTGATGATAACGATTCTGACATTTGTGAAGAATTTG
TTAATGAAACTAGGAGAGAATTTCAAATACAAGAAGCTTCAAGGCGAATT
TACACGCCGACTTCTATGTtggaaaacaatgaaaatgacacTACAACTAA
AAGTCTACCGGGGATCGTTCGTATCGACATGGAGGATTCTTTGAGAAGCT
CTTTACAACGTCAATCGTCGGTTCAATTTGTTTCCGAAGAAGATATCGAA
CCAACTGAATCATCACTGGACAATCAATCGCCACAAAATATGGAGTTCCC
ACAAAATATTCGTACAAAGGAAGAAACCAT
Run BLAST on NCBI

transcript from alignment at sc0000502:200923..205573-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024559 ID=TCONS_00024559|Name=TCONS_00024559|organism=Clytia hemisphaerica|type=transcript|length=4651bp|location=Sequence derived from alignment at sc0000502:200923..205573- (Clytia hemisphaerica)
AACCAGCATCCTGGAATGGCTTTGACAATTGACGTACCTAGATGTTTCTG
TCAAAAAAGTCAAGTTTTGGTCAAAATATATATTATCCATAGATATCAGT
CCGTGTACCATACTGTAGAGTAAAACATAACATGTGTGTTCTGAGAGGTG
TGATTACAAAAGTCATCAATAACTTATAATAATTGCAAGCACACACACAA
GTTGTAACTCTCTATAGGGTTCAAAACTTTATTTCACTCCGGATATCCAG
TGTTCAAGAAAAGTTGGTAAAAGAAAAGTTTTTGAACAGTTGGTAAAAGT
TACAAGATAAAAAACAATTCTTTACCATCCTCTTTCTCTATTCATTCTCT
CCTTTGTTTACAATATTCTGTGTTCTCTCCTTTGTTTACAATATTCTGTG
TTCTCTCCTTTGTTTACAATATTCTGTGTTCTCTCCTTTGTTTACAATAT
TCTGTGTTCTCTCCTTTGTTTACAATATTCTGTGTTCTCTCCTTTGTTTA
CAATATTCTGTGTTCTCTCCTTTGTTTACAATATTCTGTGTTCTCTCCTT
TGTTTACAATATTCTGTGTTCTCTCCTTTGTTTACAATATTCTGTGTTCT
CTCCTTTGTTTACAATATTCTGTGTTCTCTCCTTTGTTTACAACATTCTG
TGGGATTTAGAGCTCCGCATCTCAGTTTTGCGCTCCTTCTTCAACTTGGC
TTGACCTGGCAACCAGACTGCCAGACCACGTGACCTCAATATTCACAGAC
GTTATTTCCAAACTAAACTCACGGCTTTTTTCCCGATTATTACTATTATT
GTTATTCGATTTATTTCCCGATTTTGTCTGTCCTACAGTCCTTTATGATG
AGGCTTAGAGGCTATTTTGAATATTATGTCGAATTATTTTTTGGCGTAAA
AAAGCTTCTTATGGCTAGCATGTACTGATTTATGGCACCCAAAAATGACA
AAAAAAAGAACCTATCCTCAAGAAGATCATGCTCTTTCTAAAAAAGACCT
TAATAATCGGGGACACCTTATTTGGTTGGCCGTAACCTGACTGTAACAAT
AAATCGAATCGTCTTGAACAATCAAGTTTTCTTTTTAGAGGGATCAAGAT
TTGTCCATGCATATTATGTTTTCCCGGAATCAACTGCTGAATCGCGTTAT
GATATCAGGCGTTTCCAACAAACTCTTCCAGCCGACTCTCACGTGGATGC
CATCGGATTTGAAAGAAATCCCAATGAATTTCTATGGCAAAAAAGGACTT
TCATTTTAGGTATGTCTTTTACTAAATTTTTTCGAAAGTGGTCAAGAAAT
CTTCCTTGATCATTTGATTTATAATTCGATGAATTAAATCACTCCTGTCT
CGTTGATTCCGTATGAATTCTATTTTTACCAATTGAGAATATAATCATAT
GACCGTTATACAGGGCTCTTCTTGTAGTAATCATTCACGCAAGTGGCCAG
GGTTAACACAATGACCGTTGCAATTCACCTTTAAAGTGATATTCTAACCC
AGATAAATCCAAAACATGTCCAAAAGTGTCGGGAGATATTTTAAAGAGAA
GAATAGGTAAACATCCTTGGATAAGGTCCTGCTTATAATATTTTCTGAAT
GCTTTCAGCGGAAAACGAGGACGGTCTACGAACGCATCCAGAATGGATGA
GAACTCCCTATACAATCGAACAAGATGTTTTATCGCCTAGTAGAGTCACA
ATACGAAAAGATGTCCCTAAAGATGATATTGATCCGAGCGTTATCTTGGA
TGATGGCTCTATCACGGAAATCACTCAATTTACTGACTTGATGTGTAAAA
AGAATATTGTTACAGAAGTTTACGTTGTTTCCAAAACATTCCCTGAGAAA
GGTTACAGCATTACACAAAACTTTCGCAAAATGCAACACGACAAAACGGG
CATTGAAACTTATGTTCGGGGAGAATGCATACAATACACAATCACAGATA
CTAAAGAGGTTCAAAAAACGAAGAAGAGTGATATGTCAATGGAAGAGACC
CTTGCTTCTTTTCATTTACAAAGAAAGTTGACTTCCAGGATACTATTTTT
AAGTAAATCACTACGTAAAAGAGGCGATACTTTGTTTATTTCTTCCAGAA
ATAGCAAAGAAAACCAAAGCGCAGACTTTCTGTAAGTATCTTATTACAAA
ACAAAATTCATTATGTAATTATCAACCAAATTATTCAGGATGGTACCTCC
CGAGATTTGGTATCAATTTACAATGAATATTAAATTTTTCGGTTAGCTAC
TATGATTTTACAAAGCATAAGTGGATTTTTCACGACCATCAAAGTTTCAA
CTCTTTTATTTTAGTGAAATGAAGAGCATCGGTGTGAAGCGACCAGCCAA
TGATTTACAAAGACAGTTTCTCACCGAAAATAAAGACGATAGTAAAAGAA
AGGTAAACTTGTTGTATGTTTTCCATTTTAAATAGAAATCCACAGGATAA
CATGAAATTTCGAGGAATGGAAAGCCTGAAAGGGTGTTTAATTTTTGAGT
ACTTACAACGATATTAAAAACAACTTTACACAGAGTCTGCAAGTTCGTCC
GTTTCAGACGGATTTCCGTGGAGAGTTACAAAGAGGCATTTCCGTCTTCA
AAATTTCCACAAAAAAAGTTCTGCAAAATTCAAAGAGTCTTGTCTGATTG
ACTGTTTAAAGTTCACTTCCATCTGAGACAAAAACTTTGACCAGTTTCGA
CCACGTAAAATAATCATGAATTGTTTCACCTTTTCACTTCAGGTGACGTC
GGTCTTTGGAATGAACCTTGATGAAGATGACTTTGAAATACATTCCTTCA
CCGTTCCCTTCGATAGAAATGATTTCTTGTTCACAGGTAAATTAGCCCGA
ACTCCACTTAACGTTTTTGATAGACTGGATACCATGATTAACTTCACTTG
ACTTAGTTATCAAAAAGCAAAGTTAAGCCAGATGATAAATGAATTAAATA
CTCTACAACCATTTATTGCTTGCTATTGTTAGATGTAGAAAGTCCGACGC
GAAAATTATGTCACATAAAGACGATCAATCTGTCCTTGATTAAGGTTCCA
ATTTTGACAACACGGCGGCAACAAGACGGCTTCTAACAAAATAATTTGAA
TACTATACTTGTCTCTTGTTTTCACTTTTAAGTTAAAGTTTTCACACATT
GACAAATCACTTGAAAAAAAATGTCATTCTTCTTTTGGCCAAGACCATTA
GAATGTTCTTATAGAGTATAATATTTTTATATACCGGGTGACCCACGAAA
AAGTTCGGACGTTTCTCGGCGTGTTGAGGCCGAACAAATGTCCCAAAGTG
CTTGGAGTTTTATTATTTAGAAAGTAGATATCCTAACTTAAAATCCGAGC
CATTAATTTTTAAATTTGACGCACANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNAAAACAGGTAAAAAAGGGGTATCAAAT
TAGGTATTTTTAGACGTTTTTGATATACAGTTTTTGAGAAAATTCCTTGA
AAGTGCCAATTTTGATAAAAACTAGTCCTGTTTTAAACAAAAACTACTTT
CAAAGGTGTTTTTAATAATTATTAATGTCATAAAACTCGTTAAATAAGTC
AATTTGTAAGTCATTTTCTAATTGATTGCATTAATTTAATACCTCTTTTT
TACGTGTTTTTTACACTTTCCGAAAAGTGAATTTTGAGTTTAAAAGGTCA
TAAGTAGAGAACTAGTTGGTCAAATTCAAAAAGTGATAGCTCAAATTTTA
AGTTAGGATATCTACTTTTTAAATACCAAAACTCCGAGCACTTTGGGACA
TTTGTTCGAGAAAGGTCCGAACTTTTTCGTGGGTCACCCGGTATAAAAAA
AGTGTGTACATACTATTAATTGTGACCGCCGTGAACATAATTTCTAATTT
CAAGTGTATTTGGTTTTTATTCGACAATAAAAACATATTCACCTTAATAC
GTCAAAGACATGCATCTCTATGTACCGCTTTGTGACCCTTTAGTTTTTTC
TTCAGGTAAACAAAGACGTGAAAAGTATACAACACAAAGTCTAGACCGGG
CTTTATTTTCAAAGAGGAGGAAAGTCACATCAGCCACAGGAGTTGATTTG
TATCAATCAGAACAAGATCCCAGCAAACAAAACACTCTTCCAAAACACAA
TTTGATTTTTCATGGCGCTGTCATTTCCTCTTCTGGTGATGATAACGATT
CTGACATTTGTGAAGAATTTGTTAATGAAACTAGGAGAGAATTTCAAATA
CAAGAAGCTTCAAGGCGAATTTACACGCCGACTTCTATGTTGGAAAACAA
TGAAAATGACACTACAACTAAAAGTCTACCGGGGATCGTTCGTATCGACA
TGGAGGATTCTTTGAGAAGCTCTTTACAACGTCAATCGTCGGTTCAATTT
GTTTCCGAAGAAGATATCGAACCAACTGAATCATCACTGGACAATCAATC
GCCACAAAATATGGAGTTCCCACAAAATATTCGTACAAAGGAAGAAACCA
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013792XLOC_013792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024559-exon-sc0000502-1575043694:205210..205573TCONS_00024559-exon-sc0000502-1575043694:205210..205573Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1575043694:204315..204929TCONS_00024559-exon-sc0000502-1575043694:204315..204929Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1575043694:203443..203965TCONS_00024559-exon-sc0000502-1575043694:203443..203965Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1575043694:203172..203259TCONS_00024559-exon-sc0000502-1575043694:203172..203259Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1575043694:202738..202831TCONS_00024559-exon-sc0000502-1575043694:202738..202831Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1575043694:200923..201418TCONS_00024559-exon-sc0000502-1575043694:200923..201418Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1510915933:205210..205573TCONS_00024559-exon-sc0000502-1510915933:205210..205573Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1510915933:204315..204929TCONS_00024559-exon-sc0000502-1510915933:204315..204929Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1510915933:203443..203965TCONS_00024559-exon-sc0000502-1510915933:203443..203965Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1510915933:203172..203259TCONS_00024559-exon-sc0000502-1510915933:203172..203259Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1510915933:202738..202831TCONS_00024559-exon-sc0000502-1510915933:202738..202831Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1510915933:200923..201418TCONS_00024559-exon-sc0000502-1510915933:200923..201418Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1491911889:205210..205573TCONS_00024559-exon-sc0000502-1491911889:205210..205573Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1491911889:204315..204929TCONS_00024559-exon-sc0000502-1491911889:204315..204929Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1491911889:203443..203965TCONS_00024559-exon-sc0000502-1491911889:203443..203965Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1491911889:203172..203259TCONS_00024559-exon-sc0000502-1491911889:203172..203259Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1491911889:202738..202831TCONS_00024559-exon-sc0000502-1491911889:202738..202831Clytia hemisphaericaexon
TCONS_00024559-exon-sc0000502-1491911889:200923..201418TCONS_00024559-exon-sc0000502-1491911889:200923..201418Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000502supercontigsc0000502:200923..205573 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.129501	0.205674	0.243549	0.479276	0.32476	0.530181	0.865446	0.0455044	0.0470992	0	0.0656576	0	0	0.018353	0	0	0.0497686	0.0200629	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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