TCONS_00024561 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024561
Unique NameTCONS_00024561
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1937

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024561 ID=TCONS_00024561|Name=TCONS_00024561|organism=Clytia hemisphaerica|type=transcript|length=1937bp
TTTCGCTCAGAACACCACACACGTTCATTTCAATCTAGAAACTGATTCAC
CTTCATCCTTAGACACTTTGGTCTATATATCCATCAACATAAATCTCTGC
TAACATCATATAAAATGGTTGAAGAAAAACCAACAGCGTCAACTGCTAAA
GTTCCAAGTGAAAAAGATTTGGAGGAAGTTGCTGAGCTTATGTCTGTTGG
GAAGAGACACTTGATATGCAATGAACCTGAGAAAGCATTGGACTACTTTG
TTGAACTATGTGAAAGGCTTGCTGAATTTTATGGACAGACAGCAGATGAA
TGTGCTGATGCTTACTTACACTACGGAAAAACTTTACTTGGATTGGCTAG
AcaagagattggagtgttttgGAATGCAGTTAAAGAAGCCCCAGTATTAC
AAGAAGAGGAAGAAACAGAGGAAGAGGGAGAAGATCAAGGTGAAGTTATG
GAGACAGAAACAAAAAGTGGAGATAAAGACGATGAAAAGACAGAACAAAA
ACAAGATACCGAAGATGAAGAGGAAGCACTAAAGCCTTCTGAAATAAAAG
AGCAAGTATCACATGCAATGAGAGAGGGCAATCTGTATAATGATGCAACC
ACGGAAGAAGAAACTGAACCAGAAGAGGAAGAATCGAAAGAAAATGGAGA
ATCCACTACAGAATCGAAAGAGACAGCAGAGAAGAAGGAAGGTGAAGAAC
AAGACGATGATGATTGTGGGGATCAAGATGTATCACACATGGAACTTGCA
TGGGAAATGTTGGAGTTAACTTGCAGTATTTGTAGCAGAATGGTTACTGA
AAAAAGGGACATAGAAAAAGCAGAAGAGATGCTAGCAGAAGCAAAGTATG
GGCTTGCACAAATCAGCATGGAACAAGAACAATACGAGAGAGCAATTGAA
GATTTCAATTCCTGCCTAGAACATTACACAAAGACATTAGATGATAAATT
GGATAGACGGATTGCTGAAATCCACTACAATGTCGGCCTTGCATTTTCAT
TTGACAAGAAGTTCGAAGAAGCAGTCACTTCTTTCAAAGAGGCTAAATCA
CTGTTAGAATCAAGACTCGACGTGTTGAAAGGGAAGATTGAAAAACACGA
ACGGGAAAGTGGTAAAGGGAAAGCTCCTACAGAACTCTTGGATTGGAACA
AAGAAATGAAGGAGTTGGAGGACTTGGTCCTTCTTGACATGAATGCAAAg
ATCGAGGATGCAGAAGAATCGAAAAAGCAAGCAGATGCAGAGCTCGTAGC
TATGAAAGAGAAAACTAAAGACCTCTTTGGTGCCTTGTCATCTGCCACAG
GATTCGAAACAGGTTTCGGTTTTGACGAATCAACTCCGACAACGGAAGTC
AAAGTACACGATGCTACCACGAACGTTCGCAAAGGCTCGCGACCATCAGA
CGATGAAGGCGTGAGCGACGCAAAGAAGGCCAAAACAGTCGATCAAAACT
CAAACAATGAAACGGCAACAGCCGGAGAGAAGACAAACGGTGTCGCCCAC
AACGACGAAAAACCAACTTCTGTAGGAGCTTAATTTATtgtctatttttt
ttctttttacgtATTTTGTacccttttcatttcattaccTTTTATAATTA
TCTTTCGTTAcggtttttatcttaaaatctaaaatgtaaaaaaaaacaca
agaatTTGTAAATATTAAAGTTAAATGGAACAAGATGATGGCTTTTGATT
TCCCTATATTTTGAAACGACCTATCTTTGAGGTTCTTCAACTTTGCTTGT
CCGGATGAGTTTTAATTCAGTGTAGTAAATAATTTCGAACAATCTACTGA
TATCGTAATtgccaatagaccttttcaaaaattacgtcgcgaacatcgct
tgcctcgtattcagacaattaccatggtgattatgtttCTTGAgatatta
aatgatttttttatgaataggaagtagttttaataaa
Run BLAST on NCBI

transcript from alignment at sc0000502:211475..223162-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024561 ID=TCONS_00024561|Name=TCONS_00024561|organism=Clytia hemisphaerica|type=transcript|length=11688bp|location=Sequence derived from alignment at sc0000502:211475..223162- (Clytia hemisphaerica)
TTTCGCTCAGAACACCACACACGTTCATTTCAATCTAGAAACTGATTCAC
CTTCATCCTTAGACACTTTGGTCTATATATCCATCAACATAAATCTCTGC
TAACATCATATAAAATGGTTGAAGAAAAACCAACAGCGTCAACTGCTAAA
GTTCCAAGGTAAGTTCATCCAATCCAAGTAAGTAGATTCGATCTTTGTTT
TTACCTCTACATTCTCCCACTGTCCCACCCCACACCTTTCTTCACTTCCT
TCCCTTCCAAGAGCAGGTGGGGGTCAATACTTAAAATCTAGGACATCTTG
GTGATATGGTGGTATACCCAAAAAATGTAAAATTCCTTCAAGTACCATTG
GGTACTAAAATACGATGCTAGTCAAAAATAGTGTGACATTTTTATTTCTC
CAAAATAACACCAAATTTAGAATTTTGTCAATAACTGTCTCAAATCTTGA
TATCCTGAAATAAGATTTCAGGAGGTGATAGAGCTAATGAAGACAAAGCC
ATGGATATAGGTATCACGTGCGTTTGGTTTGGGAACGCGAAACACGAACG
CAAACTACCCATGTCTAAACTTTTCAATATATCTCCAGAACTAACAGATT
TTTTGAAATTCTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNTACAATATGTTTTAAGTAAGGCAAAAAAGCTAAGCAAAGATAG
ATTTTTAAACAAAACCCATTAAAATGAGCTGTTTTTGAGGTTGACAAGCC
GCAAAAGCCTGTATTGAGTCAAAAGTGGGGAGAAAAGGCTTTTTGGGCTG
TCAACCTCAAAAAACGCTTCAATAATCATATAAATCCAATTCCATAGTCT
TTCTGTCTTAAAAACAAATATAATTGAGGTTTACAAATGATTTTAAAAGA
GCTTCTGGCTGTTTCCATCATAAGGCACTTTACCTTGCATTGAAATAAAC
GTTGTTGTCAACCTCAAAACTTGCTCAAATAACAGATATTTCCTTGGAAA
AAGATTTTTAGACGGTCAATAATGATATTTTATAAGCCAAAGTCATCATA
TTGATCTACATTTGTCAAAATTATGCACAAAACTAATGTTAACCTCATTT
TTGGAGCCATTTAATAAAATGTCAACCTCAAATAACACCCTTCATATCAA
TTTTCAACCCTTTGAGATAATTTCAGAGCTACTTACTTGGAATACTTGGA
AGTGCTTTCGATGGTCTTCCATCTAGGTGAACAATCCAATGTCCGCCTGC
CGATTATTGATTTGATGTTTGATTGAGTTGGATGCANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTTAGGGAGGGAGTTGAACAAGATTG
GCCCACGGGTTGATAAGAAATTATGTCGGATTGACTGTAGGGCAACTGAT
GTTCCTGTGATTCGGGCTTTAACAAAGCACAATCTTCCAAGTCTGGGTGG
GAAAACAGGTCGTAACCCGTCTGACTGGTTGATATTAGGCACAAGGTTTT
CAAGAATCTTCCACGTGTAGATCATGTATCTTTCACGTCTTCTTTCTAGC
GAATAAAGCTTGAATGCCTTCAATCTTGACCAGTATGATTTTTCGGGGTG
AATGATTTTTCGAATGAAGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAGGTACAATGAGAGATTTCTTTAGAG
TTTCAGGGGTCTTTCCAGTATCGAGGCATTTTCTCCAAAGGATGAGAAGA
GGTCTTGATAGTGATTTTTTGCAGCGTTTTAGAGCTATAACATATCCAAA
ATGTAATTCAAAAGTCAACTTACAGGGTGTCAAAGAACCCTAACAGTGTC
AACCTCAGGTCATGTTAACCTCAACTTTGGCTCCCACTTCAAAAAAACGT
ATCTCGAGTTAGGGTAAACCTCATAAGAAGATACTTATATGCCTAGAAAG
CAAAATTATTCAGCCTAACCATACTAAAGTTTCAGTTGTCAACCTCAAAC
TTAGCAAATTTTATGGGGCTAAATGTAAACCTCAACAAAAATGTCACAAA
TACCCCCTCTATTTTTGACCAGCATCATACCCAAAAAAGATGGTACCCGC
CATATACTCAAATTTGAGAATTCTTAAGTAAATTGGTACTAAAATTATAG
TAATTTCGTTGTCATTGATATTGTGGCACGTTCTAGGCGTGTTTGGGATG
GGAAATAAGGGGCTTCACTTTTTTTTGCCTGGGGAACAACTTTCTTATTG
GGAAAGGTCAGAAATTCTACTCTAGCCCTTTGGACTTTAAAACTCAATGC
CAATGGTATACCAGTTCTGTTCAAGGCAAAATTTGGAATGCAAATCAGGA
TATTACTTTCAAATACTTTAATCGTAGAAATTTTAGCGAGACTAATTTTA
GCGTTTTAGCGAGTTTTCCCTATTTTCGCCAAAATAAATCTCGCCAAAAC
ACGCCGATTCGACAGATCGCTATAATTTATCCACGCGAAAATTTTTGAAA
TCGTGATTCGCTGAAATAAATCCAAAAAATCAAGATTTTCCTGACTCGCT
AATATACGCTATATATAAAATTAGTCTCGCTAAAATTTCTATGATTAAAG
TAAGGATTACACTTTCATCCTGTATGCTTTCAACGTCAGATGTGGTTTTG
TTGGGTCGTATTATTCGGCAACGCGGCCATGTGGAAAAATTTTAACAGAG
GGGCTACTGACTTTATTCTGGATGAACAAATATATATAGTTTTCGAAATG
GCAATCGCATGCCGAGAGATATGTTGCAAGTGAGGATATGGGGATTTAGG
GTCATTGAACTAATTTGAAACTTTTACAGTCAGGGAAATCCCTCAATTGC
GGTAGTAATTTTTTACTGCAATTGCAGTATAAACGTCACTTTTACATTTT
TCATATACCCTAATTGCAGTATATTCAAGAAACAGAATTCAAGATTCAAG
TAGAAAACAGGCAATCTTTGTACATAATTCATCATATCTTTTTAACGAAT
ACAGAAAATACTTTTTCCATAGATCAGATTCTTTAAATAAAGAGAAGCTT
ACTTACTCGAACCAGTCGAACCAAATCGAACACAATCGACCGATTGAAAT
TCGATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTCGATTGGTTCG
ATTGTTGTTCGACTGGTTCGATCGTCGATTCCGTTCGATTGAGATCGTTT
GGCTTTATTCTTGCAGCTTCCCAACATCCAACCTCACAAGCATCACAAGC
TGAATGAAATTACTTTCGATTTCCCGTAGAAATTATGCAATGAACAATCC
GGGGGTCAATGAATCGACAATCGAACGCAATCGAACGCAGTCCAACATCA
ATCAAACGCAATCAAATATCAATCGAATCTGAAAATTGCGGTAATATTTG
ATTGAGATTCGATTGCGTTCGACAATCAAATTTCAATCGGTCGATTGTGT
TCGATTTGGTTCGACTGGTTCGATCGTCGATTCCGTTCGATTGAGATCGT
CTGGATATAGCGGTTATAAGCCTTTGTAGGCTAGCCACCAATGAAAACTG
CCGCAATTGCAGTATACTGCAATTGAGGGATTTCCCTGACTGTTTTTACT
AACCAAACATCGAACTCCTATTGCTGCAAAAATTGTGAATGTTCAAGCAG
GTTCAATTATTTTACTCTGAGAACTTTAATCATTCTACAGAGTTAGGTTA
GTTCCATTGTTCGATTGATTTGACAAGTTCGATTAATCAGGTCTGGTTTT
ATGAATCTTTTTTAGAGTATTTCATGATTTTTTTTGCAAATTTTCAAAAT
TTTTAAGTTTTCTTATTTAAAAAAATAATTCCCAAGTTCCATTATTTTTG
CAATCAGTCAAATGTATGTCTTTAATGTTTGATCAATTCATAAAGCTGCA
TAAAGCAGCAATGTTTAAAAGTATCAATTTTGAGAAAATGAATATGATGT
TGGAAAAATCAGCAGTCTTGAGAAAAATGGTCTGGAGAAGATAACATTTG
TCCAGAAAAGAAAAAAATGGGGTGTCTAAATGTCCCTAAAAATTTTAGTA
CATGGGTATTAAACAACTTCTCAAAATTGGGGTGTTGGTATGAAAGAAAT
TCTCGAAAACCTTTTTATTACTCGTATGTCCGAGATTTACGTGCAGACGA
CCCCCTGTTTGATGGGTTAATCTAAAGAATCCTACATTTACTAAAAATGG
ACAAAAAGAACGACAAATTTCATAAGAAACAATATGTTTGGCCCTCCGCA
ATGCTGACCCGGCACAGAGCATTTTTTGCTTGTAAAGTCTTTTGAAAGAG
AACAAAAAGAGAATTGTTGTTCGTTTGTTATATGCATCAAGAAAAAGTTT
CTTAATAAACATGGAGTTTCATGTATGAAATAAAGGTCCAAACAAAACTA
TTTGAATTCAAAATTTTCTTTAACAGGGGGGGGGGGGTTAATGAAAAAGT
ATGTAATTTCCTGGAGTATAGTCATTTGTGTAAGCTTCCGTACAGGGGAT
GGGTAAAATGTCATGACAACTTCCATGGCTTTCTTAGGTATTTAAACCTA
AACCTAATCCTGATACCATGATATTTCTTTTAGTGAAAAAGATTTGGAGG
AAGTTGCTGAGCTTATGTCTGTTGGGAAGAGACACTTGATATGCAATGAA
CCTGAGAAAGCATTGGACTACTTTGTTGAACTATGTGAAAGGCTGTAAGT
CAAATGTTTTTTGGTCATTTGAACAGTTAACTTGTAAACTTAAAAGAAAT
CAAAAGTTGTTAAAGGCTGGCAAAGTTAACTCAATTTACAAACCTGAAGA
TGGTCCAAAATTATAATAATTAACCACATTTAAAATCGGTTTGTTTGAAA
TTCGCTAACCTCATTCACCTCTTGAACTTCTTTAAAATCAACTTAGAATT
AGAATTGAATCATTTTTATGTTTAAGTGCTGAATTTTATGGACAGACAGC
AGATGAATGTGCTGATGCTTACTTACACTACGGAAAAACTTTACTTGGAT
TGGCTAGACAAGAGATTGGAGTGTTTTGGAATGCAGTTAAAGAAGGTACC
TAATTCCATTAATTTTTCTGCGCATTTTATTTTCGTGCAGAATATGTGCA
TGAAAACATAAGGAGCGCGAAATAGGCCTATTTTCGTGCACTTGGCCTTG
CGAAAATTAAAGGGTGCGTGAATAAATAACCGTTCTGAACATGTAGAAAT
CTCATCTTAGGGCTCTTTTAATAAAATGAGACCTAGATTCATGGTAAATA
TGTCTAATGAAAATGTCCGACCCAAATCGATTCTAGTCAGACGNTTACTT
TAAAAGCCTTAGGACATGTCCGACCTAAATCAATTTTTGATCGGACAATG
TGTCCGACCACCTAAATATCGTTATTTCGAGCCCTGGAAATACACACTGA
ATAGCAACTTTAAATCGTCAAAAACACTCAGAAAATATTCCAAAAATTGC
ATGATGTGCGAAAATTAAAGGATGCACAAATATTCTATTTTACGAGTTGC
ATGAAAATTAGTGGCACGAAAATAAAAAGCGTGCAAAAATTAGACGCGCA
AAAATGAAAGGCACGTGAAAATTAATGGATTAAAGTAACGCCTACTTCAA
ATGAATGCCTTAGCTTATTATGAGAGATTATGTTTATTTTAAATTTTTTA
AAGCTTTAAAAAGAGTTTGAACAACCCTTTCGCTAAACTCAGGCTATTGA
TGCAATATGCCAAGTTCAAAAGTCACACAGATTTCATATTAATTTTTAAG
CCTTTTTGCTAATTCCTGGTTTTACCAAAGTCCACAGCACATTAAACAGT
GAGACTTTTTTTAGCCCCAGTATTACAAGAAGAGGAAGAAACAGAGGAAG
AGGGAGAAGATCAAGGTAAATTACTTTGTTATTGAAAAACATACTTAGCT
CTGTCCATAGTGCTCTGTGAGAGGGAATTAAAAAGATTAGTTTCACAGTT
GTATGAAGAATTTTCTCAATAGAAATTTCATCTGTTTAGGTGAAGTTATG
GAGACAGAAACAAAAAGTGGAGATAAAGACGATGAAAAGACAGAACAAAA
ACAAGATACCGAAGATGAAGGTGAGACTTCTTTTTTGCATGATAATTCAG
TATAATATCAGTTCTTTGACTAAATTGCTTATTTGCTTGTCCCTGATAAT
CAATTTATCAAAGAATGATCTTCCATACTGAATGTTCCTCTTTTCTTTCC
TTTCAAAGAGGAAGCACTAAAGCCTTCTGAAATAAAAGAGCAAGTATCAC
ATGCAATGAGAGAGGGCAATCTGTATAATGATGCAACCACGGAAGAAGAA
ACTGAACCAGAAGAGGAAGAATCGAAAGAAAATGGAGAATCCACTACAGG
TGAAGATAACATTTCATGTTAATCTTTCATCTTTTTCCTGGAAGTCCAAG
GTGCTCAAAACATATAATTCTGCTTTGGATAGTTAAATTCCAAAATTTCT
CCTTTTGTAGAATCGAAAGAGACAGCAGAGAAGAAGGAAGGTGAAGAACA
AGACGATGATGATTGTGGGGATCAAGATGTATCACACATGGAACTTGCAT
GGGAAATGTTGGAGTTAACTTGCAGTATTTGTAGCAGGTATATTAAGGGA
AAGTGAAATGTATAGTTAATTTATAATTATGGAATTTGACGAACGACAAA
TGAACATCGAGACAGATTGAGAGTACTCTTGTTTAGAAGAAATTAATTTT
TTTATTCACATAGACATTTTCAAAAAATCTTGTTTACAGAATGGTTACTG
AAAAAAGGGACATAGAAAAAGCAGAAGAGATGCTAGCAGAAGCAAAGTAT
GGGCTTGCACAAATCAGCATGGAACAAGGTTAGTTTGTTTCACTACTGAC
CATTCTTTACAGCGTTGTCTGAGATACTAAAAGTATTGATTACTTAAAAC
ACATGTGACTTCCTTCTTGCATTTTCCCAGATTAATCAACCCAACTTTAA
ATCTGTCCATATCCTGAAATTCTACATCAATTTTGTTCGATCAAAACATG
AAATCTTATAGATTCATAAAATTAATGTGGGTTATTTGACACAAATTCTG
TTCTCAATCTATCGACCTCTTTTCCTTTGATTCCCTCTAGAACAATACGA
GAGAGCAATTGAAGATTTCAATTCCTGCCTAGAACATTACACAAAGACAT
TAGATGATAAATTGGATAGACGGATTGCTGAAATCCACTACAATGTCGGC
CTTGCATTTTCATTTGACAAGAAGTTCGAAGAAGCAGTCACTTCTTTCAA
AGAGGCTAAATCACTGTTAGAATCAAGACTCGACGTGTTGAAAGGGAAGA
TTGAAAAACACGAACGGGAAAGTGGTAAAGGGAAAGCTCCTACAGAACTC
TTGGATTGGAACAAAGAAATGAAGGAGTTGGAGGACTTGGTCCTTCTTGA
CATGAATGCAAAGGTATTTTCATCAATTCTCTTAAAACGTTTTGGCGAAA
ACATCCGGCTGAAAATTTCTAACCGAGATTTACAGGCGAGGAATACCAGT
CTCGTTGTTTCTTTCCGATCAGTTTTATATTTTAAAATGCTGAAACTGAG
GTATTGAAGTTTGCGTTTAGGAAATAAGATGTTTACATCATACCGAAAAC
TCTCTTTCAGATCGAGGATGCAGAAGAATCGAAAAAGCAAGCAGATGCAG
AGCTCGTAGCTATGAAAGAGAAAACTAAAGACCTCTTTGGTGCCTTGTCA
TCTGCCACAGGATTCGAAACAGGTTTCGGTTTTGACGAATCAACTCCGAC
AACGGAAGTCAAAGTACACGATGCTACCACGAACGTTCGCAAAGGCTCGG
TAAAGGTAATTCCGTTATCTCCTTTATGATAGAATGAACGTAAAAACCGT
GAATACTCTGTTATCGTCGAAAGACGTCGTCCAGTCTTCAGGTGTAAATA
AGTCGGAATGGGTGGGTGGCGTTGAAGCAAAATAAAACAGTCCCAGTGGA
CAGCTCCAACCTTATTTGAACAAATTGACTCAGTTCCCCTATATTTGCGA
TTAACTTCACGATTAGCAGTCTGTTCTCTAGAGGGGTTTCACTTTATGCT
ATTTAGTTGATGTTAAATTGACATTTGTTCTGTTCGACAGCGACCATCAG
ACGATGAAGGCGTGAGCGACGCAAAGAAGGCCAAAACAGTCGATCAAAAC
TCAAACAATGAAACGGCAACAGCCGGAGAGAAGACAAACGGTGTCGCCCA
CAACGACGAAAAACCAACTTCTGTAGGAGCTTAATTTATTGTCTATTTTT
TTTCTTTTTACGTATTTTGTACCCTTTTCATTTCATTACCTTTTATAATT
ATCTTTCGTTACGGTTTTTATCTTAAAATCTAAAATGTAAAAAAAAACAC
AAGAATTTGTAAATATTAAAGTTAAATGGAACAAGATGATGGCTTTTGAT
TTCCCTATATTTTGAAACGACCTATCTTTGAGGTTCTTCAACTTTGCTTG
TCCGGATGAGTTTTAATTCAGTGTAGTAAATAATTTCGAACAATCTACTG
ATATCGTAATTGCCAATAGACCTTTTCAAAAATTACGTCGCGAACATCGC
TTGCCTCGTATTCAGACAATTACCATGGTGATTATGTTTCTTGAGATATT
AAATGATTTTTTTATGAATAGGAAGTAGTTTTAATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013793XLOC_013793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024561-exon-sc0000502-1575043694:223005..223162TCONS_00024561-exon-sc0000502-1575043694:223005..223162Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1575043694:215419..215529TCONS_00024561-exon-sc0000502-1575043694:215419..215529Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1575043694:215068..215186TCONS_00024561-exon-sc0000502-1575043694:215068..215186Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1575043694:214248..214298TCONS_00024561-exon-sc0000502-1575043694:214248..214298Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1575043694:214043..214123TCONS_00024561-exon-sc0000502-1575043694:214043..214123Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1575043694:213764..213904TCONS_00024561-exon-sc0000502-1575043694:213764..213904Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1575043694:213526..213652TCONS_00024561-exon-sc0000502-1575043694:213526..213652Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1575043694:213285..213373TCONS_00024561-exon-sc0000502-1575043694:213285..213373Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1575043694:212700..213022TCONS_00024561-exon-sc0000502-1575043694:212700..213022Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1575043694:212314..212502TCONS_00024561-exon-sc0000502-1575043694:212314..212502Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1575043694:211475..212022TCONS_00024561-exon-sc0000502-1575043694:211475..212022Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1510915933:223005..223162TCONS_00024561-exon-sc0000502-1510915933:223005..223162Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1510915933:215419..215529TCONS_00024561-exon-sc0000502-1510915933:215419..215529Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1510915933:215068..215186TCONS_00024561-exon-sc0000502-1510915933:215068..215186Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1510915933:214248..214298TCONS_00024561-exon-sc0000502-1510915933:214248..214298Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1510915933:214043..214123TCONS_00024561-exon-sc0000502-1510915933:214043..214123Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1510915933:213764..213904TCONS_00024561-exon-sc0000502-1510915933:213764..213904Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1510915933:213526..213652TCONS_00024561-exon-sc0000502-1510915933:213526..213652Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1510915933:213285..213373TCONS_00024561-exon-sc0000502-1510915933:213285..213373Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1510915933:212700..213022TCONS_00024561-exon-sc0000502-1510915933:212700..213022Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1510915933:212314..212502TCONS_00024561-exon-sc0000502-1510915933:212314..212502Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1510915933:211475..212022TCONS_00024561-exon-sc0000502-1510915933:211475..212022Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1491911889:223005..223162TCONS_00024561-exon-sc0000502-1491911889:223005..223162Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1491911889:215419..215529TCONS_00024561-exon-sc0000502-1491911889:215419..215529Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1491911889:215068..215186TCONS_00024561-exon-sc0000502-1491911889:215068..215186Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1491911889:214248..214298TCONS_00024561-exon-sc0000502-1491911889:214248..214298Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1491911889:214043..214123TCONS_00024561-exon-sc0000502-1491911889:214043..214123Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1491911889:213764..213904TCONS_00024561-exon-sc0000502-1491911889:213764..213904Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1491911889:213526..213652TCONS_00024561-exon-sc0000502-1491911889:213526..213652Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1491911889:213285..213373TCONS_00024561-exon-sc0000502-1491911889:213285..213373Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1491911889:212700..213022TCONS_00024561-exon-sc0000502-1491911889:212700..213022Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1491911889:212314..212502TCONS_00024561-exon-sc0000502-1491911889:212314..212502Clytia hemisphaericaexon
TCONS_00024561-exon-sc0000502-1491911889:211475..212022TCONS_00024561-exon-sc0000502-1491911889:211475..212022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000502supercontigsc0000502:211475..223162 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
222.334	208.687	267.012	276.445	2.05866	1.36552	1.40673	0.045929	4.37088	9.67708	5.06553	4.31757	0.894988	3.13335	6.01056	7.3859	6.42163	5.28646	2.22364	4.3644	2.07273	6.74414	60.8149	49.5999	2.72458	3.91616	4.33327	3.32524	29.4095	37.6587
Blast
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BLAST of TCONS_00024561 vs. Swiss-Prot (Human)
Match: NASP (Nuclear autoantigenic sperm protein OS=Homo sapiens GN=NASP PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.947e-23
Identity = 75/246 (30.49%), Postives = 140/246 (56.91%), Query Frame = 1 
Query:  730 VSHMELAWEMLELTCSICSRMVTEKRDIEKAEEMLAEAKYGLAQISMEQEQYERAIEDFNSCLEHYTKTLDDKLDRRIAEIHYNVGLAFSFDKKFEEAVTSFKEAKSLLESRLDVLKGKIEKHERESGKGKAPTELLDWNKEMKELEDLVLLDMNAKIEDAEESKKQADAELVAMKEKTKDLFGALSSATGFETGFGFDEST------PTTEVKVHDATTN----VRKGSRPSDDEGV-SDAKKAK 1434
            + ++ELAW+ML+L     ++++ ++++ ++A+   A+A   L ++S+E E Y +A+E+F SCL    + L+   DR +AE HY +GLA+ ++ +++EAV  F ++  ++E+R+ VL  ++++ E  S          ++ KE++EL++L L ++  KIEDA+ES++  +   +A+K    +     SS +GF  G G    +      PT      +  T+    VRK  +P ++     DAKKAK
Sbjct:  512 IGNLELAWDMLDL-----AKIIFKRQETKEAQLYAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAH-DRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIENRMAVLNEQVKEAEGSSA---------EYKKEIEELKEL-LPEIREKIEDAKESQRSGNVAELALKATLVE-----SSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAK 736
The following BLAST results are available for this feature:
BLAST of TCONS_00024561 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NASP2.947e-2330.49Nuclear autoantigenic sperm protein OS=Homo sapien... [more]
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