TCONS_00024562 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024562
Unique NameTCONS_00024562
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024562 ID=TCONS_00024562|Name=TCONS_00024562|organism=Clytia hemisphaerica|type=transcript|length=1801bp
CACTTTTTCGCTCAGAACACCACACACGTTCATTTCAATCTAGAAACTGA
TTCACCTTCATCCTTAGACACTTTGGTCTATATATCCATCAACATAAATC
TCTGCTAACATCATATAAAATGGTTGAAGAAAAACCAACAGCGTCAACTG
CTAAAGTTCCAAGTGAAAAAGATTTGGAGGAAGTTGCTGAGCTTATGTCT
GTTGGGAAGAGACACTTGATATGCAATGAACCTGAGAAAGCATTGGACTA
CTTTGTTGAACTATGTGAAAGGCTTGCTGAATTTTATGGACAGACAGCAG
ATGAATGTGCTGATGCTTACTTACACTACGGAAAAACTTTACTTGGATTG
GCTAGAcaagagattggagtgttttgGAATGCAGTTAAAGAAGCCCCAGT
ATTACAAGAAGAGGAAGAAACAGAGGAAGAGGGAGAAGATCAAGGTGAAG
TTATGGAGACAGAAACAAAAAGTGGAGATAAAGACGATGAAAAGACAGAA
CAAAAACAAGATACCGAAGATGAAGAATCGAAAGAGACAGCAGAGAAGAA
GGAAGGTGAAGAACAAGACGATGATGATTGTGGGGATCAAGATGTATCAC
ACATGGAACTTGCATGGGAAATGTTGGAGTTAACTTGCAGTATTTGTAGC
AGAATGGTTACTGAAAAAAGGGACATAGAAAAAGCAGAAGAGATGCTAGC
AGAAGCAAAGTATGGGCTTGCACAAATCAGCATGGAACAAGAACAATACG
AGAGAGCAATTGAAGATTTCAATTCCTGCCTAGAACATTACACAAAGACA
TTAGATGATAAATTGGATAGACGGATTGCTGAAATCCACTACAATGTCGG
CCTTGCATTTTCATTTGACAAGAAGTTCGAAGAAGCAGTCACTTCTTTCA
AAGAGGCTAAATCACTGTTAGAATCAAGACTCGACGTGTTGAAAGGGAAG
ATTGAAAAACACGAACGGGAAAGTGGTAAAGGGAAAGCTCCTACAGAACT
CTTGGATTGGAACAAAGAAATGAAGGAGTTGGAGGACTTGGTCCTTCTTG
ACATGAATGCAAAgATCGAGGATGCAGAAGAATCGAAAAAGCAAGCAGAT
GCAGAGCTCGTAGCTATGAAAGAGAAAACTAAAGACCTCTTTGGTGCCTT
GTCATCTGCCACAGGATTCGAAACAGGTTTCGGTTTTGACGAATCAACTC
CGACAACGGAAGTCAAAGTACACGATGCTACCACGAACGTTCGCAAAGGC
TCGCGACCATCAGACGATGAAGGCGTGAGCGACGCAAAGAAGGCCAAAAC
AGTCGATCAAAACTCAAACAATGAAACGGCAACAGCCGGAGAGAAGACAA
ACGGTGTCGCCCACAACGACGAAAAACCAACTTCTGTAGGAGCTTAATTT
ATtgtctattttttttctttttacgtATTTTGTacccttttcatttcatt
accTTTTATAATTATCTTTCGTTAcggtttttatcttaaaatctaaaatg
taaaaaaaaacacaagaatTTGTAAATATTAAAGTTAAATGGAACAAGAT
GATGGCTTTTGATTTCCCTATATTTTGAAACGACCTATCTTTGAGGTTCT
TCAACTTTGCTTGTCCGGATGAGTTTTAATTCAGTGTAGTAAATAATTTC
GAACAATCTACTGATATCGTAATtgccaatagaccttttcaaaaattacg
tcgcgaacatcgcttgcctcgtattcagacaattaccatggtgattatgt
ttCTTGAgatattaaatgatttttttatgaataggaagtagttttaataa
a
Run BLAST on NCBI

transcript from alignment at sc0000502:211475..223167-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024562 ID=TCONS_00024562|Name=TCONS_00024562|organism=Clytia hemisphaerica|type=transcript|length=11693bp|location=Sequence derived from alignment at sc0000502:211475..223167- (Clytia hemisphaerica)
CACTTTTTCGCTCAGAACACCACACACGTTCATTTCAATCTAGAAACTGA
TTCACCTTCATCCTTAGACACTTTGGTCTATATATCCATCAACATAAATC
TCTGCTAACATCATATAAAATGGTTGAAGAAAAACCAACAGCGTCAACTG
CTAAAGTTCCAAGGTAAGTTCATCCAATCCAAGTAAGTAGATTCGATCTT
TGTTTTTACCTCTACATTCTCCCACTGTCCCACCCCACACCTTTCTTCAC
TTCCTTCCCTTCCAAGAGCAGGTGGGGGTCAATACTTAAAATCTAGGACA
TCTTGGTGATATGGTGGTATACCCAAAAAATGTAAAATTCCTTCAAGTAC
CATTGGGTACTAAAATACGATGCTAGTCAAAAATAGTGTGACATTTTTAT
TTCTCCAAAATAACACCAAATTTAGAATTTTGTCAATAACTGTCTCAAAT
CTTGATATCCTGAAATAAGATTTCAGGAGGTGATAGAGCTAATGAAGACA
AAGCCATGGATATAGGTATCACGTGCGTTTGGTTTGGGAACGCGAAACAC
GAACGCAAACTACCCATGTCTAAACTTTTCAATATATCTCCAGAACTAAC
AGATTTTTTGAAATTCTGTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNTACAATATGTTTTAAGTAAGGCAAAAAAGCTAAGCAAA
GATAGATTTTTAAACAAAACCCATTAAAATGAGCTGTTTTTGAGGTTGAC
AAGCCGCAAAAGCCTGTATTGAGTCAAAAGTGGGGAGAAAAGGCTTTTTG
GGCTGTCAACCTCAAAAAACGCTTCAATAATCATATAAATCCAATTCCAT
AGTCTTTCTGTCTTAAAAACAAATATAATTGAGGTTTACAAATGATTTTA
AAAGAGCTTCTGGCTGTTTCCATCATAAGGCACTTTACCTTGCATTGAAA
TAAACGTTGTTGTCAACCTCAAAACTTGCTCAAATAACAGATATTTCCTT
GGAAAAAGATTTTTAGACGGTCAATAATGATATTTTATAAGCCAAAGTCA
TCATATTGATCTACATTTGTCAAAATTATGCACAAAACTAATGTTAACCT
CATTTTTGGAGCCATTTAATAAAATGTCAACCTCAAATAACACCCTTCAT
ATCAATTTTCAACCCTTTGAGATAATTTCAGAGCTACTTACTTGGAATAC
TTGGAAGTGCTTTCGATGGTCTTCCATCTAGGTGAACAATCCAATGTCCG
CCTGCCGATTATTGATTTGATGTTTGATTGAGTTGGATGCANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTAGGGAGGGAGTTGAACAA
GATTGGCCCACGGGTTGATAAGAAATTATGTCGGATTGACTGTAGGGCAA
CTGATGTTCCTGTGATTCGGGCTTTAACAAAGCACAATCTTCCAAGTCTG
GGTGGGAAAACAGGTCGTAACCCGTCTGACTGGTTGATATTAGGCACAAG
GTTTTCAAGAATCTTCCACGTGTAGATCATGTATCTTTCACGTCTTCTTT
CTAGCGAATAAAGCTTGAATGCCTTCAATCTTGACCAGTATGATTTTTCG
GGGTGAATGATTTTTCGAATGAAGCTCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGGTACAATGAGAGATTTCTT
TAGAGTTTCAGGGGTCTTTCCAGTATCGAGGCATTTTCTCCAAAGGATGA
GAAGAGGTCTTGATAGTGATTTTTTGCAGCGTTTTAGAGCTATAACATAT
CCAAAATGTAATTCAAAAGTCAACTTACAGGGTGTCAAAGAACCCTAACA
GTGTCAACCTCAGGTCATGTTAACCTCAACTTTGGCTCCCACTTCAAAAA
AACGTATCTCGAGTTAGGGTAAACCTCATAAGAAGATACTTATATGCCTA
GAAAGCAAAATTATTCAGCCTAACCATACTAAAGTTTCAGTTGTCAACCT
CAAACTTAGCAAATTTTATGGGGCTAAATGTAAACCTCAACAAAAATGTC
ACAAATACCCCCTCTATTTTTGACCAGCATCATACCCAAAAAAGATGGTA
CCCGCCATATACTCAAATTTGAGAATTCTTAAGTAAATTGGTACTAAAAT
TATAGTAATTTCGTTGTCATTGATATTGTGGCACGTTCTAGGCGTGTTTG
GGATGGGAAATAAGGGGCTTCACTTTTTTTTGCCTGGGGAACAACTTTCT
TATTGGGAAAGGTCAGAAATTCTACTCTAGCCCTTTGGACTTTAAAACTC
AATGCCAATGGTATACCAGTTCTGTTCAAGGCAAAATTTGGAATGCAAAT
CAGGATATTACTTTCAAATACTTTAATCGTAGAAATTTTAGCGAGACTAA
TTTTAGCGTTTTAGCGAGTTTTCCCTATTTTCGCCAAAATAAATCTCGCC
AAAACACGCCGATTCGACAGATCGCTATAATTTATCCACGCGAAAATTTT
TGAAATCGTGATTCGCTGAAATAAATCCAAAAAATCAAGATTTTCCTGAC
TCGCTAATATACGCTATATATAAAATTAGTCTCGCTAAAATTTCTATGAT
TAAAGTAAGGATTACACTTTCATCCTGTATGCTTTCAACGTCAGATGTGG
TTTTGTTGGGTCGTATTATTCGGCAACGCGGCCATGTGGAAAAATTTTAA
CAGAGGGGCTACTGACTTTATTCTGGATGAACAAATATATATAGTTTTCG
AAATGGCAATCGCATGCCGAGAGATATGTTGCAAGTGAGGATATGGGGAT
TTAGGGTCATTGAACTAATTTGAAACTTTTACAGTCAGGGAAATCCCTCA
ATTGCGGTAGTAATTTTTTACTGCAATTGCAGTATAAACGTCACTTTTAC
ATTTTTCATATACCCTAATTGCAGTATATTCAAGAAACAGAATTCAAGAT
TCAAGTAGAAAACAGGCAATCTTTGTACATAATTCATCATATCTTTTTAA
CGAATACAGAAAATACTTTTTCCATAGATCAGATTCTTTAAATAAAGAGA
AGCTTACTTACTCGAACCAGTCGAACCAAATCGAACACAATCGACCGATT
GAAATTCGATTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATTCGATTG
GTTCGATTGTTGTTCGACTGGTTCGATCGTCGATTCCGTTCGATTGAGAT
CGTTTGGCTTTATTCTTGCAGCTTCCCAACATCCAACCTCACAAGCATCA
CAAGCTGAATGAAATTACTTTCGATTTCCCGTAGAAATTATGCAATGAAC
AATCCGGGGGTCAATGAATCGACAATCGAACGCAATCGAACGCAGTCCAA
CATCAATCAAACGCAATCAAATATCAATCGAATCTGAAAATTGCGGTAAT
ATTTGATTGAGATTCGATTGCGTTCGACAATCAAATTTCAATCGGTCGAT
TGTGTTCGATTTGGTTCGACTGGTTCGATCGTCGATTCCGTTCGATTGAG
ATCGTCTGGATATAGCGGTTATAAGCCTTTGTAGGCTAGCCACCAATGAA
AACTGCCGCAATTGCAGTATACTGCAATTGAGGGATTTCCCTGACTGTTT
TTACTAACCAAACATCGAACTCCTATTGCTGCAAAAATTGTGAATGTTCA
AGCAGGTTCAATTATTTTACTCTGAGAACTTTAATCATTCTACAGAGTTA
GGTTAGTTCCATTGTTCGATTGATTTGACAAGTTCGATTAATCAGGTCTG
GTTTTATGAATCTTTTTTAGAGTATTTCATGATTTTTTTTGCAAATTTTC
AAAATTTTTAAGTTTTCTTATTTAAAAAAATAATTCCCAAGTTCCATTAT
TTTTGCAATCAGTCAAATGTATGTCTTTAATGTTTGATCAATTCATAAAG
CTGCATAAAGCAGCAATGTTTAAAAGTATCAATTTTGAGAAAATGAATAT
GATGTTGGAAAAATCAGCAGTCTTGAGAAAAATGGTCTGGAGAAGATAAC
ATTTGTCCAGAAAAGAAAAAAATGGGGTGTCTAAATGTCCCTAAAAATTT
TAGTACATGGGTATTAAACAACTTCTCAAAATTGGGGTGTTGGTATGAAA
GAAATTCTCGAAAACCTTTTTATTACTCGTATGTCCGAGATTTACGTGCA
GACGACCCCCTGTTTGATGGGTTAATCTAAAGAATCCTACATTTACTAAA
AATGGACAAAAAGAACGACAAATTTCATAAGAAACAATATGTTTGGCCCT
CCGCAATGCTGACCCGGCACAGAGCATTTTTTGCTTGTAAAGTCTTTTGA
AAGAGAACAAAAAGAGAATTGTTGTTCGTTTGTTATATGCATCAAGAAAA
AGTTTCTTAATAAACATGGAGTTTCATGTATGAAATAAAGGTCCAAACAA
AACTATTTGAATTCAAAATTTTCTTTAACAGGGGGGGGGGGGTTAATGAA
AAAGTATGTAATTTCCTGGAGTATAGTCATTTGTGTAAGCTTCCGTACAG
GGGATGGGTAAAATGTCATGACAACTTCCATGGCTTTCTTAGGTATTTAA
ACCTAAACCTAATCCTGATACCATGATATTTCTTTTAGTGAAAAAGATTT
GGAGGAAGTTGCTGAGCTTATGTCTGTTGGGAAGAGACACTTGATATGCA
ATGAACCTGAGAAAGCATTGGACTACTTTGTTGAACTATGTGAAAGGCTG
TAAGTCAAATGTTTTTTGGTCATTTGAACAGTTAACTTGTAAACTTAAAA
GAAATCAAAAGTTGTTAAAGGCTGGCAAAGTTAACTCAATTTACAAACCT
GAAGATGGTCCAAAATTATAATAATTAACCACATTTAAAATCGGTTTGTT
TGAAATTCGCTAACCTCATTCACCTCTTGAACTTCTTTAAAATCAACTTA
GAATTAGAATTGAATCATTTTTATGTTTAAGTGCTGAATTTTATGGACAG
ACAGCAGATGAATGTGCTGATGCTTACTTACACTACGGAAAAACTTTACT
TGGATTGGCTAGACAAGAGATTGGAGTGTTTTGGAATGCAGTTAAAGAAG
GTACCTAATTCCATTAATTTTTCTGCGCATTTTATTTTCGTGCAGAATAT
GTGCATGAAAACATAAGGAGCGCGAAATAGGCCTATTTTCGTGCACTTGG
CCTTGCGAAAATTAAAGGGTGCGTGAATAAATAACCGTTCTGAACATGTA
GAAATCTCATCTTAGGGCTCTTTTAATAAAATGAGACCTAGATTCATGGT
AAATATGTCTAATGAAAATGTCCGACCCAAATCGATTCTAGTCAGACGNT
TACTTTAAAAGCCTTAGGACATGTCCGACCTAAATCAATTTTTGATCGGA
CAATGTGTCCGACCACCTAAATATCGTTATTTCGAGCCCTGGAAATACAC
ACTGAATAGCAACTTTAAATCGTCAAAAACACTCAGAAAATATTCCAAAA
ATTGCATGATGTGCGAAAATTAAAGGATGCACAAATATTCTATTTTACGA
GTTGCATGAAAATTAGTGGCACGAAAATAAAAAGCGTGCAAAAATTAGAC
GCGCAAAAATGAAAGGCACGTGAAAATTAATGGATTAAAGTAACGCCTAC
TTCAAATGAATGCCTTAGCTTATTATGAGAGATTATGTTTATTTTAAATT
TTTTAAAGCTTTAAAAAGAGTTTGAACAACCCTTTCGCTAAACTCAGGCT
ATTGATGCAATATGCCAAGTTCAAAAGTCACACAGATTTCATATTAATTT
TTAAGCCTTTTTGCTAATTCCTGGTTTTACCAAAGTCCACAGCACATTAA
ACAGTGAGACTTTTTTTAGCCCCAGTATTACAAGAAGAGGAAGAAACAGA
GGAAGAGGGAGAAGATCAAGGTAAATTACTTTGTTATTGAAAAACATACT
TAGCTCTGTCCATAGTGCTCTGTGAGAGGGAATTAAAAAGATTAGTTTCA
CAGTTGTATGAAGAATTTTCTCAATAGAAATTTCATCTGTTTAGGTGAAG
TTATGGAGACAGAAACAAAAAGTGGAGATAAAGACGATGAAAAGACAGAA
CAAAAACAAGATACCGAAGATGAAGGTGAGACTTCTTTTTTGCATGATAA
TTCAGTATAATATCAGTTCTTTGACTAAATTGCTTATTTGCTTGTCCCTG
ATAATCAATTTATCAAAGAATGATCTTCCATACTGAATGTTCCTCTTTTC
TTTCCTTTCAAAGAGGAAGCACTAAAGCCTTCTGAAATAAAAGAGCAAGT
ATCACATGCAATGAGAGAGGGCAATCTGTATAATGATGCAACCACGGAAG
AAGAAACTGAACCAGAAGAGGAAGAATCGAAAGAAAATGGAGAATCCACT
ACAGGTGAAGATAACATTTCATGTTAATCTTTCATCTTTTTCCTGGAAGT
CCAAGGTGCTCAAAACATATAATTCTGCTTTGGATAGTTAAATTCCAAAA
TTTCTCCTTTTGTAGAATCGAAAGAGACAGCAGAGAAGAAGGAAGGTGAA
GAACAAGACGATGATGATTGTGGGGATCAAGATGTATCACACATGGAACT
TGCATGGGAAATGTTGGAGTTAACTTGCAGTATTTGTAGCAGGTATATTA
AGGGAAAGTGAAATGTATAGTTAATTTATAATTATGGAATTTGACGAACG
ACAAATGAACATCGAGACAGATTGAGAGTACTCTTGTTTAGAAGAAATTA
ATTTTTTTATTCACATAGACATTTTCAAAAAATCTTGTTTACAGAATGGT
TACTGAAAAAAGGGACATAGAAAAAGCAGAAGAGATGCTAGCAGAAGCAA
AGTATGGGCTTGCACAAATCAGCATGGAACAAGGTTAGTTTGTTTCACTA
CTGACCATTCTTTACAGCGTTGTCTGAGATACTAAAAGTATTGATTACTT
AAAACACATGTGACTTCCTTCTTGCATTTTCCCAGATTAATCAACCCAAC
TTTAAATCTGTCCATATCCTGAAATTCTACATCAATTTTGTTCGATCAAA
ACATGAAATCTTATAGATTCATAAAATTAATGTGGGTTATTTGACACAAA
TTCTGTTCTCAATCTATCGACCTCTTTTCCTTTGATTCCCTCTAGAACAA
TACGAGAGAGCAATTGAAGATTTCAATTCCTGCCTAGAACATTACACAAA
GACATTAGATGATAAATTGGATAGACGGATTGCTGAAATCCACTACAATG
TCGGCCTTGCATTTTCATTTGACAAGAAGTTCGAAGAAGCAGTCACTTCT
TTCAAAGAGGCTAAATCACTGTTAGAATCAAGACTCGACGTGTTGAAAGG
GAAGATTGAAAAACACGAACGGGAAAGTGGTAAAGGGAAAGCTCCTACAG
AACTCTTGGATTGGAACAAAGAAATGAAGGAGTTGGAGGACTTGGTCCTT
CTTGACATGAATGCAAAGGTATTTTCATCAATTCTCTTAAAACGTTTTGG
CGAAAACATCCGGCTGAAAATTTCTAACCGAGATTTACAGGCGAGGAATA
CCAGTCTCGTTGTTTCTTTCCGATCAGTTTTATATTTTAAAATGCTGAAA
CTGAGGTATTGAAGTTTGCGTTTAGGAAATAAGATGTTTACATCATACCG
AAAACTCTCTTTCAGATCGAGGATGCAGAAGAATCGAAAAAGCAAGCAGA
TGCAGAGCTCGTAGCTATGAAAGAGAAAACTAAAGACCTCTTTGGTGCCT
TGTCATCTGCCACAGGATTCGAAACAGGTTTCGGTTTTGACGAATCAACT
CCGACAACGGAAGTCAAAGTACACGATGCTACCACGAACGTTCGCAAAGG
CTCGGTAAAGGTAATTCCGTTATCTCCTTTATGATAGAATGAACGTAAAA
ACCGTGAATACTCTGTTATCGTCGAAAGACGTCGTCCAGTCTTCAGGTGT
AAATAAGTCGGAATGGGTGGGTGGCGTTGAAGCAAAATAAAACAGTCCCA
GTGGACAGCTCCAACCTTATTTGAACAAATTGACTCAGTTCCCCTATATT
TGCGATTAACTTCACGATTAGCAGTCTGTTCTCTAGAGGGGTTTCACTTT
ATGCTATTTAGTTGATGTTAAATTGACATTTGTTCTGTTCGACAGCGACC
ATCAGACGATGAAGGCGTGAGCGACGCAAAGAAGGCCAAAACAGTCGATC
AAAACTCAAACAATGAAACGGCAACAGCCGGAGAGAAGACAAACGGTGTC
GCCCACAACGACGAAAAACCAACTTCTGTAGGAGCTTAATTTATTGTCTA
TTTTTTTTCTTTTTACGTATTTTGTACCCTTTTCATTTCATTACCTTTTA
TAATTATCTTTCGTTACGGTTTTTATCTTAAAATCTAAAATGTAAAAAAA
AACACAAGAATTTGTAAATATTAAAGTTAAATGGAACAAGATGATGGCTT
TTGATTTCCCTATATTTTGAAACGACCTATCTTTGAGGTTCTTCAACTTT
GCTTGTCCGGATGAGTTTTAATTCAGTGTAGTAAATAATTTCGAACAATC
TACTGATATCGTAATTGCCAATAGACCTTTTCAAAAATTACGTCGCGAAC
ATCGCTTGCCTCGTATTCAGACAATTACCATGGTGATTATGTTTCTTGAG
ATATTAAATGATTTTTTTATGAATAGGAAGTAGTTTTAATAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013793XLOC_013793Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024562-exon-sc0000502-1575043694:223005..223167TCONS_00024562-exon-sc0000502-1575043694:223005..223167Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1575043694:215419..215529TCONS_00024562-exon-sc0000502-1575043694:215419..215529Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1575043694:215068..215186TCONS_00024562-exon-sc0000502-1575043694:215068..215186Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1575043694:214248..214298TCONS_00024562-exon-sc0000502-1575043694:214248..214298Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1575043694:214043..214123TCONS_00024562-exon-sc0000502-1575043694:214043..214123Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1575043694:213526..213652TCONS_00024562-exon-sc0000502-1575043694:213526..213652Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1575043694:213285..213373TCONS_00024562-exon-sc0000502-1575043694:213285..213373Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1575043694:212700..213022TCONS_00024562-exon-sc0000502-1575043694:212700..213022Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1575043694:212314..212502TCONS_00024562-exon-sc0000502-1575043694:212314..212502Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1575043694:211475..212022TCONS_00024562-exon-sc0000502-1575043694:211475..212022Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1510915933:223005..223167TCONS_00024562-exon-sc0000502-1510915933:223005..223167Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1510915933:215419..215529TCONS_00024562-exon-sc0000502-1510915933:215419..215529Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1510915933:215068..215186TCONS_00024562-exon-sc0000502-1510915933:215068..215186Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1510915933:214248..214298TCONS_00024562-exon-sc0000502-1510915933:214248..214298Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1510915933:214043..214123TCONS_00024562-exon-sc0000502-1510915933:214043..214123Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1510915933:213526..213652TCONS_00024562-exon-sc0000502-1510915933:213526..213652Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1510915933:213285..213373TCONS_00024562-exon-sc0000502-1510915933:213285..213373Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1510915933:212700..213022TCONS_00024562-exon-sc0000502-1510915933:212700..213022Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1510915933:212314..212502TCONS_00024562-exon-sc0000502-1510915933:212314..212502Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1510915933:211475..212022TCONS_00024562-exon-sc0000502-1510915933:211475..212022Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1491911889:223005..223167TCONS_00024562-exon-sc0000502-1491911889:223005..223167Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1491911889:215419..215529TCONS_00024562-exon-sc0000502-1491911889:215419..215529Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1491911889:215068..215186TCONS_00024562-exon-sc0000502-1491911889:215068..215186Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1491911889:214248..214298TCONS_00024562-exon-sc0000502-1491911889:214248..214298Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1491911889:214043..214123TCONS_00024562-exon-sc0000502-1491911889:214043..214123Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1491911889:213526..213652TCONS_00024562-exon-sc0000502-1491911889:213526..213652Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1491911889:213285..213373TCONS_00024562-exon-sc0000502-1491911889:213285..213373Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1491911889:212700..213022TCONS_00024562-exon-sc0000502-1491911889:212700..213022Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1491911889:212314..212502TCONS_00024562-exon-sc0000502-1491911889:212314..212502Clytia hemisphaericaexon
TCONS_00024562-exon-sc0000502-1491911889:211475..212022TCONS_00024562-exon-sc0000502-1491911889:211475..212022Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000502supercontigsc0000502:211475..223167 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.50309e-07	3.42395e-07	4.55457e-08	7.48678e-07	1.05337	0.32475	8.86404e-10	2.97849	5.29526e-09	1.43337e-06	1.92022e-08	0	1.11016e-07	0	0	7.15611e-07	1.2171e-07	3.41596e-06	2.10591e-09	7.98389e-07	5.49785e-07	2.20744e-09	2.75334e-09	5.88121e-10	0.0464229	0.0998218	0	5.81498e-08	2.59284e-09	8.94854e-08
Blast
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BLAST of TCONS_00024562 vs. Swiss-Prot (Human)
Match: NASP (Nuclear autoantigenic sperm protein OS=Homo sapiens GN=NASP PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.558e-23
Identity = 75/246 (30.49%), Postives = 140/246 (56.91%), Query Frame = 3 
Query:  594 VSHMELAWEMLELTCSICSRMVTEKRDIEKAEEMLAEAKYGLAQISMEQEQYERAIEDFNSCLEHYTKTLDDKLDRRIAEIHYNVGLAFSFDKKFEEAVTSFKEAKSLLESRLDVLKGKIEKHERESGKGKAPTELLDWNKEMKELEDLVLLDMNAKIEDAEESKKQADAELVAMKEKTKDLFGALSSATGFETGFGFDEST------PTTEVKVHDATTN----VRKGSRPSDDEGV-SDAKKAK 1298
            + ++ELAW+ML+L     ++++ ++++ ++A+   A+A   L ++S+E E Y +A+E+F SCL    + L+   DR +AE HY +GLA+ ++ +++EAV  F ++  ++E+R+ VL  ++++ E  S          ++ KE++EL++L L ++  KIEDA+ES++  +   +A+K    +     SS +GF  G G    +      PT      +  T+    VRK  +P ++     DAKKAK
Sbjct:  512 IGNLELAWDMLDL-----AKIIFKRQETKEAQLYAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQYLEAH-DRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIENRMAVLNEQVKEAEGSSA---------EYKKEIEELKEL-LPEIREKIEDAKESQRSGNVAELALKATLVE-----SSTSGFTPGGGGSSVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESPRKDDAKKAK 736
The following BLAST results are available for this feature:
BLAST of TCONS_00024562 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NASP2.558e-2330.49Nuclear autoantigenic sperm protein OS=Homo sapien... [more]
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