TCONS_00024569 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024569
Unique NameTCONS_00024569
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length420

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024569 ID=TCONS_00024569|Name=TCONS_00024569|organism=Clytia hemisphaerica|type=transcript|length=420bp
ATGAGAGACTCTTACACGGAAAAAAGTGGATTTAAACAAATTGTTACCAA
TAACTAAGTGCGTGACATTTTGTGCACAAGATTTAACATATCGCAATGAA
ACGTCGGGGCTCAGGTAACTGATGAAAGGTTctagttgtttttgttttgt
aataAATGGATAAACCTTTGTAAATAAAGTTATGGTTACATTATCTATAG
TaattccaaaaagaaaatttcctaTTTATACAAAACGATTGTATTCTGTA
TGTCTACCAATGCCCTCAGAGATTCTCAATGATTCACTCTTTgctcagaa
aaaaaacaaataacagCACCATACAGGTCCCTCATAAATACAAAGTTTTA
AATACTGCAACCTATCCTTATATAAGCTTATTTTGATGAACAAACGATCT
TTTGCAGTGTATTTTTATCT
Run BLAST on NCBI

transcript from alignment at sc0000502:122885..123304

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024569 ID=TCONS_00024569|Name=TCONS_00024569|organism=Clytia hemisphaerica|type=transcript|length=420bp|location=Sequence derived from alignment at sc0000502:122885..123304 (Clytia hemisphaerica)
AGATAAAAATACACTGCAAAAGATCGTTTGTTCATCAAAATAAGCTTATA
TAAGGATAGGTTGCAGTATTTAAAACTTTGTATTTATGAGGGACCTGTAT
GGTGctgttatttgttttttttctgagcAAAGAGTGAATCATTGAGAATC
TCTGAGGGCATTGGTAGACATACAGAATACAATCGTTTTGTATAAAtagg
aaattttctttttggaattACTATAGATAATGTAACCATAACTTTATTTA
CAAAGGTTTATCCATTtattacaaaacaaaaacaactagAACCTTTCATC
AGTTACCTGAGCCCCGACGTTTCATTGCGATATGTTAAATCTTGTGCACA
AAATGTCACGCACTTAGTTATTGGTAACAATTTGTTTAAATCCACTTTTT
TCCGTGTAAGAGTCTCTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013799XLOC_013799Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024569-exon-sc0000502-1491911889:122885..123304TCONS_00024569-exon-sc0000502-1491911889:122885..123304Clytia hemisphaericaexon
TCONS_00024569-exon-sc0000502-1510915933:122885..123304TCONS_00024569-exon-sc0000502-1510915933:122885..123304Clytia hemisphaericaexon
TCONS_00024569-exon-sc0000502-1575043694:122885..123304TCONS_00024569-exon-sc0000502-1575043694:122885..123304Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000502supercontigsc0000502:122885..123304 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.03538	5.73874	10.6612	15.2729	0.453495	0	0	0	0.425067	1.05303	1.53314	0.335943	0.111825	0.69679	0.668332	0.717223	0.757337	0.646871	0	0	0.975409	0.951541	2.50623	1.92799	0.361051	0.161115	0.461109	0.984216	0.746493	0.19014
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024569 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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