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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024585 ID=TCONS_00024585|Name=TCONS_00024585|organism=Clytia hemisphaerica|type=transcript|length=2956bp TATATCAAGTGCTTGTTCTTGCCACGATGAATGAAATGCTTGTTGACATA CTGCTAACTTTATTATTACTGTTTTAGAATTATATTATAATATAggtgaa agaaaattttaagaatgcCTTTAATTGTGTTATGTGGATTTCCATCGTCT GGGAAAACAAAGACACGTAAAGAACTGGTTAattatttggaaaataaaaa tatcaaagtgaAAATCATCAGTGAAAATGTTTTGGTTGacgaaaaaaaga atgaaatataTTCAGaCTCCACTAAAGAGAAATCTATTAGGTCAGCATTA AGAGCTGCAGTTGAGCGGGATATCACACGAGATACAGTCACCATTGTTGA TGGGTTGAATTACTTGAAAAGTTTGAGATACGAAATGCATTGTATCGTTA AAGCAGAGAAAACTCTGCATTGTGTCATCTATTGTGGAATAACCAAAGAA AAATGTAAAGAATGGAACGAAAGtcgaaatgaaaatgaaaaatatagagA TGAAGTACTTGATGGATTGTTTATGCGGTTTGAACCACCTGATAGTAACA AAAGATGGGATTCTCCACTCTTCACTATAACACAAGAAACTCCATTGAGT TTTGATGATGTTTATGACTCTTTATACAAACGCAGTGCCCCACCTCCAAA CCAATCAACAATACCTACTCCACTGAGTAGCGGGAATTTCATGCATGATT TAGATCAAGTTACTCAGTCTATTATCAAAGAGATTTTGGACATGCAGAAA ACTGCTATGATAGGTGATAGTATCAAGATAACAGATTCAACCGAGAAACT TGTTCTGTTAAAGCAACTGAATATGCCAGAGTTGAGAAGAATTAAACGCC AGTTTATCTCATACGCAAAAATGCATCCAGTTGAGGACATGACTAAGCTT AGAAATATGTTTGTACAATTTTTGAATAATACCATACGATGAGTTACTAT TATTTTTTAtaatcatttttagattttacacTACTTTAGTATTATTtaat aaacttttgttttttcgcTTTTACTACCGGCTACCTATGCCAAAGATTTT GTCTTGTTATTGGGATACTTCTAGATAATCCCATCGACACAACTGCCAGG ACTTTTCCTTCATATTAAAcaaattattcaaatattttacACTGATTTGC AACTTTTTTGAGAAGATTTCTATACCGGGACTTTAAGATTATGTGTACTC ATTATAATAATATGCTTTATTCTAGTTTAAATACAAAGTATGTctataaa tgaaataataacATTACAATTTGGAAATTATTCCAATTTTGTTGGGACCC ATTATTGGAATTCTCATCAAAAACGATTATTAGAAAGAGAAAACTCTACA GAAGATAATCGAAATTACATCACTAAACTTTTCAGAGAAAGTCAGTCAAG TCGCACACGTTTTGTGCCTCGGgcaatttgttttgatctgaaaaccAAGC TGCAAACATTAAAACAAGATGGTACCTTTGCTGATGAGGATGATATTAGT GATGGATTCACAACTGGAGCACAAGATGTAGGTGACATTGTCACTTACAA TGAGCCTAAAATTGAGCAAAACGATTTCGTAAAACAGGTACAATCAGGAG AATTCGATCAAAATGGCaaagtaaaatttgaatttgaatcagAAGTTAAA ACATGGAGTGATTATATGACGTATGAGTTGGATAACCACTCCATACAACT TTTATCAGAGAACTATAATGATGGggatgatttcaaattttttggtaaGG GACAAGATGAgtataaaaatattgaagatgACTTTGAGGATTACCTTCAT TACTGGGCTGAAGAATGTGATTATTTAGAAGGATTTCAGCTTATGAGTGA CCTCCATAACGGTTACACTGGTTTACAATCTAAAGTATTGGAATATCTTG CGGACGATTACAACAAGAAAAGTAGACTCAGTTTTATGAACTGGTCAACC AGCACCACCTCCAAAGATGAAAAAGACGATTTTGACGTCATTTACCAATA CCTGAATGTGGCTTTATCACTTCAAACAATGAAGAATTATAATTCATTGT CAGTGTTTCAAGGAATGCAATCAGATTATTTTAAAAGCTGTGATGGTGGA ATACAAATCCCGTATGTGGAATACCAGAATGACTTGGCATACCATACCAG TGCTATACTTGCAGCAGCTCTAGACAGCACTACCATTCCACTCTACCAAA CCCAGGGAACAATGACTATGTCTGAGTTATGCCACCACGTTTCACATGGA AAATGGAAACTGGCTGGTACATCATTCGGTCTGCCTCTACAAGGTAGTCT CAGTGATGGCAACACTCTATTTGATACCATGTTATCAGCTAAAGGATTCT ACAACGGAATGTCAACTTGCTTATTCCCGAATCTGAAAGATGTTGCTTTG AAACCGAATTCTCAACTCGTTGTTCTTCAGAATTTATCATCAGATTTGGT ATGTCCTGATCAAATTGATAGCAAGATTCTCCAAGGGCTTGGATTGAATC GTAACGTTTTTAACAGGCACCCAATGTCAGTTTTGGAGTATTTTAGTGAG AGATTCTACCCGTGTAAAACAACATTGACCAAATTGTATTACAGCACTGA CAAATTGAGACAAGATCAACCTTTCCCTGATTTGATCAAAGGTGAAAAAA ATCCAACTACGTTTTCTTCGCTGTACACATCACCatgtttttatgatttt ttacatggAATCGTGATGGCTTTGAGGAGAATGAATTTACACAAAGTTCA CGCTATACAAGAGTTTGGCTTGGATCGGGACATTATTACTGAGCTCACTG AAGATTTAGTACAGATTGCTCAAACGTATAATTATGAGAAAGCATTCCAT GAACTGGAAGaatgaaaatcattttttgtgaaatcagCAATCTTTAGTTC TTCCTTGGTGGGATGATCTACTTAATTATACGTATTATTACATACTTAAT TATTAN Run BLAST on NCBI transcript from alignment at sc0000504:95471..101410+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024585 ID=TCONS_00024585|Name=TCONS_00024585|organism=Clytia hemisphaerica|type=transcript|length=5940bp|location=Sequence derived from alignment at sc0000504:95471..101410+ (Clytia hemisphaerica) TATATCAAGTGCTTGTTCTTGCCACGATGAATGAAATGCTTGTTGACATA
CTGCTAACTTTATTATTACTGTTTTAGAATTATATTATAATATAggtgaa
agaaaattttaagaatgcCTTTAATTGTGTTATGTGGATTTCCATCGTCT
GGGAAAACAAAGACACGTAAAGAACTGGTTAattatttggaaaataaaaa
tatcaaagtgaAAATCATCAGTGAAAATGTTTTGGTTGacgaaaaaaaga
atgaaatataTTCAGGTATAGtagatattttgatatttttaaatgttATA
GCAGGGTCTTTCTACAAAATCAAATTGATTCTTAGCAAATAGGTACCGTg
aagtggagggaaacttgcatagccctcaaattaaatgaatgacctggctg
gtcattaaatagaaagttaaatcaaaacaaaaatggtagagtagagctgc
gggTGAGCCgaatagttcatttgttttgaaattttactgctttgattggt
cagtcatttgatggctatgcaagtttccctccactgatgcaagttacacG
ACTTCACAGTAGGATATACATTTCTGATTTCATCTTTCAAGGAAATAGTG
CAAAAGCAACTTCTCATAAAAGAAATGTCTTGATATTGGatcattatttt
gattttaaagtgATTTTTACCAAAACAAGAGCAGCAAATTTGaatcttat
ttttgttttcttttagaCTCCACTAAAGAGAAATCTATTAGGTCAGCATT
AAGAGCTGCAGTTGAGCGGGATATCACACGAGATACAGTCACCATTGTTG
ATGGGTTGAATTACTTGAAAAGTTTGAGATACGAAATGCATTGTATCGTT
AAAGCAGAGAAAACTCTGCATTGTGTCATCTATTGTGGAATAACCAAAGA
AAAATGTAAAGAATGGAACGAAAGtcgaaatgaaaatgaaaaatatagag
ATGAAGTACTTGATGGATTGTTTATGCGGTTTGAACCACCTGATAGTAAC
AAAAGATGGGATTCTCCACTCTTCACTATAACACAAGAAACTCCATTGAG
TTTTGATGATGTTTATGACTCTTTATACAAACGCAGTGCCCCACCTCCAA
ACCAATCAACAATACCTACTCCACTGAGTAGCGGGAATTTCATGCATGAT
TTAGATCAAGTTACTCAGTCTATTATCAAAGAGATTTTGGACATGCAGAA
AACTGCTATGATAGGTGATAGTATCAAGATAACAGATTCAACCGAGAAAC
TTGTTCTGTTAAAGCAACTGAATATGCCAGAGTTGAGAAGAATTAAACGC
CAGTTTATCTCATACGCAAAAATGCATCCAGTTGAGGACATGACTAAGCT
TAGAAATATGTTTGTACAATTTTTGAATAATACCATACGATGAGTTACTA
TTATTTTTTAtaatcatttttagattttacacTACTTTAGTATTATTtaa
taaacttttgttttttcgcTTTTACTACCGGCTACCTATGCCAAAGATTT
TGTCTTGTTATTGGGATACTTCTAGATAATCCCATCGACACAACTGCCAG
GACTTTTCCTTCATATTAAAcaaattattcaaatattttacACTGATTTG
CAACTTTTTTGAGAAGATTTCTATACCGGGACTTTAAGATTATGTGTACT
CATTATAATAATATGCTTTATTCTAGTTTAAATACAAAGTATGTctataa
atgaaataataacATTACAATTTGGAAATTATTCCAATTTTGTTGGGACC
CATTATTGGAATTCTCATCAAAAACGATTATTAGAAAGAGAAAACTCTAC
AGAAGATAATCGAAATTACATCACTAAACTTTTCAGAGAAAGTCAGTCAA
GTCGCACACGTTTTGTGCCTCGGgcaatttgttttgatctgaaaaccAAG
CTGCAAACATTAAAACAAGATGGTACCTTTGCTGATGAGGATGATATTAG
TGATGGATTCACAACTGGAGCACAAGATGTAGGTGACATTGTCACTTACA
ATGAGCCTAAAATTGAGCAAAACGATTTCGTAAAACAGGTACAATCAGGA
GAATTCGATCAAAATGGCaaagtaaaatttgaatttgaatcagAAGTTAA
AACATGGAGTGATTATATGACGTATGAGTTGGATAACCACTCCATACAAC
TTTTATCAGAGAACTATAATGATGGggatgatttcaaattttttggtaaG
GGACAAGATGAgtataaaaatattgaagatgACTTTGAGGATTACCTTCA
TTACTGGGCTGAAGAATGTGATTATTTAGAAGGATTTCAGGTAAGGTTTC
ACATATTTATCTTAAAATGGAAatcttaaattgattttgaaagaaGACTA
GAATGCTGAAAGCATAGACTATTTGGTTATGAATCCTTTTCTCGCCAACA
CTTGTAACAAAGATATTATAAAGATGCATCTTGAGTCTCTTCGAAATCCA
AAGTTTGTCAAAGTTTGTCAAGAATAACATTGTGAtgttaaaagtcaaat
ttcaaagaaaaaaaaatgaaatttaattttaaagggCCTCCAAATTCATC
TGTTTTTGAGTAACTTTCTTGTTATTCTGGTTATTAATTCTTCTGTCATT
TTCTAAATTCTGTATCAATATTATGTTCAAGATCATTCAAAAAGTAAAgt
ctgaattgaaattgaaccAGATCATGGTTTTGGTGTCTTTCATCAAGGAT
TTTTCgtttctctttctttttttaatgtGTATTCGACATCTATTTCTGTA
CTTTGTTAATAGCTTATGAGTGACCTCCATAACGGTTACACTGGTTTACA
ATCTAAAGTATTGGAATATCTTGCGGACGATTACAACAAGAAAAGTAGAC
TCAGTTTTATGAACTGGTCAACCAGCACCACCTCTAAAGATGAAAAAGAC
GATTTTGACGTCATTTACCAATACCTGAATGTGGCTTTATCACTTCAAAC
AATGAAGAATTATAATTCATTGTCAGTGTTTCAAGGAATGCAATCAGATT
ATTTTAAAAGCTGTGATGGTGGAATACAAATCCCGTATGTGGAATACCAG
GTAGCTTTTTTATGTGAAATTATGATAAATCCACAGTCGCAATGAATCAT
ATATCAGGTATCAGGGTTGATCGCATTCCAATAGCAGGTTAAGGCCTATA
AGTCTAAACTTTCCTTTTTTATGCAGAGTTTCGAAAGTGTTGAATAGAAC
TTTTCAGTCAGACAAAAGATTACCATAAGTCAAAAATGCTTACTTTCAAG
AGGCAAAGTTAGTTTCTAATCAGTCTTGATGCAAATTTAATCAGATATTA
TCGATCAGTTAATTAACTTCAGTAAGTTCAGGTAATTATAAGACAATTTA
TTAATCTAATACCACGATAGTGTCTATGTTGCTGCATTGATTGTTGATTA
AACCTGGGTGATTTTGCATTTGAAAACGATTTAAAACCTTTTCTATAATA
AATTTATTTGGTATTTGTATCTTGATTGAGTTTGAGGAACTATGTCTATA
CACAGAGTTGTTATGTTATTTATCAGGCCGAGTCTATTATTCAGAAAAGA
AGTGACGTGTTTTTGATAgagagaaaatcagacttttcactaaaagaaca
ccccccttctcacagacccactggcaATCCTTCCCACggtaaaattgtcc
aaaatatcatccccggtggaaaataattatcaatttttgtccccactgat
aataaccaaataaaccaatcctcactgcaaaatattatgctattttccca
tCCCCGCTGACTTTtctagtttgaaaataaaataattgaaTCCCCAGCCA
TAACGAGTTTCAGTCAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAG
GATTTTTCgtttctctttctttttttaatgtGTATTCGACATCTATTTCT
GTACTTTGTTAATAGCTTATGAGTGACCTCCATAACGGTTACACTGGTTT
ACAATCTAAAGTATTGGAATATCTTGCGGACGATTACAACAAGAAAAGTA
GACTCAGTTTTATGAACTGGTCAACCAGCACCACCTCCAAAGATGAAAAA
GACGATTTTGACGTCATTTACCAATACCTGAATGTGGCTTTATCACTTCA
AACAATGAAGAATTATAATTCATTGTCAGTGTTTCAAGGAATGCAATCAG
ATTATTTTAAAAGCTGTGATGGTGGAATACAAATCCCGTATGTGGAATAC
CAGGTAGCTTTTTTATGTGAAATTATGATAAATCCACAGTCGCAATGAAT
CATGGGGTATCAGGGTTGATCGCATTCCAATAGCAGGTTAAGGCCTATAA
GtctaaacttttcttttttatccaGAGTTTTGAAAGTGTTGAATAGAACT
TTTCAGTCAGACAAAAGATTACCATAAGTCAAAAATGCTTACTTTTAAGA
GGCAAAGTTAGTTTCTAATCAGTCTTGATGCAAATTTAATCAGATATTAT
CGATCAGTTAATTAACTTCAGTAAGTTCAGGTAGTTATAAGACAATTTAT
TAATCTAATACCACGATAGTGTCTATGTTGCTGCATTGATTGTTGATAGT
CCTAGTGATTTAAACCTGGGTGATTCGGATTTGAAAACGATTTAAAACCT
TTTCTATAATAAATTTATTTGGTATTTGTATCTTGATTGAGTTTGAGGAA
CTATGTTTACACACAGAGTTGTTATGTTATTTATCAGGCCAAGTCTATTA
TTCAGAAAAGAAGTGACGTGTTTTTGCTAgagagaaaatcagacttttca
ctaaaagaacacccccttctcatagacccactgggaatccttcccactga
aaaattgtccaaaatatcatccccggtggaaaataattatcaatttttgt
ccccactgataataaccaaataaaccaatcctaaCTGCAAAAattatgct
attttcccatCCCCGCTGACTTTtctagtttgaaaataaaagaattgaat
CCCCAGCCATAACGAGTTTCAGTcaattatttttatccccaaaaaatcct
actgggtctgtgagaagagggtgtaaaAGAGTTACCATGATATAATTTTT
ATCGACTTTAGAATGACTTGGCATACCATACCAGTGCTATACTTGCAGCA
GCTCTAGACAGCACTACCATTCCACTCTACCAAACCCAGGGAACAATGAC
TATGTCTGAGTTATGCCACCACGTTTCACATGGAAAATGGAAACTGGCTG
GTACATCATTCGGTCTGCCTCTACAAGGTAGTCTCAGTGATGGCAACACT
CTATTTGATACCATGTTATCAGCTAAAGGATTCTACAACGGAATGTCAAC
TTGCTTATTCCCGAATCTGAAAGATGTTGCTTTGAAACCGAATTCTCAAC
TCGTTGTTCTTCAGAATTTATCATCAGATTTGGTATGTCCTGATCAAATT
GATAGCAAGATTCTCCAAGGGCTTGGATTGAATCGTAACGTTTTTAACAG
GCACCCAATGTCAGTTTTGGAGTATTTTAGTGAGAGATTCTACCCGTGTA
AAACAACATTGACCAAATTGTATTACAGCACTGACAAATTGAGACAAGAT
CAACCTTTCCCTGATTTGATCAAAGGTGAAAAAAATCCAACTACGTTTTC
TTCGCTGTACACATCACCatgtttttatgattttttacatggAATCGTGA
TGGCTTTGAGGAGAATGAATTTACACAAAGTTCACGCTATACAAGAGTTT
GGCTTGGATCGGGACATTATTACTGAGCTCACTGAAGATTTAGTACAGAT
TGCTCAAACGTATAATTATGAGAAAGCATTCCATGAACTGGAAGaatgaa
aatcattttttgtgaaatcagCAATCTTTAGTTCTTCCTTGGTGGGATGA
TCTACTTAATTATACGTATTATTACATACTTAATTATTAN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00024585-exon-sc0000504-1491911889:95471..95735 | TCONS_00024585-exon-sc0000504-1491911889:95471..95735 | Clytia hemisphaerica | exon |
TCONS_00024585-exon-sc0000504-1510915933:95471..95735 | TCONS_00024585-exon-sc0000504-1510915933:95471..95735 | Clytia hemisphaerica | exon |
TCONS_00024585-exon-sc0000504-1575043694:95471..95735 | TCONS_00024585-exon-sc0000504-1575043694:95471..95735 | Clytia hemisphaerica | exon |
TCONS_00024585-exon-sc0000504-1491911889:96187..97760 | TCONS_00024585-exon-sc0000504-1491911889:96187..97760 | Clytia hemisphaerica | exon |
TCONS_00024585-exon-sc0000504-1510915933:96187..97760 | TCONS_00024585-exon-sc0000504-1510915933:96187..97760 | Clytia hemisphaerica | exon |
TCONS_00024585-exon-sc0000504-1575043694:96187..97760 | TCONS_00024585-exon-sc0000504-1575043694:96187..97760 | Clytia hemisphaerica | exon |
TCONS_00024585-exon-sc0000504-1491911889:99436..99723 | TCONS_00024585-exon-sc0000504-1491911889:99436..99723 | Clytia hemisphaerica | exon |
TCONS_00024585-exon-sc0000504-1510915933:99436..99723 | TCONS_00024585-exon-sc0000504-1510915933:99436..99723 | Clytia hemisphaerica | exon |
TCONS_00024585-exon-sc0000504-1575043694:99436..99723 | TCONS_00024585-exon-sc0000504-1575043694:99436..99723 | Clytia hemisphaerica | exon |
TCONS_00024585-exon-sc0000504-1491911889:100582..101410 | TCONS_00024585-exon-sc0000504-1491911889:100582..101410 | Clytia hemisphaerica | exon |
TCONS_00024585-exon-sc0000504-1510915933:100582..101410 | TCONS_00024585-exon-sc0000504-1510915933:100582..101410 | Clytia hemisphaerica | exon |
TCONS_00024585-exon-sc0000504-1575043694:100582..101410 | TCONS_00024585-exon-sc0000504-1575043694:100582..101410 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000504 | supercontig | sc0000504:95471..101410 + |
Blast
BLAST of TCONS_00024585 vs. Swiss-Prot (Human)
Match: MSTO1 (Protein misato homolog 1 OS=Homo sapiens GN=MSTO1 PE=1 SV=1) HSP 1 Score: 174.481 bits (441), Expect = 1.233e-45 Identity = 137/578 (23.70%), Postives = 246/578 (42.56%), Query Frame = 1
Query: 1249 NEIITLQFGNYSNFVGTHYWNSHQKRLLERENSTEDNRNYITK-LFRESQS--SRTRFVPRAICFDLKTKLQTLKQDGTFADEDDISDGFTTGAQDVGDIVTYNEPKIEQNDF------------------VKQVQSGEFDQ------NGKVKFEFESEVKTWSDYMTYELDNHSIQLLSENYNDGDDFKF--FGKGQDEYKNI--EDDFEDYLHYWAEECDYLEGFQLMSDLHNGYTGLQSKVLEYLADDYNKKSRLSFMNWSTSTTSKDEKDDFDVIYQYLNVALSLQTMKNYNSLSVFQGMQSDYFKSCDGGIQIPYVEYQNDLAYHTSAILAAALDSTTIPLYQTQGTMTMSELCHHVSHGKWKLAGTSFGLPLQGSLSDGNTLFDTMLSAKGF--YNGMSTCLFPNLKDVALKPNSQLVVLQNLSSDLVC-PDQIDSKILQGLGLNRNVFNRHPMSVLEYFSERFYPCKTTLTKLYYSTDKLRQDQPFPDLIKGEKNP----------------TTFSSLYTSPCFYDFLHGIVMALRRMNLHKVHAIQEFGLDRDIITELTEDLVQIAQTYN 2832
E++TLQ G+++ FVG H+WN L +S E L+R ++ + + PR I DLK L +LK++G + + G + T+ E +N + VK + +G+ K E+ ++ WSD++ L SI ++ + +DG+ + FG+G+ K +++ ED LH++ EECDYL+GFQ++ DLH+G++G+ +K E L D+Y+ + + W + IY+ LN A L + ++SL + + + PY+ Y L +H SAILA ALD+ T+P ++M L +S K+ +P L+ G +L D+++ G + +S C P+ + +Q VVL+ + D C Q+ L+ +L + ++ P + + L + R P+P L P F +L +S + L + L +++L + + + G++ D + EL ++L +AQ Y
Sbjct: 6 REVLTLQLGHFAGFVGAHWWNQQDAALGRATDSKEPPGELCPDVLYRTGRTLHGQETYTPRLILMDLKGSLSSLKEEGGLYRDKQLDAAIAW----QGKLTTHKEELYPKNPYLQDFLSAEGVLSSDGVWRVKSIPNGKGSSPLPTATTPKPLIPTEASIRVWSDFLRVHLHPRSICMIQKYNHDGEAGRLEAFGQGESVLKEPKYQEELEDRLHFYVEECDYLQGFQILCDLHDGFSGVGAKAAELLQDEYSGR---GIITWGLLPGPYHRGEAQRNIYRLLNTAFGLVHLTAHSSLVCPLSLGGSLGLRPEPPVSFPYLHYDATLPFHCSAILATALDTVTVPYRLCSSPVSMVHLADMLSFCGKKVVTAGAIIPF--PLAPGQSLPDSLMQFGGATPWTPLSACGEPS----GTRCFAQSVVLRGI--DRACHTSQLTPGTPPPSALHACTTGEE---ILAQYLQQQQPGVMSSSHLLLT--PCRVAPPYPHLFSSCSPPGMVLDGSPKGAAVESIPVFGALCSSSSLHQTLEALARDLTKLDLRRWASFMDAGVEHDDVAELLQELQSLAQCYQ 563
The following BLAST results are available for this feature:
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