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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024611 ID=TCONS_00024611|Name=TCONS_00024611|organism=Clytia hemisphaerica|type=transcript|length=4043bp
TCTTTAGATCTTATATTTTTAAGCTACTAACTTTTTCACAAACTAATGCT
AAAATAGGGGTAATAATCTCTCGCAGGCTTCATCAGATTAAAGGTAATTG
ATTTCGGCTTATCGATCTTAATAATCCATTGACGACAGACAGCTCGGTAT
CATTTATATCTATTTATGGGAAAGGGTGTGTTTGAAAAGAATCTATATTG
AGCCTCTTTTATCGTATACATTAGATAATCAGATATTTAAAGTAAAAGTG
TGTATACTGATGTCTAATGTATTTATTAAATTAAGCTTTGAAGTGATtcg
tattttttttatatagacAAACGTGACTCCTCCTAAAAAGGAAACTATTG
ATTCTGTGGGCATCTTTGAGatcagttttttaaagtttttatatcCTTTA
AAGCAAGTTCATTGCTTAAAGAATTTTGTTTATGATAAAGAAGGCGAACC
TTTTATGCTGACCAAgcagaatttctcaaaattagaaattataTGCAATG
TCCTTACTTTTTTACTTCACTGttctcaaaaatatcaaacaatAAATTTC
TGCTAACGTTGATTcaagttgatattttttaccATAGCTCAGATAAAAAC
CCTTGCTCTGGAAGCCTTtagtttctttctattgttaacatctttcttta
aagatgtattttgttcgatttttgaTCATGTAATttaaatagaccaatcc
caagaaaagttttggtaacgtgatcaaaaactgagcaagtCGATTTGTTA
ACCATTGttcttttataaagaaaaggcAAAGTAAAAAGTTATAAACAATT
GGCTTTCAGACCcgagttttttatacggactaagATTTTACTTATATACC
TGccaacaacaataaaagatcAGCTCAATAGATAAATTATCATCAGTGTT
CATTATACTAATAACCACTAATTGCCAATTTTCTTGCATAGTTAGCCAAG
ATCTCCTGTCACGCGCCTCTAATAGAGAACATGTTTTAGCAGCCGTTGTT
TTTTAGAATAGAGGCGTATTTTGAATCTCACATTGTCATAAATTTAAGAA
GACTTGGCACTAGTCCTcgtataatatttcttttcatttgccTTGTTTTT
AGATTTGGAATACCATATCGAGTGATGCCAAAGACTTTATATCTCAACTG
TTAGTTGCTGATCCTTTGAAGCGCTTAGATGCTGTCACGGCGTCTACTAA
CAAATGGGTTAGATCACAACCGCCTCTCCACAAGCGTAATGCTGAATCca
aacaaacacaaaaacgACAAAACACTCGTCTACGGCTCCACTCTAATATA
AATTCGGTTAGTCGACTGAAAACTAAACACGGTTTGGAATCTTTCGAAGA
TGAAAGTTCGATGATGAGTGATGGTTCTTGGACTaattatatgaaaaata
aagCGTCGCCTTTATATAAACGTCAACGATCGTCTAACGGTAATATTGTT
TTACCGATCACTGGTTTCCAGGGTAACGCTATTACTAAGGATGCCATTTT
GGATGATAATGGTAGCACTATGTCACCTAGTAACATTGATTCCGTCCTAG
CAACGGAGGATTCGAATTCTCAAGTTAGTAGTCAGTTTGGTACCATGCAA
TTGTATTATTATAAAAACATGATGGCTGCCCAAACTCCGGATGAGAAGCA
AAGAACAAGACAAGAATATTTAGATTATATGTCAGCAAATGAGCTTAAGC
TCCCTATACAATTACCTGTTGTAATGGGTCCGGGAGGCGCTAAAGAGCCG
ATGATGGCTCAGAACGGTttgattttaccaaaagttGGATCACTCAAGGA
ACGTAAGATTTCAGTCCATGACCAGTTTGAGAACATTGACGAGGAATCAG
AGGATGGGCTGGAGTCTAAAGGAATGGGGCTAACTAAATTAGACCGGATG
TACGGGAATTCCGGCTACACAAGTTCGGTAGCATCCGGTGGTAGTTTGAA
ATCAACGCAAGTGCCAGTTGAGATTTCAAACGCCAGTTATATCGAGAAAG
TAGGTGTTTGGCTGAATGATAGCAAAGACGGTTCTTCGCAACAACATGGG
CACAAATATAAACCCTTAACTACGGACAGTATTTTATCCGGACGGACAAT
ATCTCAAAAAAGTGGTTTTACCAATGTGACAGGTAGTGAACATTCACAGG
CAAGTAGTTTTAATCGTGTCGTGCTACCTAGGACATCATCTAAGAATAAG
AAATATTCATTACAGAGTGCAGACGGTGCCAATTCTTTTCATTCGCACTC
ATTTTACTCGAATGCTACGTCAACGACTGATTTATTACCGCCCGCTCCGC
CCTCGATAGCTTCTTCTTCGAACGGTACTATACCCCGTTTTATGAACGAT
CCGATGATCAATATACGCCCGGGCGGTGGATCCTTCAACTCCGCGGCTTC
TTATCAGCCTTTACTTTGAAAGCTTTGATTTGGGCGTACATGGAAACGAA
TTCGGGCGTACCTGGTAACGAATTTGGTGTACCTTGGCGTTCAAGGTTCT
ATATATGAATTATGAATTTGAATGAATTGGTGGAATTGATTactgtttga
aaacaaaacagcaTAGACTTTATGCATCTTGATTGATGAGTATTCATAAA
CGTTTTTATACCTCCTTTATCTGAGATACAAGGGGGTATTTGATTGGTCG
ATTGAaccattttcattttctgtAAATACTACATATTTGTATAGaataat
tcatttttatatctaattttttattatttttaatgaattcCTTCCACAAT
CCTttatttagcattttttaaggaccTTTGTTTTGCCATTCATGTTTGAG
CAAGTTCTACCATTTTTTTCAAGTCTAAGCTTATATTCCAAAAAATTCAG
CAAGGTCCCATACATACTTTCGTGAGTATAAAATTTCGCAGAACGATTTA
CTGGTCTTTTTCATGGAGAGGTTCTCGGGaccttatatttttatataatt
ttgtttaaaaaaaaacgtgtgccGTGGAAAAACCCTCAGATAGTTTCAAA
GCCtattttgctttcgattatacAGCGTATTTAGAAAAAGGTCGAATAAA
AAACATTTGTATCGTTCAAAAAAGGACGTATATTTTTATTTAAGGGATCT
TTGGACCTATTAGTATGgacctttttttttattttcccggACGCAAATAC
TTTGGCACATACACTACAACAATACATAAGTAAAGGATATGTTTTATTAA
GAATTTGAAGTTATaccttcttttttataaaaataattatgtacgaaatt
tttattctaaataTCGTGTGTATCTTATTATAGTATGAAGACATTTGGTT
AATGTGTAGAAAattaaagttcgattttgaacaTTCGCCGAGGACAGTTG
CAATACTGCCCtaataaagtttaaaaatgggactaaattttgcattttag
acgaaaataaaaaaaagtagtgtttccggaaacctgtaggaaacactact
tttttttattttcgtctaaaatgcaaaatttagtcccatttttaaacttt
attaGGGCAGTATTGCAACTGTCCTCGGCGAAtgttcaaaatcgaacttt
aatTTTCTACACATTAACCAAATGTCTTCATACTATAATAAGATACACAC
GAtatttagaataaaaatttcgtacataattatttttataaaaaagaagg
tATAACTTCAAATTCTTAATAAAACATATCCTTTACTTATGTATTGTTGT
AGTGTATGTGCCAAAGTATTTGCGTccgggaaaataaaaaaaaaggtcCA
TACTAATAGGTCCAAAGATCCCTTAAATAAAAATATACGTCCTTTTTTGA
ACGATACAAATGTTTTTTATTCGACCTTTTTCTAAATACGCTgtataatc
gaaagcaaaaagaaaagaaaaattttctgacccggccgtagactatgggt
tcatctatatggttcatcataaagaaaattaagTTGACCGTTCttaagct
atcaaacgtcgtttagTTAGATATTcacgcttgtaaatcaagttttgttc
gtgTTAGTAGTtgtgatacattagtattcagggcggcttactt Run BLAST on NCBI protein sequence of TCONS_00024611-protein >TCONS_00024611-protein ID=TCONS_00024611-protein|Name=TCONS_00024611-protein|organism=Clytia hemisphaerica|type=polypeptide|length=352bp
MMSDGSWTNYMKNKASPLYKRQRSSNGNIVLPITGFQGNAITKDAILDDN
GSTMSPSNIDSVLATEDSNSQVSSQFGTMQLYYYKNMMAAQTPDEKQRTR
QEYLDYMSANELKLPIQLPVVMGPGGAKEPMMAQNGLILPKVGSLKERKI
SVHDQFENIDEESEDGLESKGMGLTKLDRMYGNSGYTSSVASGGSLKSTQ
VPVEISNASYIEKVGVWLNDSKDGSSQQHGHKYKPLTTDSILSGRTISQK
SGFTNVTGSEHSQASSFNRVVLPRTSSKNKKYSLQSADGANSFHSHSFYS
NATSTTDLLPPAPPSIASSSNGTIPRFMNDPMINIRPGGGSFNSAASYQP
LL Run BLAST on NCBI transcript from alignment at sc0000504:87686..91728 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024611 ID=TCONS_00024611|Name=TCONS_00024611|organism=Clytia hemisphaerica|type=transcript|length=4043bp|location=Sequence derived from alignment at sc0000504:87686..91728 (Clytia hemisphaerica)
aagtaagccgccctgaatactaatgtatcacaACTACTAAcacgaacaaa
acttgatttacaagcgtgAATATCTAActaaacgacgtttgatagcttaa
GAACGGTCAActtaattttctttatgatgaaccatatagatgaacccata
gtctacggccgggtcagaaaatttttcttttctttttgctttcgattata
cAGCGTATTTAGAAAAAGGTCGAATAAAAAACATTTGTATCGTTCAAAAA
AGGACGTATATTTTTATTTAAGGGATCTTTGGACCTATTAGTATGgacct
ttttttttattttcccggACGCAAATACTTTGGCACATACACTACAACAA
TACATAAGTAAAGGATATGTTTTATTAAGAATTTGAAGTTATaccttctt
ttttataaaaataattatgtacgaaatttttattctaaataTCGTGTGTA
TCTTATTATAGTATGAAGACATTTGGTTAATGTGTAGAAAattaaagttc
gattttgaacaTTCGCCGAGGACAGTTGCAATACTGCCCtaataaagttt
aaaaatgggactaaattttgcattttagacgaaaataaaaaaaagtagtg
tttcctacaggtttccggaaacactacttttttttattttcgtctaaaat
gcaaaatttagtcccatttttaaactttattaGGGCAGTATTGCAACTGT
CCTCGGCGAAtgttcaaaatcgaactttaatTTTCTACACATTAACCAAA
TGTCTTCATACTATAATAAGATACACACGAtatttagaataaaaatttcg
tacataattatttttataaaaaagaaggtATAACTTCAAATTCTTAATAA
AACATATCCTTTACTTATGTATTGTTGTAGTGTATGTGCCAAAGTATTTG
CGTccgggaaaataaaaaaaaaggtcCATACTAATAGGTCCAAAGATCCC
TTAAATAAAAATATACGTCCTTTTTTGAACGATACAAATGTTTTTTATTC
GACCTTTTTCTAAATACGCTgtataatcgaaagcaaaataGGCTTTGAAA
CTATCTGAGGGTTTTTCCACggcacacgtttttttttaaacaaaattata
taaaaatataaggtCCCGAGAACCTCTCCATGAAAAAGACCAGTAAATCG
TTCTGCGAAATTTTATACTCACGAAAGTATGTATGGGACCTTGCTGAATT
TTTTGGAATATAAGCTTAGACTTGAAAAAAATGGTAGAACTTGCTCAAAC
ATGAATGGCAAAACAAAggtccttaaaaaatgctaaataaAGGATTGTGG
AAGgaattcattaaaaataataaaaaattagatataaaaatgaattattC
TATACAAATATGTAGTATTTacagaaaatgaaaatggtTCAATCGACCAA
TCAAATACCCCCTTGTATCTCAGATAAAGGAGGTATAAAAACGTTTATGA
ATACTCATCAATCAAGATGCATAAAGTCTAtgctgttttgttttcaaaca
gtAATCAATTCCACCAATTCATTCAAATTCATAATTCATATATAGAACCT
TGAACGCCAAGGTACACCAAATTCGTTACCAGGTACGCCCGAATTCGTTT
CCATGTACGCCCAAATCAAAGCTTTCAAAGTAAAGGCTGATAAGAAGCCG
CGGAGTTGAAGGATCCACCGCCCGGGCGTATATTGATCATCGGATCGTTC
ATAAAACGGGGTATAGTACCGTTCGAAGAAGAAGCTATCGAGGGCGGAGC
GGGCGGTAATAAATCAGTCGTTGACGTAGCATTCGAGTAAAATGAGTGCG
AATGAAAAGAATTGGCACCGTCTGCACTCTGTAATGAATATTTCTTATTC
TTAGATGATGTCCTAGGTAGCACGACACGATTAAAACTACTTGCCTGTGA
ATGTTCACTACCTGTCACATTGGTAAAACCACTTTTTTGAGATATTGTCC
GTCCGGATAAAATACTGTCCGTAGTTAAGGGTTTATATTTGTGCCCATGT
TGTTGCGAAGAACCGTCTTTGCTATCATTCAGCCAAACACCTACTTTCTC
GATATAACTGGCGTTTGAAATCTCAACTGGCACTTGCGTTGATTTCAAAC
TACCACCGGATGCTACCGAACTTGTGTAGCCGGAATTCCCGTACATCCGG
TCTAATTTAGTTAGCCCCATTCCTTTAGACTCCAGCCCATCCTCTGATTC
CTCGTCAATGTTCTCAAACTGGTCATGGACTGAAATCTTACGTTCCTTGA
GTGATCCaacttttggtaaaatcaaACCGTTCTGAGCCATCATCGGCTCT
TTAGCGCCTCCCGGACCCATTACAACAGGTAATTGTATAGGGAGCTTAAG
CTCATTTGCTGACATATAATCTAAATATTCTTGTCTTGTTCTTTGCTTCT
CATCCGGAGTTTGGGCAGCCATCATGTTTTTATAATAATACAATTGCATG
GTACCAAACTGACTACTAACTTGAGAATTCGAATCCTCCGTTGCTAGGAC
GGAATCAATGTTACTAGGTGACATAGTGCTACCATTATCATCCAAAATGG
CATCCTTAGTAATAGCGTTACCCTGGAAACCAGTGATCGGTAAAACAATA
TTACCGTTAGACGATCGTTGACGTTTATATAAAGGCGACGctttattttt
catataattAGTCCAAGAACCATCACTCATCATCGAACTTTCATCTTCGA
AAGATTCCAAACCGTGTTTAGTTTTCAGTCGACTAACCGAATTTATATTA
GAGTGGAGCCGTAGACGAGTGTTTTGTcgtttttgtgtttgtttgGATTC
AGCATTACGCTTGTGGAGAGGCGGTTGTGATCTAACCCATTTGTTAGTAG
ACGCCGTGACAGCATCTAAGCGCTTCAAAGGATCAGCAACTAACAGTTGA
GATATAAAGTCTTTGGCATCACTCGATATGGTATTCCAAATCTAAAAACA
AggcaaatgaaaagaaatattatacgAGGACTAGTGCCAAGTCTTCTTAA
ATTTATGACAATGTGAGATTCAAAATACGCCTCTATTCTAAAAAACAACG
GCTGCTAAAACATGTTCTCTATTAGAGGCGCGTGACAGGAGATCTTGGCT
AACTATGCAAGAAAATTGGCAATTAGTGGTTATTAGTATAATGAACACTG
ATGATAATTTATCTATTGAGCTgatcttttattgttgttggCAGGTATAT
AAGTAAAATcttagtccgtataaaaaactcgGGTCTGAAAGCCAATTGTT
TATAACTTTTTACTTTgccttttctttataaaagaaCAATGGTTAACAAA
TCGacttgctcagtttttgatcacgttaccaaaacttttcttgggattgg
tctatttaaATTACATGAtcaaaaatcgaacaaaatacatctttaaagaa
agatgttaacaatagaaagaaactaAAGGCTTCCAGAGCAAGGGTTTTTA
TCTGAGCTATggtaaaaaatatcaacttgAATCAACGTTAGCAGAAATTT
attgtttgatatttttgagaaCAGTGAAGTAAAAAAGTAAGGACATTGCA
tataatttctaattttgagaaattctgcTTGGTCAGCATAAAAGGTTCGC
CTTCTTTATCATAAACAAAATTCTTTAAGCAATGAACTTGCTTTAAAGga
tataaaaactttaaaaaactgatCTCAAAGATGCCCACAGAATCAATAGT
TTCCTTTTTAGGAGGAGTCACGTTTgtctatataaaaaaaatacgaATCA
CTTCAAAGCTTAATTTAATAAATACATTAGACATCAGTATACACACTTTT
ACTTTAAATATCTGATTATCTAATGTATACGATAAAAGAGGCTCAATATA
GATTCTTTTCAAACACACCCTTTCCCATAAATAGATATAAATGATACCGA
GCTGTCTGTCGTCAATGGATTATTAAGATCGATAAGCCGAAATCAATTAC
CTTTAATCTGATGAAGCCTGCGAGAGATTATTACCCCTATTTTAGCATTA
GTTTGTGAAAAAGTTAGTAGCTTAAAAATATAAGATCTAAAGA Coding sequence (CDS) from alignment at sc0000504:87686..91728 >TCONS_00024611 ID=TCONS_00024611|Name=TCONS_00024611|organism=Clytia hemisphaerica|type=CDS|length=1059bp|location=Sequence derived from alignment at sc0000504:87686..91728 (Clytia hemisphaerica)
TCAAAGTAAAGGCTGATAAGAAGCCGCGGAGTTGAAGGATCCACCGCCCG
GGCGTATATTGATCATCGGATCGTTCATAAAACGGGGTATAGTACCGTTC
GAAGAAGAAGCTATCGAGGGCGGAGCGGGCGGTAATAAATCAGTCGTTGA
CGTAGCATTCGAGTAAAATGAGTGCGAATGAAAAGAATTGGCACCGTCTG
CACTCTGTAATGAATATTTCTTATTCTTAGATGATGTCCTAGGTAGCACG
ACACGATTAAAACTACTTGCCTGTGAATGTTCACTACCTGTCACATTGGT
AAAACCACTTTTTTGAGATATTGTCCGTCCGGATAAAATACTGTCCGTAG
TTAAGGGTTTATATTTGTGCCCATGTTGTTGCGAAGAACCGTCTTTGCTA
TCATTCAGCCAAACACCTACTTTCTCGATATAACTGGCGTTTGAAATCTC
AACTGGCACTTGCGTTGATTTCAAACTACCACCGGATGCTACCGAACTTG
TGTAGCCGGAATTCCCGTACATCCGGTCTAATTTAGTTAGCCCCATTCCT
TTAGACTCCAGCCCATCCTCTGATTCCTCGTCAATGTTCTCAAACTGGTC
ATGGACTGAAATCTTACGTTCCTTGAGTGATCCaacttttggtaaaatca
aACCGTTCTGAGCCATCATCGGCTCTTTAGCGCCTCCCGGACCCATTACA
ACAGGTAATTGTATAGGGAGCTTAAGCTCATTTGCTGACATATAATCTAA
ATATTCTTGTCTTGTTCTTTGCTTCTCATCCGGAGTTTGGGCAGCCATCA
TGTTTTTATAATAATACAATTGCATGGTACCAAACTGACTACTAACTTGA
GAATTCGAATCCTCCGTTGCTAGGACGGAATCAATGTTACTAGGTGACAT
AGTGCTACCATTATCATCCAAAATGGCATCCTTAGTAATAGCGTTACCCT
GGAAACCAGTGATCGGTAAAACAATATTACCGTTAGACGATCGTTGACGT
TTATATAAAGGCGACGctttatttttcatataattAGTCCAAGAACCATC
ACTCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024611-exon-sc0000504-1491911889:87686..91728 | TCONS_00024611-exon-sc0000504-1491911889:87686..91728 | Clytia hemisphaerica | exon |
| TCONS_00024611-exon-sc0000504-1510915933:87686..91728 | TCONS_00024611-exon-sc0000504-1510915933:87686..91728 | Clytia hemisphaerica | exon |
| TCONS_00024611-exon-sc0000504-1575043694:87686..91728 | TCONS_00024611-exon-sc0000504-1575043694:87686..91728 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000504 | supercontig | sc0000504:87686..91728 . |
Blast
The following BLAST results are available for this feature:
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