TCONS_00024614 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024614
Unique NameTCONS_00024614
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024614 ID=TCONS_00024614|Name=TCONS_00024614|organism=Clytia hemisphaerica|type=transcript|length=633bp
AATTGATAAAAATGGCAAACGAAAGCAGATCAAGGCAAGTCAGTTTCGAC
GTTGGAAGTATGAATGATGAcgttatcaaaatttttttataggCATCCCA
TCTTAttgtgaaatttctaaattttattaaaaaaggaaatcaGTACGTAG
AaaataaatgtcaaaaagttttaCTGTATTCGTCTTTCTtatattcaaaa
tttctcggtAATGCTAGGAATCGGAAACATGTTATAATATAACTCATATA
TTACAATTATATTATCTAAAAATATTATACTATAACGAAATTTCTTATAA
TCCAGACATGGCACATATGCACATATAATGACATCATTGGTAACAACGGC
ACAACTTTGTTGTGTTTGTGTTACTGAACCATGTGTGCCAAAACAGTGAG
ATTCGATACGTGATGTTCATATCAAAAGTTTCTGTTAATATGAGAACAGG
GGATTTTTCAACAGATTGTCCAGAGTATAAAATAGAGAATGTTAACATAC
AACTTTAAGAACTTTCGAATTCCTTTCTCTTTTTCCAGCCTGTAACTAGT
TTATTCTCAcaacatttttataattttttttcattggccgtTATACTGTA
catatttttacaagaaaaccCCATAAGTCTGAA
Run BLAST on NCBI

transcript from alignment at sc0000504:189828..190460

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024614 ID=TCONS_00024614|Name=TCONS_00024614|organism=Clytia hemisphaerica|type=transcript|length=633bp|location=Sequence derived from alignment at sc0000504:189828..190460 (Clytia hemisphaerica)
TTCAGACTTATGGggttttcttgtaaaaatatgTACAGTATAacggccaa
tgaaaaaaaattataaaaatgttgTGAGAATAAACTAGTTACAGGCTGGA
AAAAGAGAAAGGAATTCGAAAGTTCTTAAAGTTGTATGTTAACATTCTCT
ATTTTATACTCTGGACAATCTGTTGAAAAATCCCCTGTTCTCATATTAAC
AGAAACTTTTGATATGAACATCACGTATCGAATCTCACTGTTTTGGCACA
CATGGTTCAGTAACACAAACACAACAAAGTTGTGCCGTTGTTACCAATGA
TGTCATTATATGTGCATATGTGCCATGTCTGGATTATAAGAAATTTCGTT
ATAGTATAATATTTTTAGATAATATAATTGTAATATATGAGTTATATTAT
AACATGTTTCCGATTCCTAGCATTaccgagaaattttgaatataAGAAAG
ACGAATACAGtaaaactttttgacatttatttTCTACGTACtgatttcct
tttttaataaaatttagaaatttcacaaTAAGATGGGATGcctataaaaa
aattttgataacgTCATCATTCATACTTCCAACGTCGAAACTGACTTGCC
TTGATCTGCTTTCGTTTGCCATTTTTATCAATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013825XLOC_013825Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024614-exon-sc0000504-1491911889:189828..190460TCONS_00024614-exon-sc0000504-1491911889:189828..190460Clytia hemisphaericaexon
TCONS_00024614-exon-sc0000504-1510915933:189828..190460TCONS_00024614-exon-sc0000504-1510915933:189828..190460Clytia hemisphaericaexon
TCONS_00024614-exon-sc0000504-1575043694:189828..190460TCONS_00024614-exon-sc0000504-1575043694:189828..190460Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000504supercontigsc0000504:189828..190460 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0836739	0.0815953	0.28422	0.370753	0.112839	0	0.430304	0.604268	0.634594	0.436693	0	0.668716	0	0.577919	0.190051	0.0509885	0.690951	1.03011	0.0889472	0.279231	1.05171	2.01249	0.479694	0.0872224	0.179674	0.881951	0.114734	0.36734	0.835844	0.851593
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024614 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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