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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024622 ID=TCONS_00024622|Name=TCONS_00024622|organism=Clytia hemisphaerica|type=transcript|length=3414bpRun BLAST on NCBI protein sequence of TCONS_00024622-protein >TCONS_00024622-protein ID=TCONS_00024622-protein|Name=TCONS_00024622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp SQMNKNLKVEILKTFRELFDGRFIEHRSTFLSDVDQLAAIQLALLLLQKKRun BLAST on NCBI transcript from alignment at sc0000506:44806..60287+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024622 ID=TCONS_00024622|Name=TCONS_00024622|organism=Clytia hemisphaerica|type=transcript|length=15482bp|location=Sequence derived from alignment at sc0000506:44806..60287+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000506:44806..60287+ >TCONS_00024622 ID=TCONS_00024622|Name=TCONS_00024622|organism=Clytia hemisphaerica|type=CDS|length=17226bp|location=Sequence derived from alignment at sc0000506:44806..60287+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00024622 vs. Swiss-Prot (Human)
Match: KLF11 (Krueppel-like factor 11 OS=Homo sapiens GN=KLF11 PE=1 SV=2) HSP 1 Score: 161.77 bits (408), Expect = 1.633e-41 Identity = 76/161 (47.20%), Postives = 94/161 (58.39%), Query Frame = -1
Query: 2332 TRERIHVCPYPNCDKTYFKNSHLKTHIRSHTGKHLFIYFGIPLQTFQFSHFTYTVVTTKIMWYXXXXXXXXXSGEKPFKCVWPDCDRSFARSDELARHKRSHTGERKFECPLCSRKFMRSDHLTKHAKRHMQAKKIPGWQREINKLNEMASVTYQYPSIIS 2814
+R R +VC +P C KTYFK+SHLK H+R+HTG EKPF C W CD+ FARSDEL+RH+R+HTGE+KF CP+C R+FMRSDHLTKHA+RHM KKIPGWQ E+ KLN +AS ++S
Sbjct: 389 SRRRNYVCSFPGCRKTYFKSSHLKAHLRTHTG------------------------------------------EKPFNCSWDGCDKKFARSDELSRHRRTHTGEKKFVCPVCDRRFMRSDHLTKHARRHMTTKKIPGWQAEVGKLNRIASAESPGSPLVS 507 The following BLAST results are available for this feature:
BLAST of TCONS_00024622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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