|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024629 ID=TCONS_00024629|Name=TCONS_00024629|organism=Clytia hemisphaerica|type=transcript|length=2392bp
TAAAAAAGTAAAAGCAAAGGAGATATTTTTGTTACTATGAGACCGTAATA
TAAATAAATCAACAGGACAGCCTAAAAGATCAGCAAACAACTTGATTTTG
CATTAAATGGGGTAAAAGTGAAGTGAGCATACGGCAGTGTTAGGGAACTG
TGTAGTGTTGCAGAATTTCTTTGTGCTAAAGTTTTAACAGAAGACATGTC
TGTACCCATGAGCAAATTGCCACCAAGGTATGCAGTCTCTGATTGGGTAA
CTTCAAACAAGTTGATATCGTTGAATGCAGAACGCATTCGTGATTCATCA
CACACAATACGACAAGATGCCCGAAAGCTCAGAAACGAAACTGAAAGTCA
CACAAAATGGACCCAGCATGAAAGTAATAcaaagattgaaaaaagaattg
atgATATAAATGAGTGGAAAGTTTCTCTTGAGAGATGCTTGGAAGAAACA
GATAAAGAGATTCAAGCTTTAcagaatgaaaagaaaaaccttGAAATAGC
TCTAGAGGCTAAGAAATTACCATTAGATGTAGCAATGGAGTGCTTACTTT
CACGAGAAGAAAGGGAAGGAATTGATTTAGTTCGGGATAATGTTGAACAC
CAACTTCACAAAGAAGTTGAAGGGATTGAGGGCATTAAAGCACTTTTGCA
ACAAAAGATTGCAGAATCATTTGAACAGCTTTGCTTACTAGAAGAAGCTC
GCCATCAAATTCATTGTGATCTAACAGATAAAAACCATGCCTTAGGAATA
GATGCAGAATGTCACAGTTTGTATAATAACTCTGATGGCatagattttca
aaataacccTACAAGAACTGTTAAAGGTAGTGTTACACCAGAAACATGGA
ATTCCTTCTCTGAATACAACAAAAATAGAGGAGAAGCTGAGATCAAAGCC
TCTCAACGGTTAAGAGAAGCAATCTTTGCAACATTGGAAAAGACAAGAAA
TGATTTAGATGCACAACATCGAGCAACAAACTATGAATATCGAAAGCGAA
TCCATGAAACAGATCAGGCTAAAAATGAGCTTGAATGGCAAAAGAAAAAT
acAGAAGATGAGGTAGCTACCATGGAACAGGATATTGTTGGCTTGAAAGA
ATCCATTGAAGCAAAAATGGGCCCAATGATGGTTGCCCAGACCCGTCTTG
AGAAACGGACTCAACGTAAAAGTGTGGAATTATGTCGAGATATTCCACAA
TATCAATTATGTTATGAAGTTGCTGAAATTGATGGCTCTGTCAGAGCATT
GAGCGAGAAACACCAAGTAGCTGTGACCGCTTTGAAAAGTTTGCTTCAAG
ATCTCAACCGTATCAATGAAGATTTGAGAATCAAGACAAAATCGTTGGCT
CTTGATCAACATTGTATGGAAGTGCGTCAGAAATTGAGCGATCCTGCTGC
CAATGTGACCacagatcaaaacaaagatcaattgGATGATCAAATCAAGA
ATCTCTCCATCGCCTCAAAACAACACGAAGCTCGACCTTCAAGTTTAAGA
GATGAACGACAAACGTCTCATACTGGACGACAAACCACACTTGATCAAAG
AAACGATTCGATGCCACAGCAAAGCCAATTATCAAAATCAACCTATATCA
CTGATTTCGACGAAACTAAAAACAAAAGATCGGGGGATTTACAACGCACT
CTTGGTCAAAGAAAAATCGTCGAATTTGCGTAAGACAAGTATGAATTAAA
GGACTCTGGCCATAGTATAATGTTCATGTGCAAAAATTAGATTTCTATCC
GAATACTTGTGaataaaacgttcgatttgtctggaaaatttctttgacAA
CACAATTTCGAACGTCTTGTTCCATGATGGAAGATTAATTCACTAAATCC
TGAAAGTGCTCTATTTCTAAaaccgaaaaattgaaaatcacaatcaaatt
acacgcttttttataagaacacgaggctaaACTTCTTCCAAGCCCTAACC
AGGCTCTGATTTGGGCAATGGCTGAAAAAAAGGGCTGATTTCAAGTCGTT
TCAATAAGTCAATAAGGGAACAGGATTTTGCCGACTAGCTTTATTTTGGC
gagggaaaatttttgtgagaactaattttggcgaacttTCAAGCACAAAC
ATTATTCTAAACTTACAACCGATTTTTAATTATGGGCAGAGAACTTTTAA
CAAATATAACTCAAGTATTTTATTTCTCATAATCTCTTATATTTTGTATA
TACACCAATTAtatgatttctaatttttttaaccACTAACTGATTAAACT
TATGAAATATATTTGACTACATCGTAAATTCACATAGAACCGAAAATCGA
TTTCCAGTTTGGAATAATTGGAGCGATTAGTGTTGtcgaatatttcaata
aatcaagattttcaatgaaagtacgTCTATCCTTTGAAACCG Run BLAST on NCBI transcript from alignment at sc0000506:162810..166760+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024629 ID=TCONS_00024629|Name=TCONS_00024629|organism=Clytia hemisphaerica|type=transcript|length=3951bp|location=Sequence derived from alignment at sc0000506:162810..166760+ (Clytia hemisphaerica)
TAAAAAAGTAAAAGCAAAGGAGATATTTTTGTTACTATGAGACCGTAATA
TAAATAAATCAACAGGACAGCCTAAAAGATCAGCAAACAACTTGATTTTG
CATTAAATGGGGTAAAAGTGAAGTGAGCATACGGCAGTGTTAGGGAACTG
TGTAGTGTTGCAGAATTTCTTTGTGCTAAAGTTTTAACAGAAGACATGTC
TGTACCCATGAGCAAATTGCCACCAAGGTATGCAGTCTCTGATTGGGTAA
CTTCAAACAAGTTGATATCGTTGAATGCAGAACGCATTCGTGATTCATCA
CACACAATACGACAAGATGCCCGAAAGCTCAGAAACGAAACTGAAAGTCA
CACAAAATGGACCCAGCATGAAAGTAATAcaaagattgaaaaaagaattg
atgATATAAATGAGTGGAAAGTTTCTCTTGAGAGATGCTTGGAAGAAACA
GATAAAGAGATTCAAGCTTTAcagaatgaaaagaaaaaccttGAAATAGC
TCTAGAGGCTAAGAAATTACCATTAGATGTAGCAATGGAGTGCTTACTTT
CACGAGAAGAAAGGGAAGGAATTGATTTAGTTCGGGATAATGTTGAACAC
CAACTTCACAAAGAAGTTGAAGGGATTGAGGGCATTAAAGCACTTTTGCA
ACAAAAGATTGCAGAATCATTTGAACAGCTTTGCTTACTAGAAGAAGCTC
GCCATCAAATTCATTGTGATCTAACAGATAAAAACCATGCCTTAGGAATA
GATGCAGAATGTCACAGTTTGTATAATAACTCTGATGGCatagattttca
aaataacccTACAAGAACTGTTAAAGGTAGTGTTACACCAGAAACATGGA
ATTCCTTCTCTGAATACAACAAAAATAGAGGAGAAGCTGAGATCAAAGCC
TCTCAACGGTTAAGAGAAGCAATCTTTGCAACATTGGAAAAGACAAGAAA
TGATTTAGATGCACAACATCGAGCAACAAACTATGAATATCGAAAGCGAA
TCCATGAAACAGATCAGGCTAAAAATGAGCTTGAATGGCAAAAGAAAAAT
GTAAGAATTTTGATAttagaaaataatgaaataatgattatgttttggcc
aatttgaagaagaaattttatttgcaTACATAAATAAGgtattaaattta
aattttaatgtaacatttaagtgatttttttttacttttcagacAGAAGA
TGAGGTAGCTACCATGGAACAGGATATTGTTGGCTTGAAAGAATCCATTG
AAGCAAAAATGGGCCCAATGATGGTAAGAGTAGATTGGCATATATTCTGG
GCAATTTCTtgagtttaatttttttaatgaaaatattacCAGCAACTGAG
GTCACGCAAAAATGGTGCAAACaatcaaaaccacttttaataaaaaatat
ctATATACCAAGATATAATCATCAACTGCCTAGGGGGGTCAGTTTTTGGG
TAAATTGGTACTAAAATTAGcgattttcttaatttttagaatctttttca
aaattgtttgtgttttttttccGAATTTCTGcaatcttttagaaaaaatt
aaaatgatctagtttaaagaaaatttcccaagttcaaatatttttgcata
tacAGTCAAAAGTCTTTAATGTTTGTTTCATTAATAAATCAGCATTGTTT
AAAAGTAttagtttttgtaaaaaacgtgTCTAAATTTCCCTAAAAGTTTT
AGTACATATGTGTACTAAACTACCACTTTTCTAAAATGGGGTGGTGGTAT
TGTCGAAAACTCTTTTCATATTGTGTTtaagattttagtaccgactcCTC
CCTGCAACCGGGTCTTTCTAAATTATTTACCTAATGTTCCCTGTAACATT
TAAGGTcccatacatgtttttttatacaaGCATTGCGCTTATAAACATta
tctattttgaaatttctctaaaattttgcttagAGTGTTTATTGTTTTTA
CTCTCCTCTTTCTTTAGAGCAATCCAGACAGTACAACTCAGTCAGACAGA
GATCACGAGGTTTGTTTATTTGCAAAGTGTAGAGGGTAACTGTTTGAAAG
GATCTCAGATTATTATGTAGATTATGAAATTTTTAGTCTGTATAAGAGCA
AGTTTAGATGAAGATAATGATTGTTTTATTGGTGTTTTAGTGTGTTGGTA
TATAATCATGAATAAGAATTTAGAATTAGAGCATACCATAATCATTATAT
TAGTGTTAGTtcaatcggattaattttcgcaaaatcaaatttcgcgacat
cttaaatttttgcctttttacGCAAAGATAAATCATTGCGTATGATTGCT
GACTTGTAATCATGCATGTAGATCCGTGTTAAGTTCTACAAATCTCCATT
TCGAGAAAGCTGCCGTTTTGAGTGATATTTATTGCTGATTATTTGTGTTG
TTGATATTTATTTGAACATTTGGTATTTGTTCAttcgcaaaaattttaaa
atcccaaaaaaacttttttttggctCACGAAATTTAACCTTGCTAAAATC
GATCCGATAAAAGTAAGCTTGATACATATTCTAAAGAAAGATTTAGTTTG
ATCTACCCTCCCCATAGCTTTTTCTACACTAAATAATCGAGACTAATTTC
CTATAAACTAACATACAAAATCTATAAGTCATATTATATGCTATACCATT
TTTCGATGTTATTAATTTGAATTTGCCCTATTTTCTCAAGGTTGCCCAGA
CCCGTCTTGAGAAACGGACTCAACGTAAAAGTGTGGAATTATGTCGAGAT
ATTCCACAATATCAATTATGTTATGAAGTTGCTGAAATTGATGGCTCTGT
CAGAGCATTGAGCGAGAAACACCAAGTAGCTGTGACCGCTTTGAAAAGTT
TGCTTCAAGATCTCAACCGTATCAATGAAGATTTGAGAATCAAGACAAAA
TCGTTGGCTCTTGATCAACATTGTATGGAAGTGCGTCAGAAATTGAGCGA
TCCTGCTGCCAATGTGACCacagatcaaaacaaagatcaattgGATGATC
AAATCAAGAATCTCTCCATCGCCTCAAAACAACACGAAGCTCGACCTTCA
AGTTTAAGAGATGAACGACAAACGTCTCATACTGGACGACAAACCACACT
TGATCAAAGAAACGATTCGATGCCACAGCAAAGCCAATTATCAAAATCAA
CCTATATCACTGATTTCGACGAAACTAAAAACAAAAGATCGGGGGATTTA
CAACGCACTCTTGGTCAAAGAAAAATCGTCGAATTTGCGTAAGACAAGTA
TGAATTAAAGGACTCTGGCCATAGTATAATGTTCATGTGCAAAAATTAGA
TTTCTATCCGAATACTTGTGaataaaacgttcgatttgtctggaaaattt
ctttgacAACACAATTTCGAACGTCTTGTTCCATGATGGAAGATTAATTC
ACTAAATCCTGAAAGTGCTCTATTTCTAAaaccgaaaaattgaaaatcac
aatcaaattacacgcttttttataagaacacgaggctaaACTTCTTCCAA
GCCCTAACCAGGCTCTGATTTGGGCAATGGCTGAAAAAAAGGGCTGATTT
CAAGTCGTTTCAATAAGTCAATAAGGGAACAGGATTTTGCCGACTAGCTT
TATTTTGGCgagggaaaatttttgtgagaactaattttggcgaacttTCA
AGCACAAACATTATTCTAAACTTACAACCGATTTTTAATTATGGGCAGAG
AACTTTTAACAAATATAACTCAAGTATTTTATTTCTCATAATCTCTTATA
TTTTGTATATACACCAATTAtatgatttctaatttttttaaccACTAACT
GATTAAACTTATGAAATATATTTGACTACATCGTAAATTCACATAGAACC
GAAAATCGATTTCCAGTTTGGAATAATTGGAGCGATTAGTGTTGtcgaat
atttcaataaatcaagattttcaatgaaagtacgTCTATCCTTTGAAACC
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024629-exon-sc0000506-1491911889:162810..163859 | TCONS_00024629-exon-sc0000506-1491911889:162810..163859 | Clytia hemisphaerica | exon |
| TCONS_00024629-exon-sc0000506-1510915933:162810..163859 | TCONS_00024629-exon-sc0000506-1510915933:162810..163859 | Clytia hemisphaerica | exon |
| TCONS_00024629-exon-sc0000506-1575043694:162810..163859 | TCONS_00024629-exon-sc0000506-1575043694:162810..163859 | Clytia hemisphaerica | exon |
| TCONS_00024629-exon-sc0000506-1491911889:164002..164082 | TCONS_00024629-exon-sc0000506-1491911889:164002..164082 | Clytia hemisphaerica | exon |
| TCONS_00024629-exon-sc0000506-1510915933:164002..164082 | TCONS_00024629-exon-sc0000506-1510915933:164002..164082 | Clytia hemisphaerica | exon |
| TCONS_00024629-exon-sc0000506-1575043694:164002..164082 | TCONS_00024629-exon-sc0000506-1575043694:164002..164082 | Clytia hemisphaerica | exon |
| TCONS_00024629-exon-sc0000506-1491911889:165500..166760 | TCONS_00024629-exon-sc0000506-1491911889:165500..166760 | Clytia hemisphaerica | exon |
| TCONS_00024629-exon-sc0000506-1510915933:165500..166760 | TCONS_00024629-exon-sc0000506-1510915933:165500..166760 | Clytia hemisphaerica | exon |
| TCONS_00024629-exon-sc0000506-1575043694:165500..166760 | TCONS_00024629-exon-sc0000506-1575043694:165500..166760 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000506 | supercontig | sc0000506:162810..166760 + |
Blast
BLAST of TCONS_00024629 vs. Swiss-Prot (Human)
Match: TEKT2 (Tektin-2 OS=Homo sapiens GN=TEKT2 PE=1 SV=1) HSP 1 Score: 346.665 bits (888), Expect = 3.602e-110 Identity = 181/391 (46.29%), Postives = 261/391 (66.75%), Query Frame = 1
Query: 226 RYAVSDWVTSNKLISLNAERIRDSSHTIRQDARKLRNETESHTKWTQHESNTKIEKRIDDINEWKVSLERCLEETDKEIQALQNEKKNLEIALEAKKLPLDVAMECLLSREEREGIDLVRDNVEHQLHKEVEGIEGIKALLQQKIAESFEQLCLLEEARHQIHCDLTDKNHALGIDAECHSLYNNSDGIDFQNNPTRTVKGSVTPETWNSFSEYNKNRGEAEIKASQRLREAIFATLEKTRNDLDAQHRATNYEYRKRIHETDQAKNELEWQKKNTEDEVATMEQDIVGLKESIEAKMGPMMVAQTRLEKRTQRKSVELCRDIPQYQLCYEVAEIDGSVRALSEKHQVAVTALKSLLQDLNRINEDLRIKTKSLALDQHCMEVRQKLSDPA 1398
R+ + DW T++ L+S NA+ RD+SH IRQ+AR LRNET + T W +H++ T++ +RID +N WK L++CL + D EI AL K++ E L+AK LPLDVA+ECL RE R ID+V+D VE +LHKEVE IE K LQQK++++FEQLCLL+E + Q++ D K L ID C SL S I + +PTR GS T + W+ FS +NK+R EAE+KA+ LREA T+ +T N+L+AQ AT + +RKR+ E ++ +EL+WQ+KNT +E+A +++DI L+E + K+ + ++ TRLE RT R +VELCRD QY L EV +++ ++ AL +K A AL +L + L R+ D+ K S+ LD CM+ R+KL+ PA
Sbjct: 11 RFQLPDWHTNSYLLSTNAQLQRDASHQIRQEARVLRNETNNQTIWDEHDNRTRLVERIDTVNRWKEMLDKCLTDLDAEIDALTQMKESAEQNLQAKNLPLDVAIECLTLRESRRDIDVVKDPVEDELHKEVEVIEATKKALQQKVSQAFEQLCLLQEVQQQLNSDHRGKMETLEIDRGCLSLNLRSPNISLKVDPTRVPDGSTTLQQWDDFSRFNKDRAEAEMKAATELREATALTIAETNNELEAQRVATEFAFRKRLREMEKVYSELKWQEKNTLEEIAELQEDIRHLEEDLRTKLLSLKLSHTRLEARTYRPNVELCRDQAQYGLTDEVHQLEATIAALKQKLAQAQDALDALCKHLARLQADIACKANSMLLDTKCMDTRRKLTVPA 401
The following BLAST results are available for this feature:
|
