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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024641 ID=TCONS_00024641|Name=TCONS_00024641|organism=Clytia hemisphaerica|type=transcript|length=2728bp
CACTCCTAAAGTTTTGAACATTTCCCTCTTTTTGACGAAATCTTTTTTAT
CTAGTGAGTGTGTCCAGCCCCTGtcatctttttataaaaataaaatttat
ataaaataGTTGCCCGGGAAGAGGAATAAAAAGTGACGTCATCTTTTGTC
TCTCAACAAGATGAGATAGTATAATgcatcaaaaatcaaaacaaaaattt
aaaatatctcaaattaaATTCGGTATTTTGGAAGCTGGTAACTCAAGATG
CATGGGACCAAAAAGAACGATGTTGACATCAAAATTTCTACAGATTACCG
TTCATGGATTTGGTTCAAATATATTTACATCGGATGTGCGGACATCTGTT
TCTGGTGGACAGTATGGAACATTGCAGATCATCTATGGCCTATGGACATC
ACTACAGACGGTGCTCTATCGTATGTCCGTGGTTACATGTTGATCATAGC
TGCCAACCTCTACTACCTGCTCCAACGATTACTGTTTCGCGAGACTTGTC
ATAAGTTTTATGAAACACGTGAGAAACATTTACATCCAGCATGCATTGTA
ACAGAAGAAGAGGTCATCCGAAATAAACCGATTCGGTTTCAAGTTTTGAA
GAAGGTGTTGACGTTAATGATATGGATGGTGGTTGTGGGGTTCATTCAAG
TGTGGCGTGGATTGTTCGCCACTTTCGACTACGTTGTCGATTTGCTACAC
CTTCATTTCGATATCAACAAGATCTTGAGCTCTGTCATCTTTCAACTGAT
TGTAGGAATAACCCTGGCCTTCACACAAAGAAACAATGCAGTCAACTTGT
GTCCAACACACAAGATTTATAAGTATGACGAACTGGAGGAAATGGATGGC
TTGTTCAGTCtccatgtttttgaaaatttgttgttGAAAGACGATCAAAA
AACTAGCAACACTCGAAATAGCAAAATGGAGATTAAGGAAGCCCAAACAT
CAGTTCCTCCtcctccaccaccaccacccACGAAGAGTAGAAGGAAATTT
TCTCCTTTAAATTCTGGTTTTGATCTTCCACAATACGCAGCACGTAAGAT
TTCCGGACAACTTCATCGTTCGAGCAGCACCAACAGCCTGTATTCACAAC
GAAAAGCCTCACAGTCATCAAAGAACTCGGACATGAGCTCAGTTGCGTCA
ACCGTATATCAGGACAGTACACCACCATCTTGTAAAACGTCAACCTCTAG
TTTACAATCAACCGAGTCAACAGAAGGGCGAAAAATGTCACGTGTTGAGT
TAGACTTCAACGagaagaataaaagaaaaatcagcaCTATGTCATTCTTG
AACGCCCCCTCGTTTGAAATCATTGAAGAAGAGCAGCACGAAAACGAGGC
CGGAAACTCGTTCCCAGACCAAACGATGATCGGCATCGACAATAAGAATT
TCCTTAACACTGAAGTTGAAGATGAAATCCCGATGCACAAACTGAGTGAA
CAATCAAATACCCTTTTCATAGATCTTAAGGATATACAGGACAacaataa
agaagaaaatgcTGACGTTGCAGAAGCAGCCTGTGATATTTCATTGGACG
TGATTGGAGGCTCGTCTACTGAAGAGATGTCAACATCATCTGAAAGCTTC
ATGCAACACGTGCGACGAGCAAGTTTCCGAAGACGTGTGCACTTTGAAGA
GCTCGATGATAAAGACTCAGTGGACTCACTTGATTTGAATGCAACAACGG
GTACTGAATTTCGTTACAACCACTGCAAGAGATGGCTACGAAGCTTCATT
GGAAAACATTTTGGGAATTCTTTTGCGGATTGTTCACAGTCTGTCTTTGG
GCACCAACTTGGTATGTGTGGGATGTCATAGCAGAAGCGACAGGCTACAA
GTTGTATTTTCAAATTGGAATACATGTGTTGTCGTTCTTCAGCTTGGTGT
ACTTCAACGTCTCCATAAACCTCGCTCTTTGATCAACGTTTTCCAGTGGA
CGTTTTGAAGTCAAAACATGAAGAAAACGGAAAGGATAGATAAAAAGGAC
AAACTCGAGGGAAGTTTATGAAATATCTTTTAAACTAAATCTTCAGTAAA
TTTAAAGTAGATTTGAAGTTGTAAAGATAAAATAGAATTTGTAGTGGATT
TCTTAATTAACTAGGaagattttatttaaaagaattgtACATAATTTGAA
ACATTTAATTCTTTGGTAGATTAAATTATTtctctttattagaaaaatat
cTGACATTCTAAGGGATCACAAAAACCTCTGTGATGATTGAATTCTTCTT
AATATGGTTAGTGGCAAAAGCACCAGGAGCACTGCCTTATGAAAGTGAAT
GGTATTTTGTACTTATTTTTGGATGTATCACCGATCGTAACATGATAAGA
TTAGCAATTTATATTTTGACCAGGAAAATCAGATTAGtggttgaaaattt
cttttgattcccGACCAAGTATAAAGAATGTCATTTTGAAGGGTCGAAAA
CAATGTCAAAAGTGACGCGTGTCAAGATCGACTGTCATTTCTCTATatgg
caaaaatatttgaatggacacatttttcaaaatttcaagactttttaTCA
TGTCcgaaaatcatttaaaaagaacCAGGAAAAATATactttcattcaat
tttttgatatgAAACTTACAACTAGGTTTAAGGACGTAATGCATCAAAAA
AATTGTATCAAAACTTATCGAAAAAGAACTCTGAAATAAATAAAGATCAG
ACCGAGAAGTTATGTAAGAGTCTTTCTT Run BLAST on NCBI transcript from alignment at sc0000506:179796..184685+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024641 ID=TCONS_00024641|Name=TCONS_00024641|organism=Clytia hemisphaerica|type=transcript|length=4890bp|location=Sequence derived from alignment at sc0000506:179796..184685+ (Clytia hemisphaerica)
CACTCCTAAAGTTTTGAACATTTCCCTCTTTTTGACGAAATCTTTTTTAT
CTAGTGAGTGTGTCCAGCCCCTGtcatctttttataaaaataaaatttat
ataaaataGTTGCCCGGGAAGAGGAATAAAAAGTGACGTCATCTTTTGTC
TCTCAACAAGATGAGATAGTATAATgcatcaaaaatcaaaacaaaaattt
aaaatatctcaaattaaATTCGGTATTTTGGAAGCTGGTAACTCAAGATG
CATGGGACCAAAAAGAACGATGTTGACATCAAAATTTCTACAGGTAGGAa
tgtgaatttccctttttctgaCGGTGAACATTTTTCTGATGGTGAACATT
TTTCTGATGGTGAACATATCTATGATGGAAATTGAAAAGAGGCGTCCCAT
CTGACCACCTCTcagcaaaaaatcaaatgataaaaCCGTTCGATAACTTG
ATTTCAGATAGGGGGTATACTCTCTTTACAGCGATTATACTTTGATAAAT
GACTGTGTGTAATGCTTCCATCTCACGAAATCGGCTTAGTAAATATCGAT
TCTTAAATATCTTATAATGGTGCtgacattttgatattttaagtGGAGTA
CTTTTGCACCGATCAGTGACTTTATAAGAACCggcaaaaacaaaatttgt
cagtcagtgatgttttcaatttttcgaccTTTCGATATTTGATGAACACG
GGTCacatttcaaatattgtttCAGCCCCATTTATCGGGGAGATGAGAGT
CATAGAGTGATTCGAATATCGGAAGGATAGCTTGCAGCGAGAATAAGGAA
GTGTTTTGAGGCATTCATCTAATGCATGGTGCCTTTAATGAGATACTTAA
TGAAAATTAAAGTATTTATACATTCAATTAATTAATACTACCGTAATGGA
ATCACAGGAAATAAATGATAATTGGTTGGATGTCTAATATCTTACTACCG
GACTTCAACTTCTAGTTGTACCGTTGTTTTTATGAGGTATACTGAATGAG
AATACAAATTCTAAACTATCACACATGCGTGTTTAATGGGGTGTTTAGTT
ACAAGATGGTTCCCCGGTAATCACTTAATTATCATCGGTCCGACGAAAAC
GCTCAAAGGGGTTTATTTCTCTTTAAACTAACATCTTTCTTTCACCCTCA
TGTCATAAGACCATCAAATGacgttcaattttcattcagatGTCAAAAAT
AGGGTCTGATAGTCTTTCAAATGAGAGGTTCATTCATACTTTGAAATGTT
AATGTACCTCAAAACATGAGTTTGACGAAAGAACGCAAGAAAAAAGGCTG
TTTTCATGCCAAGAAGTCATCAAGAAAAGGCGGGGATGCTTTTTGGAGAG
ATTTtctcagatttaaaaagattaagATGAAAATCGTCTTTAGCCTCAGT
AGGAAGACTGCCCATCTAGCCTTCTTTATAAAGCCGTTACACAGTTTCTG
CTTAATGACATCTCCACAtcaattttatggattttaatTAATCAGGAGAG
ATACTGTAGGATGCGTTCTTGAGACATGCCACTAGACCATGGTAATTTCG
AAGATAAAAATGGGTGGGTTCTCTGTCAATTTACATCTAATTAAGTACAA
GAATATTAGCTAATTCAACACCCTTTTCTCCCTGAATAAAAGATATGTAG
CCAAAGCGTAAGGAAACCTATCGAAGAAGTAAATTGTGCTAGCAAACATT
GGCTAGGTCCTCAGTCAAAAATTGCaccccatttgatttgatttcataCT
TTTCGACTTAACAATGTGGTTTAATAATGAAGAGAGTTTGATCGAGTGTA
AAAATTCCTGTATCCATATGAATTCAATAATAAGTTTTTGTCAACCTTTT
TCAGATTACCGTTCATGGATTTGGTTCAAATATATTTACATCGGATGTGC
GGACATCTGTTTCTGGTGGACAGTATGGAACATTGCAGATCATCTATGGC
CTATGGACATCACTACAGACGGTGCTCTATCGTATGTCCGTGGTTACATG
TTGATCATAGCTGCCAACCTCTACTACCTGCTCCAACGATTACTGTTTCG
CGAGACTTGTCATAAGTTTTATGAAACACGTGAGAAACATTTACATCCAG
CATGCATTGTAACAGAAGAAGAGGTCATCCGAAATAAACCGATTCGGTTT
CAAGTTTTGAAGAAGGTGTTGACGTTAATGATATGGATGGTGGTTGTGGG
GTTCATTCAAGTGTGGCGTGGATTGTTCGCCACTTTCGACTACGTTGTCG
ATTTGCTACACCTTCATTTCGATATCAACAAGATCTTGAGCTCTGTCATC
TTTCAACTGATTGTAGGAATAACCCTGGCCTTCACACAAAGAAACAATGC
AGTCAACTTGTGTCCAACACACAAGATTTATAAGTATGACGAACTGGAGG
AAATGGATGGCTTGTTCAGTCtccatgtttttgaaaatttgttgttGAAA
GACGATCAAAAAACTAGCAACACTCGAAATAGCAAAATGGAGATTAAGGA
AGCCCAAACATCAGTTCCTCCtcctccaccaccaccacccACGAAGAGTA
GAAGGAAATTTTCTCCTTTAAATTCTGGTTTTGATCTTCCACAATACGCA
GCACGTAAGATTTCCGGACAACTTCATCGTTCGAGCAGCACCAACAGCCT
GTATTCACAACGAAAAGCCTCACAGTCATCAAAGAACTCGGACATGAGCT
CAGTTGCGTCAACCGTATATCAGGACAGTACACCACCATCTTGTAAAACG
TCAACCTCTAGTTTACAATCAACCGAGTCAACAGAAGGGCGAAAAATGTC
ACGTGTTGAGTTAGACTTCAACGagaagaataaaagaaaaatcagcaCTA
TGTCATTCTTGAACGCCCCCTCGTTTGAAATCATTGAAGAAGAGCAGCAC
GAAAACGAGGCCGGAAACTCGTTCCCAGACCAAACGATGATCGGCATCGA
CAATAAGAATTTCCTTAACACTGAAGTTGAAGATGAAATCCCGATGCACA
AACTGAGTGAACAATCAAATACCCTTTTCATAGATCTTAAGGATATACAG
GACAacaataaagaagaaaatgcTGACGTTGCAGAAGCAGCCTGTGATAT
TTCATTGGACGTGATTGGAGGCTCGTCTACTGAAGAGATGTCAACATCAT
CTGAAAGCTTCATGCAACACGTGCGACGAGCAAGTTTCCGAAGACGTGTG
CACTTTGAAGAGCTCGATGATAAAGACTCAGTGGACTCACTTGATTTGAA
TGCAACAACGGGTACTGAATTTCGTTACAACCACTGCAAGGTATGCTTGT
TCATCAGTATTTTGACGTACATATACACTATCCACCATCGACAAGTATTC
CTTCATATCTTCGGTGGAATGTTCTGGAGTACAACATGGAAATTGTTCGA
TTTCGCAACAGAATCCATTTTCactaaaaccgcaagtgataTTCCAGGAC
TCGTTTTGATTGctattttttgtcattctatgaACCATTTGGTTTTGTTT
CGATTCAAAGAGATGGCTACGAAGCTTCATTGGAAAACATTTTGGGAATT
CTTTTGCGGATTGTTCACAGTCTGTCTTTGGGCACCAACTTGGTATGTGT
GGGATGTCATAGCAGAAGCGACAGGTTATTAACTTATTTGACTATCGTCT
AAACAATTCTTCAAATAAGGAACCTCAATCAAGGGAAGGGAAAATGGCAA
TCCAATAAGAATTGATGAACTAAGCGCTAACAGTAGAGAGGTTATTTCAT
AGTTGTTTTATTTTCCTTGTTCCCTGACAAGAGAAAGTTGTCAGaccata
aaattaaaaaaacgcgTGCAAATCTTCTGTCTCGGTATTTTGTCTGTCAT
CTCCTCAAGTCCAATGGTGAAAgataaaaatctcaaattttgtttctggt
AAGGGTGAGGATAGAAATATTCTGTGCCCTTTTGATATCGagtcaaatta
aaagaaaacagAACAATATATTCTTACCGTTACACttccttcttttcttt
tgtagGCTACAAGTTGTATTTTCAAATTGGAATACATGTGTTGTCGTTCT
TCAGCTTGGTGTACTTCAACGTCTCCATAAACCTCGCTCTTTGATCAACG
TTTTCCAGTGGACGTTTTGAAGTCAAAACATGAAGAAAACGGAAAGGATA
GATAAAAAGGACAAACTCGAGGGAAGTTTATGAAATATCTTTTAAACTAA
ATCTTCAGTAAATTTAAAGTAGATTTGAAGTTGTAAAGATAAAATAGAAT
TTGTAGTGGATTTCTTAATTAACTAGGaagattttatttaaaagaattgt
ACATAATTTGAAACATTTAATTCTTTGGTAGATTAAATTATTtctcttta
ttagaaaaatatcTGACATTCTAAGGGATCACAAAAACCTCTGTGATGAT
TGAATTCTTCTTAATATGGTTAGTGGCAAAAGCACCAGGAGCACTGCCTT
ATGAAAGTGAATGGTATTTTGTACTTATTTTTGGATGTATCACCGATCGT
AACATGATAAGATTAGCAATTTATATTTTGACCAGGAAAATCAGATTAGt
ggttgaaaatttcttttgattcccGACCAAGTATAAAGAATGTCATTTTG
AAGGGTCGAAAACAATGTCAAAAGTGACGCGTGTCAAGATCGACTGTCAT
TTCTCTATatggcaaaaatatttgaatggacacatttttcaaaatttcaa
gactttttaTCATGTCcgaaaatcatttaaaaagaacCAGGAAAAATATa
ctttcattcaattttttgatatgAAACTTACAACTAGGTTTAAGGACGTA
ATGCATCAAAAAAATTGTATCAAAACTTATCGAAAAAGAACTCTGAAATA
AATAAAGATCAGACCGAGAAGTTATGTAAGAGTCTTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024641-exon-sc0000506-1491911889:179796..180088 | TCONS_00024641-exon-sc0000506-1491911889:179796..180088 | Clytia hemisphaerica | exon |
| TCONS_00024641-exon-sc0000506-1510915933:179796..180088 | TCONS_00024641-exon-sc0000506-1510915933:179796..180088 | Clytia hemisphaerica | exon |
| TCONS_00024641-exon-sc0000506-1575043694:179796..180088 | TCONS_00024641-exon-sc0000506-1575043694:179796..180088 | Clytia hemisphaerica | exon |
| TCONS_00024641-exon-sc0000506-1491911889:181650..183085 | TCONS_00024641-exon-sc0000506-1491911889:181650..183085 | Clytia hemisphaerica | exon |
| TCONS_00024641-exon-sc0000506-1510915933:181650..183085 | TCONS_00024641-exon-sc0000506-1510915933:181650..183085 | Clytia hemisphaerica | exon |
| TCONS_00024641-exon-sc0000506-1575043694:181650..183085 | TCONS_00024641-exon-sc0000506-1575043694:181650..183085 | Clytia hemisphaerica | exon |
| TCONS_00024641-exon-sc0000506-1491911889:183306..183419 | TCONS_00024641-exon-sc0000506-1491911889:183306..183419 | Clytia hemisphaerica | exon |
| TCONS_00024641-exon-sc0000506-1510915933:183306..183419 | TCONS_00024641-exon-sc0000506-1510915933:183306..183419 | Clytia hemisphaerica | exon |
| TCONS_00024641-exon-sc0000506-1575043694:183306..183419 | TCONS_00024641-exon-sc0000506-1575043694:183306..183419 | Clytia hemisphaerica | exon |
| TCONS_00024641-exon-sc0000506-1491911889:183801..184685 | TCONS_00024641-exon-sc0000506-1491911889:183801..184685 | Clytia hemisphaerica | exon |
| TCONS_00024641-exon-sc0000506-1510915933:183801..184685 | TCONS_00024641-exon-sc0000506-1510915933:183801..184685 | Clytia hemisphaerica | exon |
| TCONS_00024641-exon-sc0000506-1575043694:183801..184685 | TCONS_00024641-exon-sc0000506-1575043694:183801..184685 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000506 | supercontig | sc0000506:179796..184685 + |
Blast
The following BLAST results are available for this feature:
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