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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024646 ID=TCONS_00024646|Name=TCONS_00024646|organism=Clytia hemisphaerica|type=transcript|length=966bp
GAAAAAGATAGCAAGATAATTTCGAGAAGATGCTTTTCACCAATGGATGC
ATCCTCCTTATCAGTCTGGGCTGCCTTCTCACCTTAACGAAAGCAAATGA
CAACGTTCGACAAAAGCGTACCGTGGATCTCACCGAAGCCATGCTAAGCG
CCTCAATCAGGTCAGGGACCTCGTTATCTGGTACAACAGTGGGAGATTTG
AAGCAATCCAGTTACCGAGTGGCTGTCTCTGGATCAGTCGAGAACTACTC
GAAATGGGCGTTATTATTCAAAGGATGTGAAATAGCAGCGGGTCAGATGA
ATCTCCCGTTAAGAAGTGTAGCTGCTGGTCAACGCGAAGGATTTGCCAGC
CATAAAACAGCACACGCAGCAAAAGGAAGTTTCGTCAAATGTATGTTACT
AGTTGGTGACAAGTTGGTTCATTTCATGTATTCAGCACCATATTCGTTTG
ATTTTCATGCCAACTATCTAGCCGTTGGAATTTGCAACAAAGACATGCAA
AGTGACACCCATGGATACCCATGCAGAGACCTGACCGCCAAAATAATGTA
TTACTATACTCCTTCATTCGTCTCCATTCGTCAGTTTTACAGAAATATTC
ACACTGTCAAATACTGTGACGAAGATTTGTGTATTTCTGGCGTCATGGGA
ACAAGCCATCAACCAGAGATCAATCTCAAAGTCATGCCTCAAAAGTACGA
AGATCTTTACAATGAAGTAAAAGACGATTCCGTGAAAGACCACTGGGGAA
AAGATGAATACGAAAAGTTTGTTAATAGTTagtttcattttttagctttt
agccacaatttctttcaattttactCCGAAAGAAAAGTATAATAGCTAAA
TAACTCGAATGTCTACTCAACTCGTACGGGCTTGGTTTATTTAGAGAATA
CTAAGCAACTacgcgttttttttaagaaactagttttaccaagcagtctc
aatgtttcttaagaaa Run BLAST on NCBI protein sequence of TCONS_00024646-protein >TCONS_00024646-protein ID=TCONS_00024646-protein|Name=TCONS_00024646-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MLFTNGCILLISLGCLLTLTKANDNVRQKRTVDLTEAMLSASIRSGTSLS
GTTVGDLKQSSYRVAVSGSVENYSKWALLFKGCEIAAGQMNLPLRSVAAG
QREGFASHKTAHAAKGSFVKCMLLVGDKLVHFMYSAPYSFDFHANYLAVG
ICNKDMQSDTHGYPCRDLTAKIMYYYTPSFVSIRQFYRNIHTVKYCDEDL
CISGVMGTSHQPEINLKVMPQKYEDLYNEVKDDSVKDHWGKDEYEKFVNS Run BLAST on NCBI transcript from alignment at sc0000506:47919..48990- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024646 ID=TCONS_00024646|Name=TCONS_00024646|organism=Clytia hemisphaerica|type=transcript|length=1072bp|location=Sequence derived from alignment at sc0000506:47919..48990- (Clytia hemisphaerica)
GAAAAAGATAGCAAGATAATTTCGAGGTAAACGAAATTCTGTTTTTCTAT
GTATTAACTAAGTTTGAGTACTGGTCAATTTACTAAGAAGATTTAAAGGA
ATAACTTCATCTCGTTTTTGGTTTCTTTCAAGAAGATGCTTTTCACCAAT
GGATGCATCCTCCTTATCAGTCTGGGCTGCCTTCTCACCTTAACGAAAGC
AAATGACAACGTTCGACAAAAGCGTACCGTGGATCTCACCGAAGCCATGC
TAAGCGCCTCAATCAGGTCAGGGACCTCGTTATCTGGTACAACAGTGGGA
GATTTGAAGCAATCCAGTTACCGAGTGGCTGTCTCTGGATCAGTCGAGAA
CTACTCGAAATGGGCGTTATTATTCAAAGGATGTGAAATAGCAGCGGGTC
AGATGAATCTCCCGTTAAGAAGTGTAGCTGCTGGTCAACGCGAAGGATTT
GCCAGCCATAAAACAGCACACGCAGCAAAAGGAAGTTTCGTCAAATGTAT
GTTACTAGTTGGTGACAAGTTGGTTCATTTCATGTATTCAGCACCATATT
CGTTTGATTTTCATGCCAACTATCTAGCCGTTGGAATTTGCAACAAAGAC
ATGCAAAGTGACACCCATGGATACCCATGCAGAGACCTGACCGCCAAAAT
AATGTATTACTATACTCCTTCATTCGTCTCCATTCGTCAGTTTTACAGAA
ATATTCACACTGTCAAATACTGTGACGAAGATTTGTGTATTTCTGGCGTC
ATGGGAACAAGCCATCAACCAGAGATCAATCTCAAAGTCATGCCTCAAAA
GTACGAAGATCTTTACAATGAAGTAAAAGACGATTCCGTGAAAGACCACT
GGGGAAAAGATGAATACGAAAAGTTTGTTAATAGTTAGTTTCATTTTTTA
GCTTTTAGCCACAATTTCTTTCAATTTTACTCCGAAAGAAAAGTATAATA
GCTAAATAACTCGAATGTCTACTCAACTCGTACGGGCTTGGTTTATTTAG
AGAATACTAAGCAACTACGCGTTTTTTTTAAGAAACTAGTTTTACCAAGC
AGTCTCAATGTTTCTTAAGAAA Coding sequence (CDS) from alignment at sc0000506:47919..48990- >TCONS_00024646 ID=TCONS_00024646|Name=TCONS_00024646|organism=Clytia hemisphaerica|type=CDS|length=753bp|location=Sequence derived from alignment at sc0000506:47919..48990- (Clytia hemisphaerica)
ATGCTTTTCACCAATGGATGCATCCTCCTTATCAGTCTGGGCTGCCTTCT
CACCTTAACGAAAGCAAATGACAACGTTCGACAAAAGCGTACCGTGGATC
TCACCGAAGCCATGCTAAGCGCCTCAATCAGGTCAGGGACCTCGTTATCT
GGTACAACAGTGGGAGATTTGAAGCAATCCAGTTACCGAGTGGCTGTCTC
TGGATCAGTCGAGAACTACTCGAAATGGGCGTTATTATTCAAAGGATGTG
AAATAGCAGCGGGTCAGATGAATCTCCCGTTAAGAAGTGTAGCTGCTGGT
CAACGCGAAGGATTTGCCAGCCATAAAACAGCACACGCAGCAAAAGGAAG
TTTCGTCAAATGTATGTTACTAGTTGGTGACAAGTTGGTTCATTTCATGT
ATTCAGCACCATATTCGTTTGATTTTCATGCCAACTATCTAGCCGTTGGA
ATTTGCAACAAAGACATGCAAAGTGACACCCATGGATACCCATGCAGAGA
CCTGACCGCCAAAATAATGTATTACTATACTCCTTCATTCGTCTCCATTC
GTCAGTTTTACAGAAATATTCACACTGTCAAATACTGTGACGAAGATTTG
TGTATTTCTGGCGTCATGGGAACAAGCCATCAACCAGAGATCAATCTCAA
AGTCATGCCTCAAAAGTACGAAGATCTTTACAATGAAGTAAAAGACGATT
CCGTGAAAGACCACTGGGGAAAAGATGAATACGAAAAGTTTGTTAATAGT
TAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024646-exon-sc0000506-1575043694:48965..48990 | TCONS_00024646-exon-sc0000506-1575043694:48965..48990 | Clytia hemisphaerica | exon |
| TCONS_00024646-exon-sc0000506-1575043694:47919..48858 | TCONS_00024646-exon-sc0000506-1575043694:47919..48858 | Clytia hemisphaerica | exon |
| TCONS_00024646-exon-sc0000506-1510915933:48965..48990 | TCONS_00024646-exon-sc0000506-1510915933:48965..48990 | Clytia hemisphaerica | exon |
| TCONS_00024646-exon-sc0000506-1510915933:47919..48858 | TCONS_00024646-exon-sc0000506-1510915933:47919..48858 | Clytia hemisphaerica | exon |
| TCONS_00024646-exon-sc0000506-1491911889:48965..48990 | TCONS_00024646-exon-sc0000506-1491911889:48965..48990 | Clytia hemisphaerica | exon |
| TCONS_00024646-exon-sc0000506-1491911889:47919..48858 | TCONS_00024646-exon-sc0000506-1491911889:47919..48858 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000506 | supercontig | sc0000506:47919..48990 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015926 | Cytolysin/lectin |
Blast
The following BLAST results are available for this feature:
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