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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024689 ID=TCONS_00024689|Name=TCONS_00024689|organism=Clytia hemisphaerica|type=transcript|length=1924bp
AGAGGCACCGTGTTAGAAAAATTGAAGCAAGAAAACGTTTCTAAGAGTTG
ATTGGTTGTCAGTGCATTGGACTTTGACAAGAAAAGATAATGAAACACTA
TCTGAACTTCACAGTGCTGTTATTAGCCTTGGCATCGATCTCTGCAGTAC
CGTTGATTCTACCAGGGGTCGTTGATCCGCAGACATCGAGTTTATTCAAC
AAGTTGGTGACAAAGAATAATTTTGATACTTTCACCAAAAAAAAACCGAT
AATGGTGATTATGTTCTTCAAGTCCTGGTGTCCTTATGTAAAAAGATTCC
TTCCCGAATGGAAGAAAGCAACAGAGACGTTAGAGAAACAAGGAAAATAC
ATCTTAGCCCGATCGGATTGTGATGGCACAGGCAAAACATTATGTGATCA
TCGTGATATCCAAGTCAAGCAAGTTCCAACTGTTTTGTTATTCAAAAACG
GAAAACGAGTTTCCGACGTGTATTGCGGAACAAAAGATGCTGTTTTCAGT
GCAGCTTCCGTTCTGAAATCTGTTGACGAAGCTAAACGAACAGACGACAT
CACAGGCGTTTGTACTGCAATCAAACTTCCTGCCCCTACCACTACTACCG
TGCAACCAAAACCAAACCAAGGGCAAAATCATCTGTCTGTCACAATTTAA
ACGAAAGTCTAATATTTATATCTATTATGAAAGAACCTTCCTTTATATTA
ACCATATTTTTATCACTGGTGTTATTTTTACTATTaactcggagaaaaat
tttttttatgcaCTGAAATTTTGTCACTAATGATAAAATGTTATAGCAAC
ATGTATTCTTAGACCCAGAGAATCAGATTTTAAGACTTCATGGTGCAACA
CgtcataaaacccagctaaaaccTTGTAAAATCACGGGGgtgaattttgg
ccaaatttaaTGGGTTACAATGCGGCATACAGCGACGCTAGTGACCAAAC
TGCTCTACCCTGTGGAAATCCGACCCAAAAACTTGCTTTACTCTTCGGAA
ATCCGACCCAAAAACGTGTCCAACCCTTCGGAAATCTGACCCCGAAAACT
TGGTCCAGCCCTTGGAAATCCGACCCCAGGGACATTGACATTCCTTCGGA
CATCCGATGTCCTCAACCAGGGGgtacggactatttctggaaaagcccaa
tctaaAAATTGGTATATCTTTTGACACAGTTATCCAaattaattcaaatt
ttgatagatTCTAAATATAGAACACTTTataaaattgatgacgtcatcaa
agaaTGACcacataaattttcaaaagaaagttCATCTTCAGAATGGATAT
TAATCTTATTAATATCTTACAAGTCGGCGATTATATTATAGATATTCTct
ttggctttcagaaaatcaaaacagaattgaaaaatctttatttgttcAAC
TATAAAGGGCGTTTTTGCCACCTGAGACCTGGGACCCTAACGCACATTAA
CGTTAATATAACGTTAGAGGAACGttaaaaaaacgttgtgttcCAGCTGG
ATTGTATCAATGTCCAACCTTTATTTGGTAAGCGTTAGTCGAAATCAGTA
ATCTATAAATAAGGATGTAAAGGCTCTTAATCTGTCATTATCTTACTTAA
TATGATTGTATTGCAAATATTTTTTggtgaaatttttgaattttattgat
ttatgaGAAGAATTATAATAGAGAGGAATTGTTTTTAGAGAATCGGTGCC
TATATGAAAATCCTCGGACATTAGAATTTTTGAGActctaataatttttt
tgtttttttctctccaAATTATGAGTTAAAATTTTATTCACTATTTTGTT
AagtcatatttttatttttgatacatATTTACTTTTCATATAGTAAAACC
TATGTACATTGTTTTTGCATCTAACTAAGATAAAAgagtattcttaaaaa
aaaccccgtgtgtttgaaaataat Run BLAST on NCBI transcript from alignment at sc0000507:147159..153877+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024689 ID=TCONS_00024689|Name=TCONS_00024689|organism=Clytia hemisphaerica|type=transcript|length=6719bp|location=Sequence derived from alignment at sc0000507:147159..153877+ (Clytia hemisphaerica)
AGAGGCACCGTGTTAGAAAAATTGAAGCAAGAAAACGTTTCTAAGAGTTG
ATTGGTTGTCAGTGCATTGGACTTTGACAAGAAAAGATAATGAAACACTA
TCTGAACTTCACAGTGCTGTTATTAGCCTTGGCATCGATCTCTGCAGTAC
CGTTGATTCTACCAGGGGTCGTTGATCCGCAGACATCGAGTTTATTCAAC
AAGTTGGTGACAAAGAATAATTTTGATACTTTCACCAAAAAAAAACCGAT
AATGGTGATTATGTTCTTCAAGTCCTGGTAAGCCCATAAACCACAGTTTA
GATTTACCAGTATGGACAAGCAGAGTGTTGGTAACAATTTTTTCGTGCCT
GATTTTCACTTACAGCTAAACTTTTCAAGAATTATGACCTTTTTAAATGC
TCAAGTTTTGTGCTTGGTTTTGTTGTATCAAGAGGGTCATTGGCGACAAT
GCACAGCatgtaaaattctcaaaaaataaaaatcttttttttgaaaattg
taaagtttgcaataaagttttttgagaaaaatctttTGAGAGATGCCACC
CACTGAATCCTAAAAGAAATCCACCGTACATGGTATTATCGTGTCAGATA
GCTTACAAAATTCAAACACTTATTTCGATGGTCGCTTTTACTTTTCGATG
GTCGGTTTTGCTTGTCGAAGGCCACTCTTACTTTGTCGATGGTCAAATTC
TATAAGTCAATGGTCGAAAAAAGAATCATTGATTGATCGAAAAAAAGCAT
TGAGAAAGCCAAGGGCTGAACAAATTTGAATAAGGTGATAAAAAAGTCAA
TTGGTCAATCTGTCCTACGACATGACCGCACGACTATCTGACTCCATACC
ATTCCCTCATCTACAGAATCCACAATGGGGCAAAATCAAGTACAAAATTC
GATCCTTGATTCTATTCGTTTATTGGTTGCAGGTGTCCTTATGTAAAAAG
ATTCCTTCCCGAATGGAAGAAAGCAACAGAGACGTTAGAGAAACAAGGAA
AATACATCTTAGCCCGATCGGATTGTGATGGCACAGGCAAAACATTATGT
GATCATCGTGATATCCAAGTCAAGCAAGTTCCAACTGTTTTGTTATTCAA
AAACGGAAAACGAGTTTCCGACGTGTATTGCGGAACAAAAGATGCGGGTA
AGATATTTTACAGCAAAAGTTCGGGGTTTCTGACTAGGTAGAACGTCCAA
GGATATCAGCAACAAATATCTTTCTACTGGCAAACATAAAGTTCTATGTT
TAGCATTGACTGTCACATTAACTCTCACATAAACTAGCCATAGCTTTCAC
TAACTGCCACCCGCTAGTACAAATGCTTGTAAAAACTAATTAATGCTAAT
TAAGGCTTTTTAATGCTTTAAAGCAAAAGTTTGGAAATTATTTGGAATAG
TTAGAATGATTCTTCTCTACAGAATTTTTTGAGATATCAATGAATAAGCT
AACATAAATGAAACATATTTTTTTTCTAAAAATGTGAATTACTTTTTACA
AAGAATAAAATGCAAATCTTAAAACATTCATTAGGAAAAGTGTCCAGGTA
GAATCAATTACagatactaaaccagtcaaaagacatgcaactatatttat
ttcaaccaatttgaaatataaatgaaacatagtagaactaaacagcataa
gaaatgctatgagtcagaaacataacgagtaggaaccaaaaattgtcagg
taacaacgtacttaggagtttttccaacggtttaacaaaggatatcgtga
tccaaaattgtttacattaaatggatttaccagtaNNNNNNNNNNNNNNN
NNNNNNNNNNNNNaccaaaaattgacaggtaacaacgtacttaggagttt
ttccaacggtttaacaaaggatatcgtgatccaaaattgtttacattaaa
tggatttaccagtaTTCTAGAAGCTGTAACGGCGTCGTGTAAAGGGtgga
agatgataggacgtaaagtggtaatagtatcagtaacaaggcaatattga
tgagcaggaagcaggtataaacaggaaatagcgtacattcaggacttttt
ccaacggcatgatAAGGGATCTCATGGCCAAAATTGtctacattaaaaag
atatgccagttatcttgcagttgtaacacagcaatatcgtgtagaaggat
ggaaaatcatgacgtaacgtggtaatagtagcgNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNgtaatattgcgttgtcaaggtaaacg
aatccACATTCATAAAATAAGcttaaatggaaaataagaaacatgaaatt
tattAGATTCAATATAatgagtgtactgaaatttcctcaaaatagtATAC
ACACAAAAAGTTCTTTCAATTTCcgataataatttcccaaatagtgccgG
TAAGTGTCAACAAGAACAAACGCTTAACATAAAACTGCATAATAGATCTA
TTATAAAAGCAAGCAcacttaatgaaaaaaaaatgtacttACTGTCAAAG
TACTATAATACAGGATCTTTATGTATTCTTGTTGGGAGTAGAGTCTGCTG
AATGACGATTGTTGAATTATTTAGTTACAGCGAATTCAATTTccaacaat
aatcacttttgtccatattcattCATTGTATTGTTCTACTACTATTATct
attatcattttaatcattgttcattattgttCTGTGGTAAAAATTAAACA
TCAATCCGTTCACATTATTGTAATCACTAAGAACTTGGAAGTAATAAATG
TAAattcaaatcaataaaataaaatttgtacaaaatcatAAAGTATCTCA
CAGTCACAAATAATGAGTCTTGACTGCAGACTATAGAGACTACTTGTTTT
TTAATTCTTCCAGAAATTTCCACGCACCTATATCTTCTTCCTTTCCTGAA
TGTTAACCAATCggacaaattttatatataagcgGATAGGAAGAAATGAA
AACCCGCCCTAAAAAGGAGTGTAAAATTCCCGCGGCGCTTGACGTAAAAA
ATAAAAGCCGTcctagaaaaaaacaaacaataccGACCATTCACGGAAAA
GACTAACTACGGATAGGCTTgcgcgacaacaacaacaaaacaaaaatccg
agattccagtccaacaATCCTTGCGcctgaagctatgagtgcctcctcac
tcgctgacgctcgttgcgggggcaataagaattcttgatatgcgtaaatT
TGATTACGTAAAGATTTTAACCATATATGGTAAAAAGATCACGTCATGGG
GgcccaaatcaatttttttgccaaatataGTTAAAAATTACGTCATCACG
GGGGTCAAATCATTACGTAATTcaacttacgcatatcaagaatcataaaa
aaaaattgtcaagtGCATTTGATCCTTTATCACATGTGTATTCCTTACAG
AGGGAAAAGACTTAGATATTTGCCTGGGTttatttttcctgatttttctg
aTATATCTTTCAGTTTTCAGTGCAGCTTCCGTTCTGAAATCTGTTGACGA
AGCTAAACGAACAGACGACATCACAGGCGTTTGTACTGCAATCAAACTTC
CTGCCCCTACCACTACTACCGTGCAACCAAAACCAAACCAAGGGCAAAAT
CATCTGTCTGTCACAATTTAAACGAAAGTCTAATATTTATATCTATTATG
AAAGAACCTTCCTTTATAGTAACCATATTTTTATCACTGGTGTTATTTTT
ACTATTaactcggagaaaaattttttttatgcaCTGAAATTTTGtcacta
atgataaaatcttatAGCAACATGTATTCTTAGACCCAGAGAATCAGATT
TTAAGACTTCATGGTGCAACNCAAGTTGGTGACAAAGTATAATTTTGATA
CTTTCACCAAAAATAAACCGATAATGGTGATTATGTTCTTCAAGTCCTGG
TAAGCccataaactttttaaaatttaccAGTATGGACAAGTAGAGTGTTG
GTAACAATTTTTTCGTGCCTGATTTTCACTTACAGCTAAACTTTTCAAGA
ATTATGACCTTTTTAAATGCTCAAGTTTTGTGCTTGGTTTTGTTGTATCA
AGAGGGTCATTGGCGACAATGCACAGCatgtaaaatcctcaaaaaataaa
aatctttttgaaaattgtaaagtttgcaataaatttttttgagaaaaatc
tttTGAGAGATGCCACCCACTGAATCCTAAAAAAAATCCACCGTACATGG
TATTATGGAGTCAGATAGCTTACAAAATTCAAACACTTATTTCGATAGTC
GCTTTTACTTTTTGATGGTCGGTTTTGCTTGTCGAAGGTCACTCTTACTT
TGTCGATGGTCAAATTCTATAAGTCGATGGTCGAAAAAAGAATCATTGAT
TGATCGAAAAAAAGCAATGCGAAAGCCAATGGCTGAACAAATTTGAATAA
GGTGATAAAAAAGTCAATTGGTCAATTTATCCTACGACATGACCGCACGA
CTATCTGACTCCATACCATTCCCTCATCTACAGAATCCACAATGGGGCAA
AATCAAGTACAAAATTCGATCCTTGATTCTATTCGTTTATTGGTTGCAGG
TGTCCTTATGTAAAAAGATTCCTTCCCGAATGGAAGAAAGCAACAGAGAC
GTTAGAGAAACAAGGAAAATACATCTTAGCCCGATCGGATTGTGATGGCA
CAGGCAAAACATTATGTGATCATCGTGATATCCAAGTCAAGCAAGTTCCA
ACTGTTTTGTTATTCAAAAACGGAAAACGAGTTTCCGACGTGTATTGCGG
AACAAAAGATGCTGGTAAGATATTTTACAGCAAAAGTTCGGGGTTTCTGA
CTAGGTAGAACGTCCAAGGATATCAGCAACAAATATCTTTCTACTGGCAA
ACATACAGTTCTATGTTTAGCATTGACTGTCACATTAACTCTCACATAAA
TaagaattcttgatatgcgtaaatTTGATTACGTTAAGATTTTAACCATA
TATGGTAAAAAGATCACGTCATGGGGgcccaaatcaatttttttgccaaa
tataGTTAAAAATTACGTCATCACGGGGTCAAATCATTACGTAATTcaac
ttacgcatatcaagaatcataaaaaaaaattgtcaagtGCATTTGATCCT
TTATCACATGTGTATTCCTTACAGAGGGAAAAGACTTAGATATTTGCCTG
GGTttatttttcctgatttttctgaTATATCTTTCAGTTTTCAGTGCAGC
TTCCGTTCTGAAATCTGTTGACGAAGCTAAACGAACAGACGACATCACAG
GCGTTTGTACTGCAATCAAACTTCCTGCCCCTACCACTACTACCGTGCAA
CCAAAACCAAACCAAGGGCAAAATCATCTGTCTGTCACAATTTAAACGAA
AGTCTAATATTTATATCTATTATGAAAGAACCTTCCTTTATATTAACCAT
ATTTTTATCACTGGTGTTATTTTTACTATTaactcggagaaaaatttttt
ttatgcaCTGAAATTTTGTCACTAATGATAAAATGTTATAGCAACATGTA
TTCTTAGACCCAGAGAATCAGATTTTAAGACTTCATGGTGCAACACgtca
taaaacccagctaaaaccTTGTAAAATCACGGGGgtgaattttggccaaa
tttaaTGGGTTACAATGCGGCATACAGCGACGCTAGTGACCAAACTGCTC
TACCCTGTGGAAATCCGACCCAAAAACTTGCTTTACTCTTCGGAAATCCG
ACCCAAAAACGTGTCCAACCCTTCGGAAATCTGACCCCGAAAACTTGGTC
CAGCCCTTGGAAATCCGACCCCAGGGACATTGACATTCCTTCGGACATCC
GATGTCCTCAACCAGGGGgtacggactatttctggaaaagcccaatctaa
AAATTGGTATATCTTTTGACACAGTTATCCAaattaattcaaattttgat
agatTCTAAATATAGAACACTTTataaaattgatgacgtcatcaaagaaT
GACcacataaattttcaaaagaaagttCATCTTCAGAATGGATATTAATC
TTATTAATATCTTACAAGTCGGCGATTATATTATAGATATTCTctttggc
tttcagaaaatcaaaacagaattgaaaaatctttatttgttcAACTATAA
AGGGCGTTTTTGCCACCTGAGACCTGGGACCCTAACGCACATTAACGTTA
ATATAACGTTAGAGGAACGttaaaaaaacgttgtgttcCAGCTGGATTGT
ATCAATGTCCAACCTTTATTTGGTAAGCGTTAGTCGAAATCAGTAATCTA
TAAATAAGGATGTAAAGGCTCTTAATCTGTCATTATCTTACTTAATATGA
TTGTATTGCAAATATTTTTTggtgaaatttttgaattttattgatttatg
aGAAGAATTATAATAGAGAGGAATTGTTTTTAGAGAATCGGTGCCTATAT
GAAAATCCTCGGACATTAGAATTTTTGAGActctaataatttttttgttt
ttttctctccaAATTATGAGTTAAAATTTTATTCACTATTTTGTTAagtc
atatttttatttttgatacatATTTACTTTTCATATAGTAAAACCTATGT
ACATTGTTTTTGCATCTAACTAAGATAAAAgagtattcttaaaaaaaacc
ccgtgtgtttgaaaataat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024689-exon-sc0000507-1491911889:147159..147435 | TCONS_00024689-exon-sc0000507-1491911889:147159..147435 | Clytia hemisphaerica | exon |
| TCONS_00024689-exon-sc0000507-1510915933:147159..147435 | TCONS_00024689-exon-sc0000507-1510915933:147159..147435 | Clytia hemisphaerica | exon |
| TCONS_00024689-exon-sc0000507-1575043694:147159..147435 | TCONS_00024689-exon-sc0000507-1575043694:147159..147435 | Clytia hemisphaerica | exon |
| TCONS_00024689-exon-sc0000507-1491911889:151808..152022 | TCONS_00024689-exon-sc0000507-1491911889:151808..152022 | Clytia hemisphaerica | exon |
| TCONS_00024689-exon-sc0000507-1510915933:151808..152022 | TCONS_00024689-exon-sc0000507-1510915933:151808..152022 | Clytia hemisphaerica | exon |
| TCONS_00024689-exon-sc0000507-1575043694:151808..152022 | TCONS_00024689-exon-sc0000507-1575043694:151808..152022 | Clytia hemisphaerica | exon |
| TCONS_00024689-exon-sc0000507-1491911889:152446..153877 | TCONS_00024689-exon-sc0000507-1491911889:152446..153877 | Clytia hemisphaerica | exon |
| TCONS_00024689-exon-sc0000507-1510915933:152446..153877 | TCONS_00024689-exon-sc0000507-1510915933:152446..153877 | Clytia hemisphaerica | exon |
| TCONS_00024689-exon-sc0000507-1575043694:152446..153877 | TCONS_00024689-exon-sc0000507-1575043694:152446..153877 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000507 | supercontig | sc0000507:147159..153877 + |
Blast
The following BLAST results are available for this feature:
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