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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024719 ID=TCONS_00024719|Name=TCONS_00024719|organism=Clytia hemisphaerica|type=transcript|length=1275bp
TTACCGATACCAAACAATTCATTGGTAACAATCAACATGAACGATTCATT
GCAACTTTTTGAGAAAGAACTATCTCTTGTCACAAAGCCCATTCCAAAAG
TCACCAATGCTGATGATGTTTTGATTCGTGTTGCATATTCTGGAATTTGT
GGAACAGATCTTCACATTATTGCTGGAGAGTTTCCATCCTCAACAAAAGC
GTTGACTCTTGGTCATGAATTCTCTGGAATTATTGAAAAAGTCGGTTCAT
CTGTGACAACTTTTAAGCCAGGTGATCGCGTTGTTGTGAATCCCAACAAT
AATTGTCATGTTTGTTCCTATTGTATCCAAGGACAAATTCATTTTTGCAA
GACAGGAGGATTAAGATCTACGGTTGGTATTTGGAGAAATGGAGGCTGGT
CACAATTTTGCAGAGTTCCCTCTTGTCTTGTTCATAAAGTACCCGATAAT
CTTCCATTACGCTTAGCAGCTTTAGTTGAGCCATACTCTTGTATCTGTCG
TGGTTTCCATCAATTAGGAGAAGTCAACCCTGAAGCTAAAATTCTCATTT
GTGGTGCTGGAATTATTGGTCTTTTATGGTCGACATTGTTGCATTTTAAA
GGGTTTCGAAATATCGTTGTCAGTGAAATATCTGAAAAACGGCGCAACAT
GGTGTCAGCTTTGAATTTAGGTTTCACAGTCGCTTTACCTGATTATTTGG
TCAGTCAACAAAGAGAATCGATTCGAAACGGTGATGACGATTGGGGTTTT
GATGTTATCATTGATTGCACAGGTGTTCCAAAAGCCATCGAGCAAGCTTT
CAACTGGCTTAGAAGAGGAGCCAAGTTTGTTATCTTTGGCTGCTGCCCAA
AAGATTCTAAAATTGAGTTGAATCCTTTTGATATTTTCAACAAAGAGTTA
AAAATTATTGGATCACTTATCAATCCATTTACCTTTCCAACCGCAATTCG
GTTAACAGAAGATATGGCTGGTGCATATTTGGATTTTGGAAAGCTAGGAA
TCCAATCCTTTCCATTACACGAGTACTCGTCAGCTCTCACTGCACTGAAA
AATGGGGTTGTCTCCAAGGCACTGTTCGTTATTGATGACTCCCTTGATTC
AAAGGTTTAACATTTCCCTCGCCACTGAAATTTTTGCTATTCATtgtttt
tgtattattttatgttgtattttttattgtatttttattgTATTAATGTC
TTCTGATCTCTTACAAAATGgttaatttatttattaatttttagagAGAT
AAACAGTTCGTTTGAGGTCATTGAC Run BLAST on NCBI transcript from alignment at sc0000509:83040..84916+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024719 ID=TCONS_00024719|Name=TCONS_00024719|organism=Clytia hemisphaerica|type=transcript|length=1877bp|location=Sequence derived from alignment at sc0000509:83040..84916+ (Clytia hemisphaerica)
TTACCGATACCAAACAATTCATTGGTAATATTTCAAGCTCTATCagtaaa
aatcaatcaatcactcTATCGAtgatgtattcatgatatgcaccattgca
atgtcttctgacattacatcacggacccaacagctgattggttgtaagtg
acgtaaaatctgtcaatacatcactttcaaccaatcagctgttaggtccg
tggaagacattgcaatggttcATATCATGAATTAGTGAATAAATGGATCG
ATCCATTTTCTgcagaaaacaaaagtgatccTTTTCCCATGGATGGTCAC
ATTTTCTTTATATGCATAAAATTAAATTGCTTTAATTCTATGATAGTGAA
TATACAAAAATACAAGACTCtaacattttcatttatttaaagTATTTTCA
GACCATTATAATTGCAAAAacatttaaatccatttttattGCCACTTTAT
TTCTGCTGTTTTTATTTAAAGCTTGAATCAGCTTGAATGGTTATGCCTCA
TATCCTAAGTTGGTATGTCTACTTtcgaaatataaaaacaaataggTCGC
TTCAAGACCTTATATCCTAGCAAGTTTCTgtgcaaaaattacatatagAT
GTAACCCTCATCATCTTCTTTCTAAGGTAACAATCAACATGAACGATTCA
TTGCAACTTTTTGAGAAAGAACTATCTCTTGTCACAAAGCCCATTCCAAA
AGTCACCAATGCTGATGATGTTTTGATTCGTGTTGCATATTCTGGAATTT
GTGGAACAGATCTTCACATTATTGCTGGAGAGTTTCCATCCTCAACAAAA
GCGTTGACTCTTGGTCATGAATTCTCTGGAATTATTGAAAAAGTCGGTTC
ATCTGTGACAACTTTTAAGCCAGGTGATCGCGTTGTTGTGAATCCCAACA
ATAATTGTCATGTTTGTTCCTATTGTATCCAAGGACAAATTCATTTTTGC
AAGACAGGAGGATTAAGATCTACGGTTGGTATTTGGAGAAATGGAGGCTG
GTCACAATTTTGCAGAGTTCCCTCTTGTCTTGTTCATAAAGTACCCGATA
ATCTTCCATTACGCTTAGCAGCTTTAGTTGAGCCATACTCTTGTATCTGT
CGTGGTTTCCATCAATTAGGAGAAGTCAACCCTGAAGCTAAAATTCTCAT
TTGTGGTGCTGGAATTATTGGTCTTTTATGGTCGACATTGTTGCATTTTA
AAGGGTTTCGAAATATCGTTGTCAGTGAAATATCTGAAAAACGGCGCAAC
ATGGTGTCAGCTTTGAATTTAGGTTTCACAGTCGCTTTACCTGATTATTT
GGTCAGTCAACAAAGAGAATCGATTCGAAACGGTGATGACGATTGGGGTT
TTGATGTTATCATTGATTGCACAGGTGTTCCAAAAGCCATCGAGCAAGCT
TTCAACTGGCTTAGAAGAGGAGCCAAGTTTGTTATCTTTGGCTGCTGCCC
AAAAGATTCTAAAATTGAGTTGAATCCTTTTGATATTTTCAACAAAGAGT
TAAAAATTATTGGATCACTTATCAATCCATTTACCTTTCCAACCGCAATT
CGGTTAACAGAAGATATGGCTGGTGCATATTTGGATTTTGGAAAGCTAGG
AATCCAATCCTTTCCATTACACGAGTACTCGTCAGCTCTCACTGCACTGA
AAAATGGGGTTGTCTCCAAGGCACTGTTCGTTATTGATGACTCCCTTGAT
TCAAAGGTTTAACATTTCCCTCGCCACTGAAATTTTTGCTATTCATtgtt
tttgtattattttatgttgtattttttattgtatttttattgTATTAATG
TCTTCTGATCTCTTACAAAATGgttaatttatttattaatttttagagAG
ATAAACAGTTCGTTTGAGGTCATTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024719-exon-sc0000509-1491911889:83040..83063 | TCONS_00024719-exon-sc0000509-1491911889:83040..83063 | Clytia hemisphaerica | exon |
| TCONS_00024719-exon-sc0000509-1510915933:83040..83063 | TCONS_00024719-exon-sc0000509-1510915933:83040..83063 | Clytia hemisphaerica | exon |
| TCONS_00024719-exon-sc0000509-1575043694:83040..83063 | TCONS_00024719-exon-sc0000509-1575043694:83040..83063 | Clytia hemisphaerica | exon |
| TCONS_00024719-exon-sc0000509-1491911889:83666..84916 | TCONS_00024719-exon-sc0000509-1491911889:83666..84916 | Clytia hemisphaerica | exon |
| TCONS_00024719-exon-sc0000509-1510915933:83666..84916 | TCONS_00024719-exon-sc0000509-1510915933:83666..84916 | Clytia hemisphaerica | exon |
| TCONS_00024719-exon-sc0000509-1575043694:83666..84916 | TCONS_00024719-exon-sc0000509-1575043694:83666..84916 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000509 | supercontig | sc0000509:83040..84916 + |
Blast
BLAST of TCONS_00024719 vs. Swiss-Prot (Human)
Match: DHSO (Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4) HSP 1 Score: 95.9005 bits (237), Expect = 7.935e-22 Identity = 104/356 (29.21%), Postives = 153/356 (42.98%), Query Frame = 1
Query: 67 ELSLVTKPIPKVTNADDVLIRVAYSGICGTDLHIIA----GEFPSSTKALTLGHEFSGIIEKVGSSVTTFKPGDRXXXXXXXXXXXXSYCIQGQ------IHFCKTGGLRSTVGIWRNGGWSQFCRVPSCLVHKVPDNLPLRLAALVEPYSCICRGFHQLGEVNPEAKXXXXXXXXXXXXWSTLLHFK--GFRNIVVSEISEKRRNMVSALNLGFTVALPDYLVSQQRESIRNGDDDWGF--DVIIDCTGVPKAIEQAFNWLRRGAKFVIFGCCPKDSKIELNPFDIFNKELKIIGSLINPFTFPTAIRLTEDMAGAYLDFGKLGIQSFPLHEYSSALTALKNGVVSKALFVIDDS 1092
+L L PIP+ ++VL+R+ GICG+D+H G F K + LGHE SG +EKVGSSV KPGDRV + P +C G+ I FC T +G +F + + +K+PDN+ AL+EP S G H + G + TLL K G +VV+++S R + A +G + L S Q E R + G +V I+CTG +I+ R G V+ G + + + L I +E+ I G T+P AI + +A ++ L FPL + A K G+ K + D S
Sbjct: 19 DLRLENYPIPE-PGPNEVLLRMHSVGICGSDVHYWEYGRIGNF-IVKKPMVLGHEASGTVEKVGSSVKHLKPGDRVAIEPGAPRENDEFCKMGRYNLSPSIFFCATP--------PDDGNLCRFYKHNAAFCYKLPDNVTFEEGALIEPLSV---GIHACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATR--LSKAKEIGADLVLQISKESPQ-EIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAAI--REVDIKGVFRYCNTWPVAISM---LASKSVNVKPLVTHRFPLEKALEAFETFKKGLGLKIMLKCDPS 353
The following BLAST results are available for this feature:
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