TCONS_00024734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024734
Unique NameTCONS_00024734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length251

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024734 ID=TCONS_00024734|Name=TCONS_00024734|organism=Clytia hemisphaerica|type=transcript|length=251bp
AAAGAAACCGAAATATAATATTTGATAGTACCTGCAGTTTTGAATTTCCC
CGGGTTGAGTAAACAATACTGTTCGGCAAAAGATTCCATCATGCGATCAA
TCTTTTGAGCTTCTCCTGGCAACCGGAAACTCCacaaaaaATACCTGAGT
GCAGCATCCAATGTTTTATTTTCGAAATCATGAAGTTGAACAAATTCCTT
TAAAACTTTCAACTGTAGGTCCAAACTGAAAGAAAACAAATGTTCCAAAG
T
Run BLAST on NCBI

transcript from alignment at sc0000509:229819..230379+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024734 ID=TCONS_00024734|Name=TCONS_00024734|organism=Clytia hemisphaerica|type=transcript|length=561bp|location=Sequence derived from alignment at sc0000509:229819..230379+ (Clytia hemisphaerica)
AAAGAAACCGAAATATAATATTTGATAGTACCTGCAGTTTTGAATTTCCC
CGGGTTGAGTAAACAATACTGTTCGGCAAAAGATTCCATCATGCGATCAA
TCTTTTGAGCTTCTCCTGGCAACCGGAAACTCCacaaaaaatctctaaaa
gttgaaaaattttgtgGATTTTACGGGCTGTATTAAGTGCGTTTTGTTCA
TGATACTGAAGGAAAGCTGCGATCACAACTATCAACGGTAAAACGCAAAA
TTCTGGAGTTGATTCAATTAATCATTCCATTAAACAAAGTTCAATTTAAG
TTTTGATATCTTCCACTTTTGGCTTTGTTATCATAacagacagacggacg
gacTGACTTACAAAGGTTAATTTAATAGAGGGGGCCTTAAAAGAATGTCT
AAAAGTTAGATTACTGGGTTATCCACCCAAAATATTATATACTCTCTAAC
ATACCTGAGTGCAGCATCCAATGTTTTATTTTCGAAATCATGAAGTTGAA
CAAATTCCTTTAAAACTTTCAACTGTAGGTCCAAACTGAAAGAAAACAAA
TGTTCCAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013891XLOC_013891Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024734-exon-sc0000509-1491911889:229819..229958TCONS_00024734-exon-sc0000509-1491911889:229819..229958Clytia hemisphaericaexon
TCONS_00024734-exon-sc0000509-1510915933:229819..229958TCONS_00024734-exon-sc0000509-1510915933:229819..229958Clytia hemisphaericaexon
TCONS_00024734-exon-sc0000509-1575043694:229819..229958TCONS_00024734-exon-sc0000509-1575043694:229819..229958Clytia hemisphaericaexon
TCONS_00024734-exon-sc0000509-1491911889:230269..230379TCONS_00024734-exon-sc0000509-1491911889:230269..230379Clytia hemisphaericaexon
TCONS_00024734-exon-sc0000509-1510915933:230269..230379TCONS_00024734-exon-sc0000509-1510915933:230269..230379Clytia hemisphaericaexon
TCONS_00024734-exon-sc0000509-1575043694:230269..230379TCONS_00024734-exon-sc0000509-1575043694:230269..230379Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000509supercontigsc0000509:229819..230379 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	2.93438	0	0	0	0	3.90521	1.80677	1.05569	0	0	0	1.51428	0	0	0	2.20179	0	0	0	2.01767	0	0	0	2.02193
Blast
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BLAST of TCONS_00024734 vs. Swiss-Prot (Human)
Match: CYH3 (Cytohesin-3 OS=Homo sapiens GN=CYTH3 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 9.504e-24
Identity = 41/65 (63.08%), Postives = 51/65 (78.46%), Query Frame = -1 
Query:   27 DLQLKVLKEFVQLHDFENKTLDAALRYFLWSFRLPGEAQKIDRMMESFAEQYCLLNPGKFKTAGT 221
            +  +KVL+ FV+LH+F +  L  ALR FLWSFRLPGEAQKIDRMME+FA +YCL NPG F++  T
Sbjct:  125 EFNIKVLQAFVELHEFADLNLVQALRQFLWSFRLPGEAQKIDRMMEAFASRYCLCNPGVFQSTDT 189
The following BLAST results are available for this feature:
BLAST of TCONS_00024734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CYH39.504e-2463.08Cytohesin-3 OS=Homo sapiens GN=CYTH3 PE=1 SV=2[more]
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