TCONS_00024810 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024810
Unique NameTCONS_00024810
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length632

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024810 ID=TCONS_00024810|Name=TCONS_00024810|organism=Clytia hemisphaerica|type=transcript|length=632bp
AAGTAGTTCGCGAGCGCAATGTCTCTCAAGAAAACATCGAAGAGTGGCGT
CTTCAAGAAGCGATCGGGAATCAACcagtttttgagtgaaaaatctcTAT
TTCAAAGCCTTCAAACAAACGAAACCAAGTCTTTCGAattgaaaaaagag
aataaaaggAAATGCAGATACAAACAGCTGGAGTTTTCCCAAACTGGCTC
TTCAAAGGGATCAAAGTTGTATCAAGATCGAAAGCAGAAATCCAGTAACC
AAGAGAACGTTATAACTATCATACCAGAAACAGATACAGNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATCATACCAGAAACAGATACAGAGGGTGAAGCAGA
GGGGAGCAAAATGACTTTGATGGCTGAACGTTTTCAACCAAAAGTGGTAT
TGAAAGACATTATTAACAATGCAGTGATTCTGATAGTAATACTTGACCTT
GTAAATTGTATGGGATGGGACTTTTTAGCTACCTTCTGTTTCGCCCTCTT
TGTGCTATCAAaggctttttgaaaattctgaaatgcTCTTTTTCTCTTTA
TACCTATGGTCAATCAGTTTGTTATGATTTGC
Run BLAST on NCBI

protein sequence of TCONS_00024810-protein

>TCONS_00024810-protein ID=TCONS_00024810-protein|Name=TCONS_00024810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MSLKKTSKSGVFKKRSGINQFLSEKSLFQSLQTNETKSFELKKENKRKCR
YKQLEFSQTGSSKGSKLYQDRKQKSSNQENVITIIPETDTXXXXXXXXXX
XXXXXXXXXXXXXXXXSYQKQIQRVKQRGAK
Run BLAST on NCBI

transcript from alignment at sc0000510:143011..143642

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024810 ID=TCONS_00024810|Name=TCONS_00024810|organism=Clytia hemisphaerica|type=transcript|length=632bp|location=Sequence derived from alignment at sc0000510:143011..143642 (Clytia hemisphaerica)
GCAAATCATAACAAACTGATTGACCATAGGTATAAAGAGAAAAAGAgcat
ttcagaattttcaaaaagcctTTGATAGCACAAAGAGGGCGAAACAGAAG
GTAGCTAAAAAGTCCCATCCCATACAATTTACAAGGTCAAGTATTACTAT
CAGAATCACTGCATTGTTAATAATGTCTTTCAATACCACTTTTGGTTGAA
AACGTTCAGCCATCAAAGTCATTTTGCTCCCCTCTGCTTCACCCTCTGTA
TCTGTTTCTGGTATGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTATC
TGTTTCTGGTATGATAGTTATAACGTTCTCTTGGTTACTGGATTTCTGCT
TTCGATCTTGATACAACTTTGATCCCTTTGAAGAGCCAGTTTGGGAAAAC
TCCAGCTGTTTGTATCTGCATTTccttttattctcttttttcaatTCGAA
AGACTTGGTTTCGTTTGTTTGAAGGCTTTGAAATAgagatttttcactca
aaaactgGTTGATTCCCGATCGCTTCTTGAAGACGCCACTCTTCGATGTT
TTCTTGAGAGACATTGCGCTCGCGAACTACTT

Coding sequence (CDS) from alignment at sc0000510:143011..143642

>TCONS_00024810 ID=TCONS_00024810|Name=TCONS_00024810|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000510:143011..143642 (Clytia hemisphaerica)
TCATTTTGCTCCCCTCTGCTTCACCCTCTGTATCTGTTTCTGGTATGATN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNCTGTATCTGTTTCTGGTATGATAGT
TATAACGTTCTCTTGGTTACTGGATTTCTGCTTTCGATCTTGATACAACT
TTGATCCCTTTGAAGAGCCAGTTTGGGAAAACTCCAGCTGTTTGTATCTG
CATTTccttttattctcttttttcaatTCGAAAGACTTGGTTTCGTTTGT
TTGAAGGCTTTGAAATAgagatttttcactcaaaaactgGTTGATTCCCG
ATCGCTTCTTGAAGACGCCACTCTTCGATGTTTTCTTGAGAGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013941XLOC_013941Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024810-proteinTCONS_00024810-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024810-exon-sc0000510-1491911889:143011..143642TCONS_00024810-exon-sc0000510-1491911889:143011..143642Clytia hemisphaericaexon
TCONS_00024810-exon-sc0000510-1510915933:143011..143642TCONS_00024810-exon-sc0000510-1510915933:143011..143642Clytia hemisphaericaexon
TCONS_00024810-exon-sc0000510-1575043694:143011..143642TCONS_00024810-exon-sc0000510-1575043694:143011..143642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000510supercontigsc0000510:143011..143642 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.87419	2.90472	1.17417	2.17863	0	0.0893777	0	0	0.595555	0.419493	0.0984518	0.748618	1.85201	1.82223	1.09469	0.633358	1.03298	0.977595	0.584393	1.48449	1.15769	0.234165	2.23855	1.56185	0.565282	0.633518	11.7451	11.3317	0.793199	1.4066
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00024810 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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