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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024816 ID=TCONS_00024816|Name=TCONS_00024816|organism=Clytia hemisphaerica|type=transcript|length=1735bp
NNGGAGGAAAAATTTAGAAGCCAATTTACACATTTTGGAGGTTATCGAGC
ACGGTTACAGAATTCCCTTTAGGTATAATCCACCACCTTTTGAGCTTAAG
AATAACAAATCAGCTTTACGAAACAAAAAGTTTGTCGAAGAGACCCTAGA
AGGCTTGTTAAGAGAGGGAAAGATTTTCGTCCAGAGGCCGTTTGCCACCA
ACCCTTTATCAGTAGCGGAGGATCCAAGTGGGAAGAAAAGATTGATATTA
GATGtaagttttttaaatcaatttttgtggaaagaaaagataaaattcGA
CGATTGGAAAGTATTCGAAGATTTTATTCATTCAGATGAAGAGGCGNttt
taaatcaatttttgtggAAAGAAAAGATAAAGTTCGACGATTGGAAAGTA
TTCGAAGATTTTATCCATTCAGATGAAGAGGCGTATTTATTCAAGTTTGA
TTTAAAAAGTGGGTATCATCATGTTGACATACACAGCGACCACCAAAAGT
ATTTAGGTTTTTCTTGGAATTTTGGGAAAGGTCCAAAGAGATATTTTTTG
TATTCTGTTTTGCCTTTTGGTTTGAGTTCGGGGCCTctaatttttactaa
aagagtaagggttctaataaaattttGGAGATCTCACGGGATAAGGATAG
CCTGTTTTTTAGACGATGCTTTGTCAGTAGAATATTTGAGGgaaaaagct
aaagaaaattcacttttcgttAAAGATTCCTTAGATCAATCAGGTTTTGT
AATCAATGAGGAGAAGTCCCAATGGGATCCAGTCACAAAAATTCAATGGT
TGGGCATTCAGGTAGATTTCGAAAACAAAACTTACTCTATTTCGGAGAAG
CGCATTACTTCGTTATTGAAGtcacttgaaaatatttttgatcatcCAAC
ACGCACTTCTGCAAGACAGCTCTCTTGTGTGGCAGGTAAAATTGTCTCTA
TGAAATTTGTTTTAGGAAATGTAATTCGATTAAAAACTCGTCTAATTTAC
AAATTAATTGAATCCAGGGTCTCCTgggataagaaaataaatgttaCCTT
TTTTCATGACGTTTTGAGAGAATTATTGTTTTGGAAGTTTAATCTACGTG
AGTTGAATAACAAATCAataagaaaatatgaaattccagatttaaaagtt
ttttcagatgcAAGTGCCACGGGAATTGGTGCAAttcttgataaaaatgt
atGTTATAGAAACTTGAAGCGGTTAGAAATAGAAGAAAGTTCTACCTTTA
GAGAATTATTGGCTATTAAATATGCAATAGATTCTTTTGACGAAATGTTA
GATAGTAAAACGATTTTATGGCACACAGACAATATAAGCACAGCGATCAT
TATTAGGGTAGGTAGCAATAAAGATTTGTTGCAAGGTTTAGCGAACAATA
TATATTTATCTTGTAAGAAAAAGGATGTAAAATTAACTGTCACATGGATT
TCTAGAGACAAAAATGGACAAGCTGACAAGGTAAGCAAAACAACAGATTA
CGACGATTGGTTTGTGAAATCTTCTTTTGTGCACAGTTTGGAAACAAAGT
GGGGCAAGTTTAGCATAGATTTATTTGCAGATAGTAATAACACAAAATGC
GAACGCTTTTGCTCAAGGTATTTTTCTCCAGGGAGTTTCAAGGTAGATGC
CTTTTCGTTCGATTGGTCTGGAGAATTTTGCTATATGGTTCCTCCCCCCT
ATTTGATTCCCAAAACAATTAAACATTTCCTAGCG Run BLAST on NCBI protein sequence of TCONS_00024816-protein >TCONS_00024816-protein ID=TCONS_00024816-protein|Name=TCONS_00024816-protein|organism=Clytia hemisphaerica|type=polypeptide|length=578bp
XRKNLEANLHILEVIEHGYRIPFRYNPPPFELKNNKSALRNKKFVEETLE
GLLREGKIFVQRPFATNPLSVAEDPSGKKRLILDVSFLNQFLWKEKIKFD
DWKVFEDFIHSDEEAXLNQFLWKEKIKFDDWKVFEDFIHSDEEAYLFKFD
LKSGYHHVDIHSDHQKYLGFSWNFGKGPKRYFLYSVLPFGLSSGPLIFTK
RVRVLIKFWRSHGIRIACFLDDALSVEYLREKAKENSLFVKDSLDQSGFV
INEEKSQWDPVTKIQWLGIQVDFENKTYSISEKRITSLLKSLENIFDHPT
RTSARQLSCVAGKIVSMKFVLGNVIRLKTRLIYKLIESRVSWDKKINVTF
FHDVLRELLFWKFNLRELNNKSIRKYEIPDLKVFSDASATGIGAILDKNV
CYRNLKRLEIEESSTFRELLAIKYAIDSFDEMLDSKTILWHTDNISTAII
IRVGSNKDLLQGLANNIYLSCKKKDVKLTVTWISRDKNGQADKVSKTTDY
DDWFVKSSFVHSLETKWGKFSIDLFADSNNTKCERFCSRYFSPGSFKVDA
FSFDWSGEFCYMVPPPYLIPKTIKHFLA Run BLAST on NCBI transcript from alignment at sc0000510:199511..201245 Legend: exonCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024816 ID=TCONS_00024816|Name=TCONS_00024816|organism=Clytia hemisphaerica|type=transcript|length=1735bp|location=Sequence derived from alignment at sc0000510:199511..201245 (Clytia hemisphaerica)
CGCTAGGAAATGTTTAATTGTTTTGGGAATCAAATAGGGGGGAGGAACCA
TATAGCAAAATTCTCCAGACCAATCGAACGAAAAGGCATCTACCTTGAAA
CTCCCTGGAGAAAAATACCTTGAGCAAAAGCGTTCGCATTTTGTGTTATT
ACTATCTGCAAATAAATCTATGCTAAACTTGCCCCACTTTGTTTCCAAAC
TGTGCACAAAAGAAGATTTCACAAACCAATCGTCGTAATCTGTTGTTTTG
CTTACCTTGTCAGCTTGTCCATTTTTGTCTCTAGAAATCCATGTGACAGT
TAATTTTACATCCTTTTTCTTACAAGATAAATATATATTGTTCGCTAAAC
CTTGCAACAAATCTTTATTGCTACCTACCCTAATAATGATCGCTGTGCTT
ATATTGTCTGTGTGCCATAAAATCGTTTTACTATCTAACATTTCGTCAAA
AGAATCTATTGCATATTTAATAGCCAATAATTCTCTAAAGGTAGAACTTT
CTTCTATTTCTAACCGCTTCAAGTTTCTATAACatacatttttatcaaga
aTTGCACCAATTCCCGTGGCACTTgcatctgaaaaaacttttaaatctgg
aatttcatattttcttatTGATTTGTTATTCAACTCACGTAGATTAAACT
TCCAAAACAATAATTCTCTCAAAACGTCATGAAAAAAGGtaacatttatt
ttcttatcccAGGAGACCCTGGATTCAATTAATTTGTAAATTAGACGAGT
TTTTAATCGAATTACATTTCCTAAAACAAATTTCATAGAGACAATTTTAC
CTGCCACACAAGAGAGCTGTCTTGCAGAAGTGCGTGTTGgatgatcaaaa
atattttcaagtgaCTTCAATAACGAAGTAATGCGCTTCTCCGAAATAGA
GTAAGTTTTGTTTTCGAAATCTACCTGAATGCCCAACCATTGAATTTTTG
TGACTGGATCCCATTGGGACTTCTCCTCATTGATTACAAAACCTGATTGA
TCTAAGGAATCTTTaacgaaaagtgaattttctttagctttttcCCTCAA
ATATTCTACTGACAAAGCATCGTCTAAAAAACAGGCTATCCTTATCCCGT
GAGATCTCCaaaattttattagaacccttactcttttagtaaaaattagA
GGCCCCGAACTCAAACCAAAAGGCAAAACAGAATACAAAAAATATCTCTT
TGGACCTTTCCCAAAATTCCAAGAAAAACCTAAATACTTTTGGTGGTCGC
TGTGTATGTCAACATGATGATACCCACTTTTTAAATCAAACTTGAATAAA
TACGCCTCTTCATCTGAATGGATAAAATCTTCGAATACTTTCCAATCGTC
GAACTTTATCTTTTCTTTccacaaaaattgatttaaaaNCGCCTCTTCAT
CTGAATGAATAAAATCTTCGAATACTTTCCAATCGTCgaattttatcttt
tctttccacaaaaattgatttaaaaaacttaCATCTAATATCAATCTTTT
CTTCCCACTTGGATCCTCCGCTACTGATAAAGGGTTGGTGGCAAACGGCC
TCTGGACGAAAATCTTTCCCTCTCTTAACAAGCCTTCTAGGGTCTCTTCG
ACAAACTTTTTGTTTCGTAAAGCTGATTTGTTATTCTTAAGCTCAAAAGG
TGGTGGATTATACCTAAAGGGAATTCTGTAACCGTGCTCGATAACCTCCA
AAATGTGTAAATTGGCTTCTAAATTTTTCCTCCNN Coding sequence (CDS) from alignment at sc0000510:199511..201245 >TCONS_00024816 ID=TCONS_00024816|Name=TCONS_00024816|organism=Clytia hemisphaerica|type=CDS|length=1734bp|location=Sequence derived from alignment at sc0000510:199511..201245 (Clytia hemisphaerica)
CGCTAGGAAATGTTTAATTGTTTTGGGAATCAAATAGGGGGGAGGAACCA
TATAGCAAAATTCTCCAGACCAATCGAACGAAAAGGCATCTACCTTGAAA
CTCCCTGGAGAAAAATACCTTGAGCAAAAGCGTTCGCATTTTGTGTTATT
ACTATCTGCAAATAAATCTATGCTAAACTTGCCCCACTTTGTTTCCAAAC
TGTGCACAAAAGAAGATTTCACAAACCAATCGTCGTAATCTGTTGTTTTG
CTTACCTTGTCAGCTTGTCCATTTTTGTCTCTAGAAATCCATGTGACAGT
TAATTTTACATCCTTTTTCTTACAAGATAAATATATATTGTTCGCTAAAC
CTTGCAACAAATCTTTATTGCTACCTACCCTAATAATGATCGCTGTGCTT
ATATTGTCTGTGTGCCATAAAATCGTTTTACTATCTAACATTTCGTCAAA
AGAATCTATTGCATATTTAATAGCCAATAATTCTCTAAAGGTAGAACTTT
CTTCTATTTCTAACCGCTTCAAGTTTCTATAACatacatttttatcaaga
aTTGCACCAATTCCCGTGGCACTTgcatctgaaaaaacttttaaatctgg
aatttcatattttcttatTGATTTGTTATTCAACTCACGTAGATTAAACT
TCCAAAACAATAATTCTCTCAAAACGTCATGAAAAAAGGtaacatttatt
ttcttatcccAGGAGACCCTGGATTCAATTAATTTGTAAATTAGACGAGT
TTTTAATCGAATTACATTTCCTAAAACAAATTTCATAGAGACAATTTTAC
CTGCCACACAAGAGAGCTGTCTTGCAGAAGTGCGTGTTGgatgatcaaaa
atattttcaagtgaCTTCAATAACGAAGTAATGCGCTTCTCCGAAATAGA
GTAAGTTTTGTTTTCGAAATCTACCTGAATGCCCAACCATTGAATTTTTG
TGACTGGATCCCATTGGGACTTCTCCTCATTGATTACAAAACCTGATTGA
TCTAAGGAATCTTTaacgaaaagtgaattttctttagctttttcCCTCAA
ATATTCTACTGACAAAGCATCGTCTAAAAAACAGGCTATCCTTATCCCGT
GAGATCTCCaaaattttattagaacccttactcttttagtaaaaattagA
GGCCCCGAACTCAAACCAAAAGGCAAAACAGAATACAAAAAATATCTCTT
TGGACCTTTCCCAAAATTCCAAGAAAAACCTAAATACTTTTGGTGGTCGC
TGTGTATGTCAACATGATGATACCCACTTTTTAAATCAAACTTGAATAAA
TACGCCTCTTCATCTGAATGGATAAAATCTTCGAATACTTTCCAATCGTC
GAACTTTATCTTTTCTTTccacaaaaattgatttaaaaNCGCCTCTTCAT
CTGAATGAATAAAATCTTCGAATACTTTCCAATCGTCgaattttatcttt
tctttccacaaaaattgatttaaaaaacttaCATCTAATATCAATCTTTT
CTTCCCACTTGGATCCTCCGCTACTGATAAAGGGTTGGTGGCAAACGGCC
TCTGGACGAAAATCTTTCCCTCTCTTAACAAGCCTTCTAGGGTCTCTTCG
ACAAACTTTTTGTTTCGTAAAGCTGATTTGTTATTCTTAAGCTCAAAAGG
TGGTGGATTATACCTAAAGGGAATTCTGTAACCGTGCTCGATAACCTCCA
AAATGTGTAAATTGGCTTCTAAATTTTTCCTCCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024816-exon-sc0000510-1491911889:199511..201245 | TCONS_00024816-exon-sc0000510-1491911889:199511..201245 | Clytia hemisphaerica | exon |
| TCONS_00024816-exon-sc0000510-1510915933:199511..201245 | TCONS_00024816-exon-sc0000510-1510915933:199511..201245 | Clytia hemisphaerica | exon |
| TCONS_00024816-exon-sc0000510-1575043694:199511..201245 | TCONS_00024816-exon-sc0000510-1575043694:199511..201245 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000510 | supercontig | sc0000510:199511..201245 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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