TCONS_00024821 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024821
Unique NameTCONS_00024821
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1778

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024821 ID=TCONS_00024821|Name=TCONS_00024821|organism=Clytia hemisphaerica|type=transcript|length=1778bp
tgtaaagtgattttttcaaataattcaaGaATACACTATAATCAAAAGAA
TGGCAGGGAAAAGCATTGTTGAAGTCATTATCAAATACATTTTGATAGTG
ATTTGCTCAACCTTTTATGTTGCCATCAGTGCGATTGGCTGGTTCAAGTC
CAGAAATAAACCATCAAGACCTATCAATATGAAAGAAGAGCCAAGTATAT
TACAAGATCCTGCTCTCGGAAAACATGGTACTATCCGATTACCTGGACGT
AATATTGAAATGCATTACGTTGCAAATGGTGAAAGATCAAAACCTTTGAT
GTTGCTTGTCCATGGTTTCCCAGAATTCTGGTATTCATGGCGTCATCAAC
TTGTAGAATTCTCCAAGGATTATTATACTGTTGCCGTTGATATGACAGGT
TATGGTGGTTCGACCATACCAAAAGATTTAGAACGTTACGATTCAGTTGA
AATTGCAGAGGATATCAAAGAGTTTATTTTGGCGTTGGGTTATGAAAAAT
GTACCTTGGTGGCTCATGATTGGGGTGCAGCAGTTTCTTTTGTGGTTGCC
AGCAattttggaGATGTTGTTGAGAAACTTATTATAATGAATGGTCCCAG
TGGGCGTGGAATGGCTCGTTGTATGTCCTTTACTCAACTCCTCAAGTCCA
GCTACATGTTCTTCTTTGCTGCACCATATCTTGCTGAATATGTTTTGGGA
CGTGATCAAAGTTCAGTATTGAAATTGTTCAACAAAGCAAGAAAAATGTT
GACGGATGAAGAGATAGATGCTTACAGATACATGTTCACCAAGAACGGAT
TTACTGGACCGTTGAATTATTATCGATTTGCTCTGTTGAGACGTGGTCGA
ACGGTTCAACGCGAAATCAAAGCACCGACGCTCATTATTTGGGGAACGGC
TGATACTGCACTGGGTAAAGAGGTCGCAGCGGCATCAGGAAAGGACTGCA
CAACATGTGAGATCAAATACATTGAAGGTTCAACACACTGGGTCAACCAA
GAATTTCCCGATGAAGTGAACCGATTGATGCGTGATTATTTGAAATGCTG
ACGATAAAGATTAAATTATAAATACAAAAGTCACTTCAACGTTCATCCAA
CGTTTCACGAACATCACGGACGTGAAATTAATGTTGTTTTGACGTTGAGT
ATTTAAGATGGATGATCAAAATGAGAATCGAATTATTACCTTTGAATGAT
AGTCTGGCGGATTTCTAACTGTTTTGGCGGAAATCAGGTCTTAAGAATAG
GTTATAATATAAAAAAAACTTTCTCAACCAAGGCACGAGTCATAGTTAAA
AAAAGTGATATTTGGAACGATTTATTTTCTGAAAAATAATTATTACACTG
TGCTCTTACAAATAAGGCAAAGATAATGTTAGGGTTAATGTTATAGGTAA
TTGATTGTTAAAAGCTCCATTTTGAAAAGCATTGAAAAATGTAATTCGCT
AACCCATGCTAACCTATACAAACGGCTTTTTCTGGGAAAACGAAGCTATT
GAGTTTAAAAAAGCCTCATGAGAAACTTTTTCTGTTGAGGATCAGGAAAA
TCAAAGTTCATTATAGAATGTTTGATGTTTTTTTTTTTTATCAGTTAGGT
TTTTTTGTAGACGTGACAAATTCTAAATGCATCACATGTAAAAGATTTGG
GTAAAAATGATTGTAAATTAACGTTTTTTAGATTTTTTGTTGTTTTTAAA
CTATGATATACGCAAGAATATTCACTCTGAATGTAATTCGTCATATGCTT
CTCTTTCGGCACTGGTTCTGACttccgg
Run BLAST on NCBI

transcript from alignment at sc0000511:9025..23422+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024821 ID=TCONS_00024821|Name=TCONS_00024821|organism=Clytia hemisphaerica|type=transcript|length=14398bp|location=Sequence derived from alignment at sc0000511:9025..23422+ (Clytia hemisphaerica)
tgtaaagtgattttttcaaataattcaaGGTAAAGACATATTATATCATT
CATTTGTTTCTCTTGTTTACAAGCTCTTTATTTATATATCTGTAAATATC
AAATTTCGACTTTACTACGCTACGAAATACTGGAAAAAAGTGGTTTATTa
gtgttttttcttaaaaaatgacACCTTTTGgaaagagaaattttttgaat
gcgTGAAGCTAATCTTAAGTATTATAgcccaaaatttaagttagtaTTTC
CTCCTTTGATTGGTAAAAGCTTTAgatttataacatttttagCTTTCTCA
CAACCTTACTTCAAAATTTGTATCGTATACGTATTAGAATCTTCTAATAA
TATCCACATGCGTCTTTTATCTcgacaatacacctttcccgtaattcaaa
cttctcagaaatcgCCCAGGAAATTGTGTGCTCCATCGTTGTGTAttaaa
ttgtttgggaggtaaacgaaTGCGTTTTTGTCTGTGAGGGGTTAGTGGGT
TTTcagcttgtaacttttgatagcaatCTTCTTTTAGCATAAGATTTtta
gggtggtataatatcataaaTAGATGGAATATAATAAAATTTGAGGGGTT
TTTAATATAATCCCTCACGAACATTTTCAAACTCTCATCTATCgctaaat
tcgcgaaaattaagttttttatgCTACATTTTATTCAGCTAAAAATGAGT
CTCCATTCCTTGAATGTCTCtatatttcaaatcaattttcattcctcata
gccgttcgagttatggagactctactgtattgaCAAATGGATCTTGTAAT
CAAACTaacaaaaaatgtgaaaatctgaaaaaaattcagCAATTCGCTAA
ATTAATTCCTCGTGAAAATTTACAGTCGAAGTTAGttgcgaaaataagtc
ccacaAGAAATGAATTATTTCACGAGGGAAACTGTCTTGCAAAAATTAGT
tgccgcgaaaattaatttccTTAAGGTAGcattttaaagataaaaaactG
CCCATTTTTGCCATGAAACAGAGCgtcactttaaaaaaatttgtatcATT
ATAGTGCTTTAAATAACTTGACACTAATTTATGATTATGCTATCAAAGCC
ATGGTTTTTTCCTTAGTAATGATAACGGTCAAAGAATCAGCTTTAAAAGT
ATCATTCAATTTGAGAGCCATATGCAGAGTTAATAAAAAGGTTTTCAAGA
TTGATCAAATGTTTAGGTTTCATTACAAAGTTATGGTATcagctttaaaa
aaagttcgagGTGATTTGGTTGAGTGAAAATTTTAtaccgggtggtccaa
aaaaaacttccataagtttcaaattttgacgtagaGCTCTCTATTGTGTT
ATCGACTTCAAATTTCGTATGGCTAAACTTCAACTTAAAAATCAAGGCAC
TCCTGAAAATCTCATTGtcagaaaataatattttgtaaagttatgtggtt
ttctaaaaaagaggTCAAAATTGACTTGTTCAAAACTGACGTCAATTAGA
ATTCTTTCTCGTTTGTGAACTTAATGGTTCGtacaaatcattaaaaaaca
tCGATAAAGTTTAAGTTATAAGACTATTTCTTTGCAACAGGTTCTTCCAC
GGTTTCACAATCAATATTGATGTCTAACTATAAAATAATTtgatcagagg
aatgtaaagagatggaaaaacagcttcttgaaaacaatggaaaaacggct
cgtcatataccaggtctcttgcccttaagggagtttaNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNagttttttttggaccacccggtaattcttatt
tattttagTAACATTTAGTAATTTAGTATTTTTCCGTCATTCCGTAACCA
AAATTGATTTCTCAATTAAAAACCATTCTTCCTTCACTGGCAATAAACTT
TTGTTCGGTTTCAAATTACAAAGTAAGAGATAGAAACATGCCAAGTATTT
CATTCCAAAAAGGCTTCCTTAAaatgttacacgtttttttttatataagg
aaccttaactttgctctgagcctggagttccttatttttacagaaaattt
cagcctcaaagttccttttgAGTTCCTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTTcttagcctgagcagttccttaacaatt
ccttattttttggactactttcagcctcgagttccttataaacgtgttcc
ttataaaaaaaaaacgtgtactgcattttaaatttttccgtCATTCCGTA
ACCAAAAAGAAATTATGGACTGCTCAATCCAGAAAAGGTCAAATATGCTC
TCAATGAGTTTTCTTGATCAATTGTTGGCTTGTATTTATTGGAATTTTGA
TAGCTACAAAAATGATTCTGTGTATTCTAAGGGATATGGCTGTGGCTAAA
GACTTGAATTTGAAGGctttttagcttgaaaaatggcaaaatacaGTTTC
TGGAATGATGTAGCTCTAAACTAAAACATATAAAATAAGTTCAAGATACT
ATTAGAAATGATATGCATTAATTTGAGGATGTTtactgaaaagaaatttt
ctgcCTTAAGATGCAATCTTGGTatccctttaaaataattttgccctaat
tagtttttagtgaTAACTACATATTGCtaaagttttcttttgaaatataa
cacttcacatttctcatatcaACAATCTGTGAAGTgatatttattgattg
attggtaacTTTGGTACATgcatttgtttatgtttgatttttaatttcgc
ttagcgaaagtattacgatagcctttctgcggcggcggtgtcatcggaaa
aaaaattagaaaacgaaagtactcgatacggtggacgaacttacTAAATT
TAACTTTACACAGTTTACACGTTCGTTTagccacggacgattttcgcgcg
TTTTTATAGTGGTCCGATAactgtggagataataaatTACATCAAGCCTT
TTTGACAACTGCATTATTAGCTCCACAGTTTGGAGCGTACGGCTTCATAA
CTTTctacatttttgtaaacattcatcgtgagaattttttaatcattttt
aatggctgcttttgaaacttgctgctgctgtatcaatttttatcatgttt
tctggccttttgtagagtatttaaagaggtttattattcgtttactacta
agtattttatgtttgtgtagttactgaatgcaccaataaattgataatgc
tcagtagATAAGTAGAAATAAAAAGAGTTACTTTTTCACAACATAAAACC
CTGCCTCTTCTTCactaaaactacaaacagcgCAGGTataatcttttttt
ccttttttcaccagatagtaatgtgttaatagtgaaaccacttgtgacaa
acagtcagttttaggaAGTATCTTTTAGAAATCAAGTTAATTGAAATTCA
GCGATCATTTTATTAATCGAACTGTCaaactaccgtgagatcgggtaact
tgcgtCAGTGGAGGCTAATGCATAGCCCCTCAAATGAAGttaaatggtag
agtaGAGCTTCGAGCAGAGCTGCgcagttcttttgttttgtaattttgat
gGCTATAtgtaagtttccctccactgatgcaagttatacccgacttcaca
gtatCCATCAAAGtcaaacgatagctgttcgattacccaAACGATAGCTG
TTCAATTACCGAACCTTACTtggtaagaaatttttttgattacCGTATAT
ATAGGGTGTAAACTGGAaccatgaaaaaatactttttttggattttcaaa
attgtcacaattttttatcaaaatttatcatattgttAGACTTCTTGCGC
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTTTGACCATTTCCTGGCCTttaatagt
cttaaaatggacaaaaaatgccatttttgccgttttttgctACTACCGCG
AATCAGATACCCCTGGGGCAAACGGTGGATTTTTGACTTATGGACCTcaa
aattgcgcaaaaagtcttacaatataataaattttgataaaaaattgtga
gaattttgaaactctaaaattcaaaatccagTTTACACCCTAatataagt
ttgatgacagtttttatTGGTgtccgatgaagtttgattggtgttcgatg
gGTTTGGTCAGTAagtttttccagcttttctTCCACAAtaggatgataga
tattggcctGCTCTTTATGGTTTAgtgtgggcgtctgctaatcagtcgtc
ggaatgtaaaaagaatgagCAACAAGGTAacaaatcaaactaatcgagct
GCAAttaaacttcaccgatcttgatacaccttttgctaatctggattttc
attttgatatataaaaaactccagtggtaccgttgttctgtataagattc
ccattttcgtactaagattcttgttgcttttctggaatctttcccctata
tatttttcacgggataaccagcaagagattggggagggtttgtttaatgg
gatgcagtttaaatagttaccgtcaactgctctaacttaggaCTATCTGA
CGAAACATGgtacggcaattcggccaccatttcaccaaacctccaaagtc
atttgatttgagttaaggaacggcgtattaaaaaatacaggatttctttt
tcgattttacagtaagtgaaaatacagaccagatgcaacagtcccatgtt
tcgaccaatcgtcccaagttagagcagttgacggtgcaaaggagtcattg
ttgtgatttgcTTGAAGGGCCATTAATCGATTACGTATAATATTGATTCT
TTTACTGTTTTTAGCACGTATATACTACTTTCACTTGTgtgtaaacattt
attttatgattttgtaagGTTTACAGTCAACCTAGAAATAgttaaataaa
taattttaaaggTCTATTACATCATCAGAATAATAATTGTATTAATAACT
TTATAAGTGAGGTTTAAGTCAATTTGTATCTGGTGGGAAAATTTGAGTGA
CAGTGGTAAATAAATCTCGACCAAAGTCTGTATCCTtaagttacaagctt
ttcttaatatattttcatatggATTATTGCATTgagattttggaaatttt
tggcaaaaaatagccaaattttaatctcaaggagtattatttctttaaag
cttataaagttggctagtttttaccctgccattttcaagtccagaagctg
gagctcaacaaCTCAACTGTTTTTTTGCCTGTGATTTTGATGGTGGTGTG
CCATCATTccatatcaaaaagtgaagataGTATTTTTCTGACAAGGCata
ttctcaattttagaaaattctactgtttatagaaagaagttgatataaac
tttgcccaagtgaaacacaaaatgaagtttctggcatcaaagaatgaaaa
gttctttttttcttcttcattttcaaagaattttaaaattcattttctca
AGTTTATTACGATATTacagttctctgaattattcttctggattgaaaga
ttttttacgcttatatataaaaaggaattttttagtcgcatttttttaga
aatctttttgttcttaatggattgagatttttcataagaaaacagGGTAT
TTACGACCTGTAATACAATGTGCATTTTTTGTGTAACGTttcattcaaaa
tatataatgcataatgctgatagtttatgttcaaatattatgcgaaattt
tcgactttaagtcgtcttgtttgttttaaagaccagcctacagctctGTC
GAGGTAAGAAGATCGTTTGTTTTTGTTAGAGTGCCTTTTTTTCGGAACTG
GGATTAGATTTTGCCATTCCCCATTTAGGAGGACGAACACCAAGGAAGGT
CTCATTACAGAACTGATGGAGTTTTTCTCTCGTTTTGGGCAATTTCCAAA
ATTCTGGAGGGAGACCATCAGAGCCTGGGGCTTTTCTGCTTTTCATTTGG
TATGTGGCTCtgtattcttttgaaaataagtcAGATGGTATTATATTCCA
TTGATCAAAAATTTTACGTATAGGATCAGGAGGAGCAGTGTGAAGGTTTT
TGAAATGAGTTTCCCAACATTTAAGGCAGTTTTCTCCTTCAGTGAAGTTA
ACACTGTCAGCTTTTTGCCAGAAATTCTTTAGAAGATCCCATGCTTGTTT
TACTGAAGAGGATGATGCAGGTtgttcaaaaatgatttcaagaTGTTATT
TATACGACATAtgatgatttttcttttaaaattctttgaatacGTGTATA
TTCCAACATACCATCTAAAAATTTCCAGAAATAGGACTAAAAATGAAAGC
CCCCCAAAGAATgctgaaaattgccaaaatggAACCATTTCTTTTGATCC
AAGAAAGAtcataatttttggacctaccccggtggggtagaggtcctatt
aattaacctgtgttcgttcgtccgaCTACgactaaaaaaagggtttttaa
gactttgtgaaaaatccgatagttaattttttctgattttttgtatgaaa
gttaTGATGAATGATATCCTTATCATtattggtaaaagatggctcaagca
gattgtcacaaaaaaaacttttcagctcatAAAACGAatatctttatcta
taagaatcgctatttataaacaatgttcttagtcatattatttttattag
tttttttaaagatgAAAATGTAACGGTGAAAGggcaatggtttgagtttt
ctagaaacacttattatttttcttggctgaaaaacgaatctttatttata
agaatcactatttataagcatagatcaatgttcttacccaaatttttatt
tttatgattatttttttctaaaagaagaaaatctcaCGAGAGCgcaatgg
tttgagttttctagaaacctcatttataaaaaagctgtgcatttttctga
aattggattgttcttataaaaaaatataaaaaattcaatagtgttgatag
tttctcccgATAGATATGCTgtcattatatttttttgtatcttgaccagt
tatgtcttatatgtatcattgtttcaatgttcattgattagttttgataa
ccaggtaggtccataaaagtatcacttgtttcttcTTCcaagctttaaat
tctgaaaaatgttaaatgcccaaaattgccaatatatttacAGCACTGAT
TGTAGATGTATGGAATGTCAAGTTTAGGAAAAGACTACCAGATTTGATTC
ATCATTTTCAAACCAGTAATGATTAGAAAATATAGAGGAATAGTTTATTT
TGTAGAAAATAAGTTAGTTTTCCACGAGTTACCATTGCTTATAAATTTGG
GAAGGTAATCAAGTAAAAGACATATCCACAATTTATAGCCATTGCTACCA
GGAATAGGACTGAATCTTTAGATTTTTCAAGggaaagaaatgaaattttg
agttatgaatTCTATGAACAGAAAGAACTTGCTTTgattagttttttttc
acaGTAGCTACAGTTGCTGGGTCTCAAAATGGCTAAAATAAACTGAACTT
GAGATATATGTAGTTTGCCTGTTGGATTTTAAAAGTAtcctaaattttct
aaatttcagaATACACTATAATCAAAAGAATGGCAGGGAAAAGCATTGTT
GAAGTCATTATCAAATACATTTTGATAGTGATTTGCTCAACCTTTTATGT
TGCCATCAGTGCGATTGGCTGGTTCAAGTCCAGAAATAAACCATCAAGAC
CTATCAATATGAAAGAAGAGCCAAGTATATTACAAGATCCTGCTCTCGGA
AAACATGGTACTATCCGATTACCTGGACGTAATATTGAAATGCATTACGT
TGCAAATGGTGAAAGATCAAAACCTTTGATGTTGCTTGTCCATGGTTTCC
CAGAATTCTGGTATTCATGGCGTCATCAACTTGTAGAATTCTCCAAGGAT
TATTATACTGTTGCCGTTGATATGACAGGTTTATTAaacatttcttttca
attatttttcttttgctttgacTCTACATTGTAAAACAATGCTctattca
aaaatattctttattttaGCTAAAAATCGTGCTAGGACTGAGATTTTATG
GACTGAGATAAAAGCTAGATAAAGTCTGTTTCGGGATAACAAATAATGTG
AAATTGTAGCGCTATCTTTgccaaaaatgtacaaaaaattaCTTGGCAAA
AGTCAGTCGTCTAGATCAATTAGATCAATTTTATCTTTGATAGGTTATGG
TGGTTCGACCATACCAAAAGATTTAGAACGTTACGATTCAGTTGAAATTG
CAGAGGATATCAAAGAGTTTATTTTGGCGTTGGGTTATGAAAAATGTACC
TTGGTGGCTCATGATTGGGGTGCAGCAGTTTCTTTTGTGGTTGCCAGCAG
TAAGTCTAAAACAAAAAGTCTTTCATTTTGTTCTTCTTATACCTTTCTAT
AGTTTCTACACATAAAACCAACCTTACcaggggggtcagtgtactagaag
gcggcatgtatgtgtactacaaggtatttttcaaaacttgacacccactc
acccctgaagtacaccatactacatggaaaaatcccaaaaccaccccata
cccccatTTACTACCGGGTACTACCTGGAAAAATCACTgggtaaacattt
ttccaaaaatcgagaAATCAGGGAGactttttttttcggaaaactttttt
tttggaaaatcaggaaatcgggaaaacttttttccaaaaatcagaaaaac
aggaaaatgtttctcaaaaatccaaaatgcgtgagaaatcaaacttttca
aaaattgcgtgagaccATGTGAAAATGTGTGAGTCTCACACCCAATGCGT
GAGAACTGGCACCTCTGATGTTCGAATGTTTCAATTCGAATGTTAGAATG
TTTACATTAANacttttttccaaaaatcgggaaattgggaaaactttttt
ccaaaaatcaggaaatcgagAAATCGGGAAacctttttttcggaaaattg
ggaaattgggaaaactttttttccaaaaatcagaaaaacaggaaaatttt
ctcaaaaatccaaaatgcgtgagaaatcaaaattttcatgagaaatgcat
gagtctcacaaccaatgcgtgagagttgaCACCTCTAATGTACGaatgtt
gaatgtttgaattcacatgttcgaatgtttacattgactcgataaacctt
tatttcagtgggatctggtaggatttcaattcattccaagaagtttggaa
gaatgatctttgacaaacttggcttgatcaatCTATAATAGAACAACTTT
GCATTTCGATTTTAGCAGATAAGTTCTgaactaaaaaaaatttattttta
tttccacACTGTTAACATcaattttggacccaacacctctattttggtac
acaggtagtaaaaatcaaaatcgattttggacccaccaccccaattatag
tacacaggtagtacatgacaaatttttttctcaaacacccacccacccca
ggatacatgcTACCTTCTGGTACACTTGACCTTACCTCAGAAACACGGAT
TTAAAGGAGTTGGAGATTATTTATCTTTTCATTCTTCATAAATCGGTTTT
CGCTAGCTTAATTAACTAAAAAGTTGTAATAGtacagttttaatttttta
gattttggaGATGTTGTTGAGAAACTTATTATAATGAATGGTCCCAGTGG
GCGTGGAATGGCTCGTTGTATGTCCTTTACTCAACTCCTCAAGTCCAGCT
ACATGTTCTTCTTTGCTGTAAGTcttattaaagtatttttcaCGGATTAA
CCTAGTAATAATAGACAGTCATTCGATTGTTTTAAGGcttggctatctat
gaactaaacggaacattggaagcaGTGTGATTCGAACCGGTAACCCCTGG
TTTGAGGTGACCACTCGGTCATTGCTCTAAAAACATTGTTAAGTTATTAT
ACATTGATGGGCTGGActcttgttgataatttttcatATGCAGTATTTAA
GTCTTTCAACCCTTTTAAGGTTCTCTTGCAACTTACCCAGGTTGATCCCC
TTTTCATACACTTGAAAACCCGTCTtcggttaaaaaaaaaactccgaaAA
ATCATTCAACCTCTATTATATGAATTTAGACatagttttggaaaaaaaag
aatcaataatgtaataataCCATGCAATTGTTATATGTTTTTCAGCTCAG
CCAGGTGCTTTCATACTTTCTTTAGAACGCCACCGTATGACTCAAGGGAG
GCTAAGACCTTACGTATGCTTGTTAAAATAACTCTTTCTTTCTCTATCAG
GCACCATATCTTGCTGAATATGTTTTGGGACGTGATCAAAGTTCAGTATT
GAAATTGTTCAACAAAGCAAGAAAAATGTTGACGGATGAAGAGATAGATG
CTTACAGATACATGTTCACCAAGAGTAAGGTTTCTCTTTCAATAAATTCG
TGTTAAGTCAATTATAATTGGAGTCGTGAAGAGGGGAATAATAATTGTGG
AAAGGAAAGATAAACTAATGCCTAAGAGTCTCAAAAAttgtgttttgata
ttttttgtgtttttgttaaCTCTCTCTATAGCCAAATTATAGGTGAATTG
AATGGAAAGAATCTCAAACCTTAATAAATGGGTTGGAAAATGAATATCCT
TGGTgagacaataaaaaaagaaaaacattttcacaaaaattgataagACA
TAACATAACAAAAATTTCCCTGTTAGAAAATTTCCTGATTAACGAGTGGA
GATGTTTACTAGGTACCCGAGAGCACTACATCTCCAGGTTTTGTTGAATA
GCAGTTCGTGTTTAGTTTAAGAAGCCTGATCAAGTCGAGTAGTTAGAGAT
CAGTTTGaccctttttgaaattttcttttcctttatACTCTTTTAGACGG
ATTTACTGGACCGTTGAATTATTATCGATTTGCTCTGTTGAGACGTGGTC
GAACGGTTCAACGCGAAATCAAAGCACCGACGCTCATTATTTGGGGAACG
GCTGATACTGCACTGTAAGTCTTTCTTCCGGATGAGAGGGAGTTTTCaca
ttggtcatttgaagtaataaaaaactactcgttctttagaaaaagtaacg
aaaTTGTTTCATTACTgtttaacgaccaaccaaatcaaataagagcttgt
aaaaattcATCTCGTCCCCTTTCTTCTAACTAATCAAAATAATCTCTTTG
GAAAACgcttacattttttatttttaacattAGGAAACAGGTATATTTTC
AATTCTTGACTTACCTCATCCTCCAACTAATCTGAATGAGATCATTAATT
GTGAATCGTAAAAGTCAATAGAATAATGAAAACAGGAATCAATTGTTCAG
CATAGAatattgataatttgataaTGATACCTCGTTTTTGACTTATCCCA
TAAAAAGAGTGAATAttgaatttaaaggttttaagcTTTTGAACCATTGA
ACCAGGATCCACGTAGGTTACTACTAGGTATTACGTGAAGAAGTCTCTGA
TAAAAGAATGCTTTCCATTGTGATTTTAAAAGGGGTAAAGAGGTCGCAGC
GGCATCAGGAAAGGACTGCACAACATGTGAGATCAAATACATTGAAGGTT
CAACACACTGGGTCAACCAAGAATTTCCCGATGAAGTGAACCGATTGATG
CGTGATTATTTGAAATGCTGACGATAAAGATTAAATTATAAATACAAAAG
TCACTTCAACGTTCATCCAACGTTTCACGAACATCACGGACGTGAAATTA
ATGTTGTTTTGACGTTGAGTATTTAAGATGGATGATCAAAATGAGAATCG
AATTATTACCTTTGAATGATAGTCTGGCGGATTTCTAACTGTTTTGGCGG
AAATCAGGTCTTAAGAATAGGTTATAATATAAAAAAAACTTTCTCAACCA
AGGCACGAGTCATAGTTAAAAAAAGTGATATTTGGAACGATTTATTTTCT
GAAAAATAATTATTACACTGTGCTCTTACAAATAAGGCAAAGATAATGTT
AGGGTTAATGTTATAGGTAATTGATTGTTAAAAGCTCCATTTTGAAAAGC
ATTGAAAAATGTAATTCGCTAACCCATGCTAACCTATACAAACGGCTTTT
TCTGGGAAAACGAAGCTATTGAGTTTAAAAAAGCCTCATGAGAAACTTTT
TCTGTTGAGGATCAGGAAAATCAAAGTTCATTATAGAATGTTTGATGTTT
TTTTTTTTTATCAGTTAGGTTTTTTTGTAGACGTGACAAATTCTAAATGC
ATCACATGTAAAAGATTTGGGTAAAAATGATTGTAAATTAACGTTTTTTA
GATTTTTTGTTGTTTTTAAACTATGATATACGCAAGAATATTCACTCTGA
ATGTAATTCGTCATATGCTTCTCTTTCGGCACTGGTTCTGACttccgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013952XLOC_013952Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024821-exon-sc0000511-1491911889:9025..9053TCONS_00024821-exon-sc0000511-1491911889:9025..9053Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1510915933:9025..9053TCONS_00024821-exon-sc0000511-1510915933:9025..9053Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1575043694:9025..9053TCONS_00024821-exon-sc0000511-1575043694:9025..9053Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1491911889:18634..19002TCONS_00024821-exon-sc0000511-1491911889:18634..19002Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1510915933:18634..19002TCONS_00024821-exon-sc0000511-1510915933:18634..19002Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1575043694:18634..19002TCONS_00024821-exon-sc0000511-1575043694:18634..19002Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1491911889:19268..19423TCONS_00024821-exon-sc0000511-1491911889:19268..19423Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1510915933:19268..19423TCONS_00024821-exon-sc0000511-1510915933:19268..19423Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1575043694:19268..19423TCONS_00024821-exon-sc0000511-1575043694:19268..19423Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1491911889:20676..20791TCONS_00024821-exon-sc0000511-1491911889:20676..20791Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1510915933:20676..20791TCONS_00024821-exon-sc0000511-1510915933:20676..20791Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1575043694:20676..20791TCONS_00024821-exon-sc0000511-1575043694:20676..20791Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1491911889:21325..21448TCONS_00024821-exon-sc0000511-1491911889:21325..21448Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1510915933:21325..21448TCONS_00024821-exon-sc0000511-1510915933:21325..21448Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1575043694:21325..21448TCONS_00024821-exon-sc0000511-1575043694:21325..21448Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1491911889:21921..22038TCONS_00024821-exon-sc0000511-1491911889:21921..22038Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1510915933:21921..22038TCONS_00024821-exon-sc0000511-1510915933:21921..22038Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1575043694:21921..22038TCONS_00024821-exon-sc0000511-1575043694:21921..22038Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1491911889:22557..23422TCONS_00024821-exon-sc0000511-1491911889:22557..23422Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1510915933:22557..23422TCONS_00024821-exon-sc0000511-1510915933:22557..23422Clytia hemisphaericaexon
TCONS_00024821-exon-sc0000511-1575043694:22557..23422TCONS_00024821-exon-sc0000511-1575043694:22557..23422Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000511supercontigsc0000511:9025..23422 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
147.431	149.188	90.6744	78.4972	14.9079	20.0991	37.438	24.9387	65.3412	62.1842	58.4601	44.4978	31.4763	29.0551	30.8621	37.7233	27.0789	27.7943	28.8441	42.7571	28.533	24.9243	58.0629	55.4331	28.4469	31.7428	49.6829	44.1296	62.9476	55.9574
Blast
[Close]
BLAST of TCONS_00024821 vs. Swiss-Prot (Human)
Match: EPHX4 (Epoxide hydrolase 4 OS=Homo sapiens GN=EPHX4 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 5.654e-63
Identity = 118/314 (37.58%), Postives = 182/314 (57.96%), Query Frame = 2 
Query:  146 KSRNKPSRPINMKEEPSILQDPALGKHGTIRLPGRNIEMHYVANGERSKPLMLLVHGFPEFWYSWRHQLVEFSKDYYTVAVDMTGYGGSTIPKDLERYDSVEIAEDIKEFILALGYEKCTLVAHDWGAAVSFVVASNFGDVVEKLIIMNGPSGRGMARCM--SFTQLLKSSYMFFFAAPYLAEYVLGRDQSSVLK-LFNK-----ARK--MLTDEEIDAYRYMFTKNG-FTGPLNYYR--FALLRRGRTVQREIKAPTLIIWGTADTALGKEVAAASGKDCTT-CEIKYIEGSTHWVNQEFPDEVNRLMRDYLK 1045
            ++  +P+R    +  P+ L DP+LG H  +R+    +  HYVA GER KPLMLL+HGFPEFWYSWR+QL EF  +Y  VA+D+ GYG +  P   + Y    +  DIK+ + +LGY KC L+ HDWG  +++++A  + ++V KLI++N P        +     QLLKSSY +FF  P+  E++   +   VLK LF        RK   LT E+++AY Y+F++ G  +GP+N+YR  F+ L     +   +  PTL++WG  D  +  E+A  +         +  +  ++HW+ Q+ PD VN+L+  +LK
Sbjct:   49 QTFRRPAR----EHPPACLSDPSLGTHCYVRIKDSGLRFHYVAAGERGKPLMLLLHGFPEFWYSWRYQLREFKSEYRVVALDLRGYGETDAPIHRQNYKLDCLITDIKDILDSLGYSKCVLIGHDWGGMIAWLIAICYPEMVMKLIVINFPHPNVFTEYILRHPAQLLKSSYYYFFQIPWFPEFMFSINDFKVLKHLFTSHSTGIGRKGCQLTTEDLEAYIYVFSQPGALSGPINHYRNIFSCLPLKHHM---VTTPTLLLWGENDAFMEVEMAEVTKIYVKNYFRLTILSEASHWLQQDQPDIVNKLIWTFLK 355
The following BLAST results are available for this feature:
BLAST of TCONS_00024821 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EPHX45.654e-6337.58Epoxide hydrolase 4 OS=Homo sapiens GN=EPHX4 PE=2 ... [more]
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