TCONS_00024825 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00024825
Unique Name	TCONS_00024825
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	950

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000511:36751..40756+

transcript sequence

>TCONS_00024825 ID=TCONS_00024825|Name=TCONS_00024825|organism=Clytia hemisphaerica|type=transcript|length=950bp
atgttgacattagatcAACTTCAGAGAAAATTTGTCGTAACCATGGAAAT
GGATGAAAAAAGGtgataaaataaaaaaaatggatACTACACCCGAGAGA
AGGAAAATGAAAGCTAAACATGGTGCCAGCGGTGCATGGAAGCAAAGATT
TCGACAGGGATGCATGGAAAGATTACGTAACAAACGTCACGATTTTGTCA
ACTCACTTCGAAGCCAGAACGCTGGATCACCAGGATCGCCTTCTTCATCT
CAAGAGTATGTTAATCAAGTCATGTTGGAAGAATGGCAACAAATGAAACT
TGAAAGTCCTCTACTTAGTGGAAACAGCAGAGGCTTCAAAAGGAAAAATg
aatttgaAAGTGACGACGAAGAAGATTTCCCAGAAAGCATTGAAGAAGCT
CTCGATTACTTTCAAGAAATACAAAGAGAACTACTTAGAGAAGAGGAGCG
TATGTTAGCACAATATGAAGAACTGGCAAGCTTTGATGACCAATATATAC
ATGATACAATCAATATGTTATCAACAACAGCAGTCATATGCCCTGTTTGT
CAAAAaaataatttacTGCAAAACAAACACATCATATTCTGTAAATGTGG
CATTCGAGTTGATACGCAGACTGATGCCATAGATTTAGAATATGTACGAA
ATCAACTTCAAGAGTCTGTAAATGAGCACAGCTCAGCCTGTCAACATACA
CCATCTTTTCACGTCGCAGACCTGAGTGGAGTAGGAATCGAAAACCTTGT
GCTAAGCTGTCAGGTATGCGATTGTTTATCGATTATCATTTGATTTGAAT
TGATTGGCTTATATCACAGCCTCGTTTTGATTTTGCGTTGCTATCGTTAC
ATCACCGTTTTATAATAGTTAAgtgttttttaatttattttgtatttatg
taaataaaaattgaaaaaatactgGAGCATTTTATATTACCCAAGAAGTC

Run BLAST on NCBI

transcript from alignment at sc0000511:36751..40756+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00024825 ID=TCONS_00024825|Name=TCONS_00024825|organism=Clytia hemisphaerica|type=transcript|length=4006bp|location=Sequence derived from alignment at sc0000511:36751..40756+ (Clytia hemisphaerica)
atgttgacattagatcAACTTCAGAGAAAATTTGTCGTAACCATGGAAAT
GGATGAAAAAAGGGTAGGGGTTAGCATTAAATAAAAATGGCAGTAAAAAT
GGCAGTAGTGCCATCTCCTGGACTATCTACAAATTCACTGCTTcctaaga
aaatttctacagtTTCCTTGGCTCTTGATAATGACCAATTAATTAGGTCA
GACCCCTAACCGTTGCTTCTCTACTTTGTATTATTTAACTTTCATATTTC
CTTCTtcacaaaattgattttgaaaacaaaagcaaaaatacAGTAGCCAG
CCCTAAGATTAGGAATGAAGAATTGAGAAAAGGGCTGTTTGAAGAAAACT
GGGACATGAGTGTGAAGCTGGATCAAGAGTCCTGatacaacaaaaacaaa
ccaaatgtGTCTTAACTCTGATATTTAAACatatatcaaaaacaaaataa
aaagctctaaaacagcatttATATCTAGAGgatttttttctcagtttttt
gggcctgggagtgatttttttgccaaaacgaggctaaaactttgaggAAG
GCTggggacttcaaaaatggttgggtTTGGCTGGAATTGGGCACACTTCA
CTTGTTCCTCGGTTGAaaatctgggggtgtttttccatttttcaaaaagt
tacaattTTACATTTGTAGTTGGTTAATACATTCagtgataaaataaaaa
aaatggatACTACACCCGAGAGAAGGAAAATGAAAGCTAAACATGGTGCC
AGCGGTGCATGGAAGCAAAGATTTCGACAGGTATGTAAATAAAGAAAAGG
TTTTTTCACCTCTATATCTAAATTCAGGatacacacccttgcaatgtcTG
AGACACTAATTTACTttagcaaaagaaaaaactagaaaattacataactt
tgtgaatcattgcagtggtgcatatcataagtGAAAGCAGGGGGGTGACT
TTGCTCACCTCCAAGCTACACACCTCTCTGTATTCAAAGCTCGTTTACAT
CCAGCAATGAAGACCACCTGCTAAGTAAGAATTGATGACTAGAGAAATCT
GTGATTTGGAGGTGATGGAGGAGGTCACCCTGTTCATGGTAAAACTATCG
ATTCTGTTAAGAAATCTGAAGAAAtagttttaaaggaaaaaacaGATTTC
TGAATAAAGCTCTATTAGTATTACGTAATTTGTGACTGATGATaactcaa
atattttttgagccaGTGATGTAAATCATCAAGTTTACAGAAATGTCTTC
AAAAATGAAGAGGGCATTAAATTTACTGTAAAATATCATCTAATCAGGGA
TGCATGGAAAGATTACGTAACAAACGTCACGATTTTGTCAACTCACTTCG
AAGCCAGAACGCTGGATCACCAGGATCGCCTTCTTCATCTCAAGAGTATG
TTAATCAAGTCATGTTGGAAGAATGGCAACAAATGAAACTTGAAAGTCCT
CTACTTAGTGGAAACAGCAGAGGCTTCAAAAGGAAAAATGTAAGGAGATA
ATGGCTCAAAAAACTTCATGAAAAATGGCTCACAATTCAGTACTTAAGAG
GATGATACGATTGCGATTTTGCATCATAGGCAAAAAGCTTTGCATTACGC
AGTTTACAATTTATACCCTCTAAAATACTCTAATATTTTTCCTCTAAAAT
CTACTCTCTAATAGCTATTCTCTTAATAATGACCCCTTCTTCATTAGGTT
CCCGCTTGTCTCAGGCTTAATTTAAACTGAGCTAGGATGCatttaaacat
tttcaacacaatatttttttcaggaatttgaAAGTGACGACGAAGAAGAT
TTCCCAGAAAGCATTGAAGAAGCTCTCGATTACTTTCAAGAAATACAAAG
AGAACTACTTAGAGAAGGTAACAACATCCTCGGACAGTGATAAATAAAAA
GCAATTTTCAAATTAGCTGTCAGTAAAATTCGGCAGCTAATATGAAAGGA
CTTTAGCAATGGTTAATAAGGGTGTAGCTTTTAGTGGTGTTATGCAAAAT
TCCTTTAACACAGACAAATGTATGAGGTCTAAGTACTGAATCCTCTGCCT
GGAGTACTATAAGAAATACCTTTATCATTAcaaatctttatatttttttg
cagAGGAGCGTATGTTAGCACAATATGAAGAACTGGCAAGCTTTGATGAC
CAATATATACATGATACAATCAATATGTTATCAACAACAGCAGTCATATG
CCCTGTTTGTCAAAAGTAAGGTTGagagttttttactttttcactttttt
cactcGAATAGACGCAGTAGAATGAGACCAGTTTTGAAAGTGTTTCCTCG
AGCTAGAATTTAANtcccggtggatttcccttttgtgccaagtattttgt
cactgattgtagtttTAACCATTAACACTTATTATTCATCAATTTAATAT
GAATTCTGGTAAACAAGTCcagattgtttttgttttattaacctgaaata
tatatttcttttttagaaataatttacTGCAAAACAAACACATCATATTC
TGTAAATGTGGCATTCGAGTTGATACGCAGGTATTCTATATACACAATTT
ATACTTAATCATAAAGCCTTATCAGTTTGCTTTGttggaaatcttttttg
ttataaaataGAGGTACCCACTTCCTCCTACCTTCTTAGTACCTTACCTC
TTGTTTCCTCTGGCTGGCTACTTAAATTGATTTATATGTCCTTGTAACCC
CTTGAGGTATTTTGTCGATTTCTCCTGACAAGACCAATCAGACCCAATAT
TTCgagaattgaaaaatcatacGATTTCTGCACGTGTTTCCAACAGTTTG
TTAAAAAACGTTCGTTTTCTATCCATATTTTTAGACTGATGCCATAGATT
TAGAATATGTACGAAATCAACTTCAAGAGTCTGTAAATGAGCACAGGTTT
GTTTTATCGTCAAATTTGACGAAAAGGTTTCAGTAATAGCTATGCTTAAA
ATTTTATGTAGTTACTGTTACATCTAGTATCACGAGGGCCAGGTTTTGTA
TCTTAAAAACAAACATTCATTATTTGTAAGCCTTGTACTTGATGCGTTGT
TTAAAGATTGTCCTTTTATTCCCATCTTCTATAGGGCTCTTCCGGAAATA
GTCCATGCCCCCTGTTGGGGATATCGAATATCCAGGGGGTTCAATGGTAT
CTATATATCCCGGGGGTAGGACTTTTATAAGAGGAAAAGGATATCCATGG
GGAACAAGACAAAATACCTGGATATCCAGGGGGTACAGGAAAAAATGCAT
ATGTATCCTCAACCCTTCTATCGGCTCTATCCACTTGGGCATCCAGAAGG
GTGATTCTATTTCAGATCGGATATCCAGGGGGAGGTGTATCTAGAAAAAT
GGATATCCTCGACAGGGGGAGGAGGAAATTTCTGAAAAAGCCCAGCAACA
TGGCTGTTATATTGAGACTTCTTGTCTGTTTTTATTTTAGCTCAGCCTGT
CAACATACACCATCTTTTCACGTCGCAGACCTGAGTGGAGTAGGAATCGA
AAACCTTGTGCTAAGCTGTCAGGTAATATTTTTTATGCACTGGAAAACTA
GCGCCTAGAGCCGATAGTCTTAACTAGTATTAACTGCTAGTTTCAATACG
TCACAAGAGCACCCCGATACATTCACCTGCTTTTTAACATTGCGTAGTCT
GTCTAATAGTAAACTAGATTTTTTCAATCTTTTTTAAGGTTTTCCGATCC
TCAATGGTATTTATGACTAAATGGGTTAATGACGCGCTTTTTAAAAATTC
AATTTTTTTGCACTATTTTTACATTATATTTGATTAGATTTTAAAGAAAA
ATTCACTCGCTTTCTTTAGGTATGCGATTGTTTATCGATTATCATTTGAT
TTGAATTGATTGGCTTATATCACAGCCTCGTTTTGATTTTGCGTTGCTAT
CGTTACATCACCGTTTTATAATAGTTAAgtgttttttaatttattttgta
tttatgtaaataaaaattgaaaaaatactgGAGCATTTTATATTACCCAA
GAAGTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013953	XLOC_013953	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000511	supercontig	sc0000511:36751..40756 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
92.8432	92.5993	243.529	246.467	14.8492	8.54134	11.0039	13.1308	11.2676	13.4899	12.6931	8.53749	8.01638	6.07786	6.73681	7.15452	15.3136	17.1519	6.38233	9.21039	13.838	10.8115	28.5591	26.6465	37.8001	30.5178	7.03017	2.78043	10.2973	10.7849

Blast

[Close]

BLAST of TCONS_00024825 vs. Swiss-Prot (Human)
Match: RIP (RPA-interacting protein OS=Homo sapiens GN=RPAIN PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 5.931e-23
Identity = 69/233 (29.61%), Postives = 118/233 (50.64%), Query Frame = 2

Query:  101 RKMKAKHGASGAWKQRFRQGCMERLRNKRHDFVNSLRSQNAGSPGSPSSSQEYVNQVMLEEWQQMKLESPLLSGNSRGFKRKNXXXXXXXXXXXXXXXXALDYFXXXXXXXXXXXXXXXXXYEELASFDDQYIHDTINMLSTTAVICPVCQKNNLLQNKHIIFCKCGIRVDTQTDAIDLEYVRNQLQESVNEHSSACQHTPSFHVADLSGVGIE---NLVLSCQVCDCLSIII 790
            R+   K   S  WK+ FRQ C+ER+RN R   +N  R   +  PG+ S +   V +VM EEW  ++                   E+  E+         +   +EIQ+EL+++E+ ++++YE+   FD++ +   +       +ICPVC K NL     ++ C+CG+ + + +  +  + +R  L+ S+NEHS+ C HTP F V      G E   +L++SC  CD  ++I+
Sbjct:    9 RRSLYKLVGSPPWKEAFRQRCLERMRNSRDRLLNRYRQAGSSGPGN-SQNSFLVQEVMEEEWNALQ-----------------SVENCPEDLAQLEELIDMAVLEEIQQELIKQEQSIISEYEKSLQFDEKCLSIMLAEWEANPLICPVCTKYNLRITSGVVVCQCGLSIPSHSSELTEQKLRACLEGSINEHSAHCPHTPEFSVTG----GTEEKSSLLMSCLACDTWAVIL 219

The following BLAST results are available for this feature:

BLAST of TCONS_00024825 vs. Swiss-Prot (Human)

BLAST of TCONS_00024825 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RIP	5.931e-23	29.61	RPA-interacting protein OS=Homo sapiens GN=RPAIN P...	[more]

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TCONS_00024825 (transcript) - C. hemisphaerica