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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024835 ID=TCONS_00024835|Name=TCONS_00024835|organism=Clytia hemisphaerica|type=transcript|length=1847bp
TCATATGGCGGGTTAAAACTGCACGCCCGCTCCCACTCGTCCCAGTCCTA
CGGACTCCGACTTGTAGCGTTTGAGTTCGGTCATTCAGTTCACTTCATCC
TCTCATTCAGTCAACACAAATATTTTGCTTTCTTGGTTAATCAGAAATAC
ATTGCTCTCATCTTCAACTTCCAACACGACGACGTCAACTGCATCTTCAA
TTATCAATTCTGCGTTTCTCCTATCGAACCCCACACACCAACACTCAAAA
AGTATGTCCACCACCGTGTCCCACCGTTGTTCCAGTTACGACCTCATCCG
ACATCCTGTTGAGTCAGCATTATTACGATCCAAAATGGTATCTCTAACTG
TGGTATTCCTTTTTCATCACAACGTCTGGACCTGAACGACTGTAAAATTT
ATATCTAACTCCACCCAAGATTATCCAGCAAATCCGCCTGGATCAACCAT
CACCGACGACGGGAAGAGGACGCGCGCACCAAGTCATTTCGATCAATCCT
AGTCCCAGCGGTTTTTCCTGGTTTTTCCACGCTACAGGTTTTTTAGCCCA
GGGATTAGGTCGTTTGGGATGCATCTTGAGCTCGATCAATAGGTGTTTGT
TAGTTTGCtcgttttgttttttcttttattgtttttcctttttgggtcgt
tttcttttttttccttccttttttttttcctcttttctcaTCGCTCCGTT
ACTCTCATAACAACGTCACACGGGAGGCTCCGGCTCTCGTTATAGGCtta
ggttttatttttttttcaactttttcttgatttccAACGTCACGGCCTCC
GGCTCTCGTTGTAggcttttgttctttttttcttttactcctTTCAACAA
CGTCACACGGGAGGCTCACACGGGAGGCTCCGGCTCTCGTTATAGGCTAA
GGtttccattttatttatttgattacgTCTCTTAGAACAGCGTGGAGACT
CCGGCTCTCGTTGTACTCTTTGGGGTTAAACAACATCACGGCTCCAGCTC
TCGTTATAGGCTAAGGTTTctcgtttttttttatctttttttctttgatt
actCCTCTTAGAACAGCGTGGAGACTCCGGCTCTCGTTGCACTCTTTGGG
GTTAAACAACATCACGGCTCCGCCTCTTGTTGTAAGGCTTAAGTTTTTTA
CTAGAACTAGAACCTTTAGTACTTACCATAAGGGCTAGAATTCTTTAGTA
CTTACAGTTTAAGGGCTAGAACATTTTAGTACTTACAGTTTAAGGGCTAG
AACCTTTTAGTATTTACAGCTTAAGGGGGGGTGCGGGTTACTACGTAAAC
CCCATCTAGTTCTATACATCAGATCAGATAGGCTCAGATCCACGGGAGGC
TCCGGCTCTCGCTGCGATCTTCACAACCGTCCGCGGTTATATCAGATAGG
CTCAGATCCACGGGAGGCTCCGGCTCTCGCTGCGGTCTTCACAACCGTCC
GCGGTTATAGGCTTTAAGTAGATTTATCTCTCGATGCATCCCCAAATGTC
ACGCCAAAACCAACACACTTTCTTACGTTTCATTTTATAGTCAAAATATC
TCATTTCACAATTATACATTTGTCTCCCGTTCATTGCTTCCCCTTGTTTA
TGTTTGGGGTATCTTATCACTATTTTCGGGTATTTCGACCATCATCAAAA
ACGCAGTTTTGGATTCCTCACTAGGCTAGGTTTATGATACTCTTCACTCA
ACAGTCACACTGATAAGGAATTAACaggcaactttgttgtcatccccaga
ccttttagacgaacgcggtccttacgattttgagatagaatattcgtcag
attgtatgttttcacccatccctttagagcttcagcgtggtgggcag Run BLAST on NCBI protein sequence of TCONS_00024835-protein >TCONS_00024835-protein ID=TCONS_00024835-protein|Name=TCONS_00024835-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
SYGGLKLHARSHSSQSYGLRLVAFEFGHSVHFILSFSQHKYFAFLVNQKY
IALIFNFQHDDVNCIFNYQFCVSPIEPHTPTLKKYVHHRVPPLFQLRPHP
TSC Run BLAST on NCBI transcript from alignment at sc0000511:214154..221452- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024835 ID=TCONS_00024835|Name=TCONS_00024835|organism=Clytia hemisphaerica|type=transcript|length=7299bp|location=Sequence derived from alignment at sc0000511:214154..221452- (Clytia hemisphaerica)
TCATATGGCGGGTTAAAACTGCACGCCCGCTCCCACTCGTCCCAGTCCTA
CGGACTCCGACTTGTAGCGTTTGAGTTCGGTCATTCAGTTCACTTCATCC
TCTCATTCAGTCAACACAAATATTTTGCTTTCTTGGTTAATCAGAAATAC
ATTGCTCTCATCTTCAACTTCCAACACGACGACGTCAACTGCATCTTCAA
TTATCAATTCTGCGTTTCTCCTATCGAACCCCACACACCAACACTCAAAA
AGTATGTCCACCACCGTGTCCCACCGTTGTTCCAGTTACGACCTCATCCG
ACATCCTGTTGAGTCAGCATTATTACGATCCAAAATGGTATCTCTAACTG
TGGTATTCCTTTTTCATCACAACGTCTGGACCTGAACGACTGTAAAATTT
ATATCTAACTCCACCCAAGATTATCCAGCAAATCCGCCTGGGTGAGCCTG
TTGTTTTTTATTATTTTACTGCCTGCACACTTCGGGAAGGCCCATTCGTC
GCCAGATTCGTTAATTTTCGATGGGGACATCAACTAATTGCCATAAAGAC
ATTGCGATTCCAGCATTTCTCTCCCCAATTCCAACTTGGCCTTGAGAATT
ACATGTCCCCTCCCCTTGATGATGGGGTGTCCTTTCTCCTGAACCTCTAT
TAGGTCTCCGCCACACTTAGCCAACAAAATGTCCGATTATTACCAGATAT
TCTCGATTTTCTCATTTGTATACGTAGCATGGGGGCAAGGCACAGTATAA
GACAAGGCATGTCATTTAGGAGAACGTACATTTGGACTGGTTTAGTTAAA
GTACCCCTCTTGTATTTGGTCCCCAAATCCTCCCCTCTCTGACAATGGTG
TGTCATACATCTCTTAAAATTCAATCAAGTCTCCCCCATCATACTGAGCA
GCCAACGAAATGCCTGATTATTATTAGATTTTTTGCCTTTCTCCTTCTTG
TACACGTCCAAAGCACATTATAACACTAGGCGTGTCATTCTAAAAGGGCG
TACATCGGGCTGGTTTTATTTGACTTTCGTCCTTGTAATATGGTCCTCAC
ATATCAACCCACTTAGTAGCTGTATCTCCATTTAGCGGTTTTTGTTTATC
TTTCTGTTTGTCAACCTGAATTGTTCCCCTGCCGGAGGTTACTTAGAACT
ATCGTAGATCTCTCCTCTGACACTGTCAGTGTTTTCATACTTTTGGGTGG
GTTATCTCATGTGTAAGTCCAATTTCATGTTCCACCCTCATCTGAGTTGC
ATCTAACCTAATGATTGGTCCTTATTTGGGTATTCCCGACAGGATTAGCA
AGTCAATGTCCTGCACTTTAAATAGGTTCCTCATTGTGCCTTCAAATCCT
TTTCTTGGCCAATTGTATATGGAGTTGATTTGCTTTGTGCTTCCCTTTCT
TTAACTATACAGAATTTCACTTTCAGAAGCTTTATCCCTCCTGCAATAGC
TCTTCAAACCCAATCACTATGTCAACCATCCCATCTAGCGTTTGTTTGGA
CCTTAGCATGTCTGGATTCTTGCTCCTTAGAACTATGACTCATTTCTTCC
TGATCTTTCAGTGCCTACTGACTTAATTTCTCTTTCCTTTGATGCTCTTG
AGGTTTAGGTGTCTTGCAGAAGGTCAATGGGCCCTTCTCCAGTAGGTCCT
TTGACTAAGCTGATCTTACTCACACTCCAGCATTCGAAGCTTTTGCTGTT
TACGCTTTTCTTAAAGCTGTCTTGAGTCAACATGAACAGATAATCCACTA
CAAATAGTTTTGTGTCAATTTTCTTTAATTAGGTCTGTGGTCTTCCCAAG
GCTCCCATTCGGCTACTCTTCTTTCTCTCTTACCTTTCGTTCTCACCTTT
TCCTTTGCTACATGTGCTCAGCTCTGATGACGTGTTTACTAGACCTTTCT
TTTTTTCAGCTTCAGCTACCCGCATTCAATTTGACTCTCCCAACTCGAAC
CATCATGCTGCCCCCATCAATTGTTCCTGTGTAGTTGATCTTATGTGTTC
TTCCTTTAGGTTTACCTCTAATTCCACCTTCCTGAACTTGCTCTTTACTC
TCTGTTCAAATAAATAACACGTTCCTTCTTCCTGGTCTGTCGCTCTCGTC
GGGTCTTTGATGGTATTCCACTGCACTTTGCCAATTATACAACTTTTGTC
GAGTTCCTGCACCTTCGTATATACTGGATGATATTCAATTTCAATCATCA
GTGCTGCGGGCAGCAGCTGGTTGCAGACAACTACTGGTCATTCTGCAACG
CTTAGTTTTTCACCTGTAAGGTTAAAATTTTAGGGTCATAGGCGTGTTGG
TTTCTCCCCAAACTTCTTTAACTAGCCATAGCTTTCACTAACTGCCACCC
GCTAATTAATACAATAATGCTTGTAAAAACTAATTAATGCTAATTAAGAC
TTTTTAATGCTTTATAGCAAAAGTCTGGAAATGATTTGGAATAGTTAGAA
TGATTCTTCTCAGCATTTTCTTTGAGATATCAATGAATAAGCTAACATAA
ATGAAACATATTTTTTTCTAAAAATGTGAATTACCTGAAAGGAAGAAATT
TTGGCGGGAATTTAATTTGGCGGAAGGCCGAAAAAGTTTTTTAGATAGAT
TTAATTTGGCGGATGGACGAAAAAACTAAATTTGGCGGGAATTTAATTTG
GCGTTTGCTGAAAATTTTATCCTTAAAATGGTGTAGAAACAGCAAAAAAA
ATGCAAAAACACCTTAAAAGAGATCATATTTTCAAAAAGTTTAATTTGCT
GGCGGGAATTTAATTTGGCGGATGGCGGAAAAAAATTTTTGGCGGGAACT
TAATTTGGCGGATTCTGGCCAAATCCGCCAAATCCGCCAAATTTTCTTTC
CGCCAATATTTCTTCCTTTAAGGTACTTTTTACAAAGAATAAACTACGAA
TCTTAAAACATTCATTAGGAAAAGTGTCCAGGTAGAATCAATTACAGACA
GTTACAGATACTAAACCAGTCAAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATACC
AGTAATCTAGAAGCTGTAACAGCGTTGTGTAAAGGATGGAAGATGATAGG
AAGTAACGTGGTAATAGTATCAGTAACGAGGCAATATTGATGAGCAGGAA
GCAGGTATTAACAGGAAATAGCGTACATTCAGGACTTTTTCCAACGGCAT
CATATGGGATCTCATGGACAAAATTGTTTATATTAAAAAGATATGCCAGT
TATCTAGCAGTTGTAACAGCAATATCGTGTAGAAGGATGGGAAATCATGA
CGTAACGTGGTAATAGTAGCAGTAACGAGGTAATATTGCGTTGTCAAGGT
AAACGAATCCTCATTCATAAAAAGCTTAAAGGGAAAATAAGAAACATGAA
ATTAGATGATATATGAATATATACTGAAATTTCCTCAAAAATAGTTCACC
AAAAGTTTCTTTCAATCTTTGATAATAATTTCCCAAATAGTGCCTGGTGA
GTATCAAAAAGAACACAGGTTAAATATAAAAGATTAATAAAACCAAGTCT
AAAAGTACAGAAAGAAAAAAATATTTGTATATACTTATACTGTCGAAGTA
CCATAACACAGCACAGGATCTTAAAGCACTCTTGTTGGTTGGGAGTAGAG
TATGTTGAATGTCGATTGTCGAATAAATTTAGTTACAGTGGAATTTCGTT
GCCAATTCAACCACCAGCAATAATTTTCAATATTTAATCATTGTTCTACT
ATTATTATTTTAATCATTGTTCATTATTATTGCATTGGGGACAAACTGTT
TGGGTCGAAAAATGAATCAATCTCCTGAATGTCTAAGACAGGAGACAGAT
TGTAATTTGACTGTCAGCAAATTCACTGATTGGTATATGTATATATCTTG
TTGGTTTAATCCGAAAGTCAAAAGTAAATGCGTATACTGGTATAAGTATT
TTGACTGGAATTCCATTTTGACTGCAGGAGGAGAGAGCTTGAATTTAAAA
AAACTTCCAGAAACTTCTCCATTCGATTTCCTGCATGTTGACCAATCGGG
CAAAATTCTACAAGCGGAATAGAATCTAGTGTCGAAAGCTAAGTAAAATG
CCCGCGGCGCCTGCTATTATAAAGAAAAAGTTTTTAGGCTAGCAGCTGCC
GTCCCGGAAAAAAAACTGAACATTTACGGAAGAGACTCATTACGGGTAGG
CTTGCGCGACAAAACAAAACAAAACAAAACGCGCAAGAATTCGAGATTCC
AGTCCAATATCTATGCGTGAAACTATAAGTGCCTCCTCGTCGCTGCGCTC
CTGCGGGGGCAATGATTTAATTCACTTCAGTTGTTCCTTTTTATTTGTCT
TATTTATTCGTTTACTTAGTTATTTTTTTTCTTTCAAAATAGGTGTTAAG
CTAATCTAATCAGTTCAGCTTGGGAAGGGGGCCCTATCCCTCGAATTCTC
CTCTCCAATAATTCTCCTTCCAACCAACAGAAATTTCCTCATTCGGGGCA
ATGGTCATGGTCTGCATGATTAATGTTCGCAAACTGTCCCTTCTGCAAGC
GAGCCCCCATTCGACTACCCAGCTACCTGTGCTTTTTAATGCGAGTTATC
TGCATCTCACCCCTGGTTACAATCACCCCTTTTTTCTTCAGTGCCCAAAG
GAAGATTCTGATTTTCAGCCGTCATCGGCAGCAGCAGAGCTTCAATAGGT
GGAGGCACCACCTTCTTAGCAATTTTGGTGTTACCTCTGAGTCCATTTAA
ACCCCTTTCACAGACTGGACGGCATTATTAAGTGGCCAAGCGGTTCATGG
TAGTCCTCAATGTTAACCTTTTGATTTTAGCCAGACTGTTTTTCCCAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATTTCA
CAATTATACATTTGTCTCCCTTTCATTGCTTCCCCTTGTTTATGTTTAGG
GTATCTTATCACTATTTTCGGGTATTTCGACCATCATCAAAAACGCATTT
TTGGATTCCTCACTAGGCTAGGTTTATGATACTCTTCACTCAACAGTCAC
ACTGATAAGGAATTAATTAGAGCTAAAAGTTAGCTCATGTTAATTCCGCA
ATCAGCAAATCATACACCCGGCATCATATGGCGGGTTAAAACTGCACGCC
CGCTCCCACTCGTCCCAGTCCCACGGACTCCGACTTGTAGCGTTTGAGTT
CGGTCATTCAGTTCACTTCATCCTCTCATTCAGTCAACACAAATATTTTG
CTTCCCACCCTCCCTGATACCCTTATTTAATCATATGCGCCTTTTACTTG
TACCTATTTCCTTTCGCTGTTTCTTTTCTCTTCTATTTTTCAGATCAACC
ATCACCGACGACGGGAAGAGGACGCGCGCACCAAGTCATTTCGATCAATC
CTAGTCCCAGCGGTTTTTCCTGGTTTTTCCACGCTACAGGTTTTTTAGCC
CAGGGATTAGGTCGTTTGGGATGCATCTTGAGCTCGATCAATAGGTGTTT
GTTAGTTTGCTCGTTTTGTTTTTTCTTTTATTGTTTTTCCTTTTTGGGTC
GTTTTCTTTTTTTTCCTTCCTTTTTTTTTTCCTCTTTTCTCATCGCTCCG
TTACTCTCATAACAACGTCACACGGGAGGCTCCGGCTCTCGTTATAGGCT
TAGGTTTTATTTTTTTTTCAACTTTTTCTTGATTTCCAACGTCACGGCCT
CCGGCTCTCGTTGTAGGCTTTTGTTCTTTTTTTCTTTTACTCCTTTCAAC
AACGTCACACGGGAGGCTCACACGGGAGGCTCCGGCTCTCGTTATAGGCT
AAGGTTTCCATTTTATTTATTTGATTACGTCTCTTAGAACAGCGTGGAGA
CTCCGGCTCTCGTTGTACTCTTTGGGGTTAAACAACATCACGGCTCCAGC
TCTCGTTATAGGCTAAGGTTTCTCGTTTTTTTTTATCTTTTTTTCTTTGA
TTACTCCTCTTAGAACAGCGTGGAGACTCCGGCTCTCGTTGCACTCTTTG
GGGTTAAACAACATCACGGCTCCGCCTCTTGTTGTAAGGCTTAAGTTTTT
TACTAGAACTAGAACCTTTAGTACTTACCATAAGGGCTAGAATTCTTTAG
TACTTACAGTTTAAGGGCTAGAACATTTTAGTACTTACAGTTTAAGGGCT
AGAACCTTTTAGTATTTACAGCTTAAGGGGGGGTGCGGGTTACTACGTAA
ACCCCATCTAGTTCTATACATCAGATCAGATAGGCTCAGATCCACGGGAG
GCTCCGGCTCTCGCTGCGATCTTCACAACCGTCCGCGGTTATATCAGATA
GGCTCAGATCCACGGGAGGCTCCGGCTCTCGCTGCGGTCTTCACAACCGT
CCGCGGTTATAGGCTTTAAGTAGATTTATCTCTCGATGCATCCCCAAATG
TCACGCCAAAACCAACACACTTTCTTACGTTTCATTTTATAGTCAAAATA
TCTCATTTCACAATTATACATTTGTCTCCCGTTCATTGCTTCCCCTTGTT
TATGTTTGGGGTATCTTATCACTATTTTCGGGTATTTCGACCATCATCAA
AAACGCAGTTTTGGATTCCTCACTAGGCTAGGTTTATGATACTCTTCACT
CAACAGTCACACTGATAAGGAATTAACAGGCAACTTTGTTGTCATCCCCA
GACCTTTTAGACGAACGCGGTCCTTACGATTTTGAGATAGAATATTCGTC
AGATTGTATGTTTTCACCCATCCCTTTAGAGCTTCAGCGTGGTGGGCAG Coding sequence (CDS) from alignment at sc0000511:214154..221452- >TCONS_00024835 ID=TCONS_00024835|Name=TCONS_00024835|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at sc0000511:214154..221452- (Clytia hemisphaerica)
TCATATGGCGGGTTAAAACTGCACGCCCGCTCCCACTCGTCCCAGTCCTA
CGGACTCCGACTTGTAGCGTTTGAGTTCGGTCATTCAGTTCACTTCATCC
TCTCATTCAGTCAACACAAATATTTTGCTTTCTTGGTTAATCAGAAATAC
ATTGCTCTCATCTTCAACTTCCAACACGACGACGTCAACTGCATCTTCAA
TTATCAATTCTGCGTTTCTCCTATCGAACCCCACACACCAACACTCAAAA
AGTATGTCCACCACCGTGTCCCACCGTTGTTCCAGTTACGACCTCATCCG
ACATCCTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024835-exon-sc0000511-1575043694:221012..221452 | TCONS_00024835-exon-sc0000511-1575043694:221012..221452 | Clytia hemisphaerica | exon |
| TCONS_00024835-exon-sc0000511-1575043694:214154..215559 | TCONS_00024835-exon-sc0000511-1575043694:214154..215559 | Clytia hemisphaerica | exon |
| TCONS_00024835-exon-sc0000511-1510915933:221012..221452 | TCONS_00024835-exon-sc0000511-1510915933:221012..221452 | Clytia hemisphaerica | exon |
| TCONS_00024835-exon-sc0000511-1510915933:214154..215559 | TCONS_00024835-exon-sc0000511-1510915933:214154..215559 | Clytia hemisphaerica | exon |
| TCONS_00024835-exon-sc0000511-1491911889:221012..221452 | TCONS_00024835-exon-sc0000511-1491911889:221012..221452 | Clytia hemisphaerica | exon |
| TCONS_00024835-exon-sc0000511-1491911889:214154..215559 | TCONS_00024835-exon-sc0000511-1491911889:214154..215559 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000511 | supercontig | sc0000511:214154..221452 - |
Blast
The following BLAST results are available for this feature:
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