|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024841 ID=TCONS_00024841|Name=TCONS_00024841|organism=Clytia hemisphaerica|type=transcript|length=2070bp
gttttctgaaaatataATATTTACAAGCAGCAAGTTGATGTTGTCTTCGT
CTGCTTTTTAATATGCTTCTTTTGTGTCTGCCCGCGCCCTCCACGCCCAC
CACATTGTTTAAACATTTTCCTTGTTGATTTTCGGACATGCTTCAAAGTA
GTCAAAAAGTTAATAGCTCGAAACAAAGAGCTGGACAAAATACCAAGAAC
ACTTAAATCTCTTAAGATGTGGGTTGTTTCACAATTCCTATTCGGTGAAT
TTAGAAATATAATGATCACCAGAGTCGGTAAATACGTTACGATGAAGACC
AGTAACATTTTCAAGAATGCTAGAGTcacttttctctcttttttactTTG
TTTCATTCTCATGCTTGCAGTTGAGCTCGAGGTTCGTTGGAAAGGTAAAG
CTAAGATTGCAATATTTGTTAACGATGTTGAGCGCTTTCTTTTACGTTTG
TCTTTGCCTGTTTCCGcgtttgattttgatgtttcaaATGCTGTTTTTTC
AATACGGGCGATTTCTATTGGGTCAGCTTTTGAGAGTCCGTTTTTTAATT
GACGTCGCTTTAATGTCAAATCGGCGTCGTCGACTTTATCATCAACGGAT
TCCGTCATTGCCGTACTTGACGTTTGACTCTCATTAGAGAGTGTCGACGT
TGCTCGCCGTTTGCACGGTACGGAAAGACAACGCTTCCGTCTAGGTTTTC
CTGAATCTGTTTCCCCGTCTCCTGGCTCCTTCGACGCCATATTTTCGTCT
TTCTCAACCGTCGTGACGCCTTCAGATAACGCCGTGTCATTGGTCAAGCC
TGATAAATTCGTCATCGAGCTTGTAAAAGATCCAGACATTTTATTCCGTG
TATATGGAGCCTTAAATTTAATCCTGTAGATAACAGTCAATAAAACTAAC
GATACAACAGCAATCGAATTGGTGCatgagaaaaaaataacaagttCGAT
CATGAAGCCGACAATATAATATGGTAGGAATATACAGACACTGATTGGCC
AGCTTGCAAGCAGAATCGCCATTTGTGTGCATTTAGAAAACTGAAAATGG
GGCGTCAGCAACGCTAAGATGCGCTCCAAACTCAAAATAGCCATACTGAC
TAAAGCGACCCCGTCAGTAACGAATATCAATACGTGAACAAACGGTACGT
CAATCTCCTCATGATCCGAACCAACGCCGTACGTTTCACGCAAATGCCAA
ACGAACGCTGAGCCGTCTGCGAATAAACCTTTCATCAGGTCCGCAATAGC
AATATTGATGATAATTTTGTAGAAGAAGAGTTTGTACTTTGCTTTGTTTG
AAATGACATTTTTGGTAAGGCATAATAAGATCATACCGTTTAGCGGAACA
GTGAATAAGAACAGAAGTCCGGATGAAGCAGCGGAAAATATGGATAAAGC
TGTAACGTTATGTGTGGAACCGCATTTCTCGTCGAAAACCATATTTTTCG
TTGAATTTTAAGTCTTCTCCTGAACGTATCTAAAATTAATCCTTCATGTC
TATGTTTTTATGTTTGGAGGAATGAACCCTAAAATTGCTAAATACAAGCT
TTTCCAGCACAgttacaattttctttttgttctgCACTTTTGAGTTGATC
CAAGCTTTTTGTCGGAGGTAGAAAAATCCGATCCAATGTCGTTGATTCCC
TATTGTTATCGCTTAGAGTTGACTGCTATCTTCTGGTAAATTGTTCAGTT
TATAACAGAGTTTGAAATCCACAGCTCGAAACCCAAACCAACAATAAAGA
ATCCTCTGCTCGTATTATATGCGTGCCCTCCGTGTATAAACCTGCTGTTG
GCCGTTGAAATTTGCCTCAACTGAATTTAATTTCGTGTTGTTCTCAAGCC
ATACatgcaaaacaataaaaaacaatctaCAGCAGTAGCTTTTGTTTTTT
GTACTTTcaccaaaaaagattttatccTTTCATTTATTGCAGGTAAAGGT
TCTCCTTTTGCGAATTCTCTCAGTGGTACTGTACAAACAAATTTGCTATT
AATTTTCCGTCAGCAGTAAAGTGCTACCTTCTTTACAGATTTTAAGTATC
TATCATGTTTTTGTTGGGAA Run BLAST on NCBI protein sequence of TCONS_00024841-protein >TCONS_00024841-protein ID=TCONS_00024841-protein|Name=TCONS_00024841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
MVFDEKCGSTHNVTALSIFSAASSGLLFLFTVPLNGMILLCLTKNVISNK
AKYKLFFYKIIINIAIADLMKGLFADGSAFVWHLRETYGVGSDHEEIDVP
FVHVLIFVTDGVALVSMAILSLERILALLTPHFQFSKCTQMAILLASWPI
SVCIFLPYYIVGFMIELVIFFSCTNSIAVVSLVLLTVIYRIKFKAPYTRN
KMSGSFTSSMTNLSGLTNDTALSEGVTTVEKDENMASKEPGDGETDSGKP
RRKRCLSVPCKRRATSTLSNESQTSSTAMTESVDDKVDDADLTLKRRQLK
NGLSKADPIEIARIEKTAFETSKSNAETGKDKRKRKRSTSLTNIAILALP
FQRTSSSTASMRMKQSKKERKVTLAFLKMLLVFIVTYLPTLVIIIFLNSP
NRNCETTHILRDLSVLGILSSSLFRAINFLTTLKHVRKSTRKMFKQCGGR
GGRGQTQKKHIKKQTKTTSTCCL Run BLAST on NCBI transcript from alignment at sc0000511:83835..85904 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024841 ID=TCONS_00024841|Name=TCONS_00024841|organism=Clytia hemisphaerica|type=transcript|length=2070bp|location=Sequence derived from alignment at sc0000511:83835..85904 (Clytia hemisphaerica)
TTCCCAACAAAAACATGATAGATACTTAAAATCTGTAAAGAAGGTAGCAC
TTTACTGCTGACGGAAAATTAATAGCAAATTTGTTTGTACAGTACCACTG
AGAGAATTCGCAAAAGGAGAACCTTTACCTGCAATAAATGAAAggataaa
atcttttttggtgAAAGTACAAAAAACAAAAGCTACTGCTGtagattgtt
ttttattgttttgcatGTATGGCTTGAGAACAACACGAAATTAAATTCAG
TTGAGGCAAATTTCAACGGCCAACAGCAGGTTTATACACGGAGGGCACGC
ATATAATACGAGCAGAGGATTCTTTATTGTTGGTTTGGGTTTCGAGCTGT
GGATTTCAAACTCTGTTATAAACTGAACAATTTACCAGAAGATAGCAGTC
AACTCTAAGCGATAACAATAGGGAATCAACGACATTGGATCGGATTTTTC
TACCTCCGACAAAAAGCTTGGATCAACTCAAAAGTGcagaacaaaaagaa
aattgtaacTGTGCTGGAAAAGCTTGTATTTAGCAATTTTAGGGTTCATT
CCTCCAAACATAAAAACATAGACATGAAGGATTAATTTTAGATACGTTCA
GGAGAAGACTTAAAATTCAACGAAAAATATGGTTTTCGACGAGAAATGCG
GTTCCACACATAACGTTACAGCTTTATCCATATTTTCCGCTGCTTCATCC
GGACTTCTGTTCTTATTCACTGTTCCGCTAAACGGTATGATCTTATTATG
CCTTACCAAAAATGTCATTTCAAACAAAGCAAAGTACAAACTCTTCTTCT
ACAAAATTATCATCAATATTGCTATTGCGGACCTGATGAAAGGTTTATTC
GCAGACGGCTCAGCGTTCGTTTGGCATTTGCGTGAAACGTACGGCGTTGG
TTCGGATCATGAGGAGATTGACGTACCGTTTGTTCACGTATTGATATTCG
TTACTGACGGGGTCGCTTTAGTCAGTATGGCTATTTTGAGTTTGGAGCGC
ATCTTAGCGTTGCTGACGCCCCATTTTCAGTTTTCTAAATGCACACAAAT
GGCGATTCTGCTTGCAAGCTGGCCAATCAGTGTCTGTATATTCCTACCAT
ATTATATTGTCGGCTTCATGATCGaacttgttatttttttctcatGCACC
AATTCGATTGCTGTTGTATCGTTAGTTTTATTGACTGTTATCTACAGGAT
TAAATTTAAGGCTCCATATACACGGAATAAAATGTCTGGATCTTTTACAA
GCTCGATGACGAATTTATCAGGCTTGACCAATGACACGGCGTTATCTGAA
GGCGTCACGACGGTTGAGAAAGACGAAAATATGGCGTCGAAGGAGCCAGG
AGACGGGGAAACAGATTCAGGAAAACCTAGACGGAAGCGTTGTCTTTCCG
TACCGTGCAAACGGCGAGCAACGTCGACACTCTCTAATGAGAGTCAAACG
TCAAGTACGGCAATGACGGAATCCGTTGATGATAAAGTCGACGACGCCGA
TTTGACATTAAAGCGACGTCAATTAAAAAACGGACTCTCAAAAGCTGACC
CAATAGAAATCGCCCGTATTGAAAAAACAGCATttgaaacatcaaaatca
aacgCGGAAACAGGCAAAGACAAACGTAAAAGAAAGCGCTCAACATCGTT
AACAAATATTGCAATCTTAGCTTTACCTTTCCAACGAACCTCGAGCTCAA
CTGCAAGCATGAGAATGAAACAAagtaaaaaagagagaaaagtgACTCTA
GCATTCTTGAAAATGTTACTGGTCTTCATCGTAACGTATTTACCGACTCT
GGTGATCATTATATTTCTAAATTCACCGAATAGGAATTGTGAAACAACCC
ACATCTTAAGAGATTTAAGTGTTCTTGGTATTTTGTCCAGCTCTTTGTTT
CGAGCTATTAACTTTTTGACTACTTTGAAGCATGTCCGAAAATCAACAAG
GAAAATGTTTAAACAATGTGGTGGGCGTGGAGGGCGCGGGCAGACACAAA
AGAAGCATATTAAAAAGCAGACGAAGACAACATCAACTTGCTGCTTGTAA
ATATtatattttcagaaaac Coding sequence (CDS) from alignment at sc0000511:83835..85904 >TCONS_00024841 ID=TCONS_00024841|Name=TCONS_00024841|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0000511:83835..85904 (Clytia hemisphaerica)
ATGGTTTTCGACGAGAAATGCGGTTCCACACATAACGTTACAGCTTTATC
CATATTTTCCGCTGCTTCATCCGGACTTCTGTTCTTATTCACTGTTCCGC
TAAACGGTATGATCTTATTATGCCTTACCAAAAATGTCATTTCAAACAAA
GCAAAGTACAAACTCTTCTTCTACAAAATTATCATCAATATTGCTATTGC
GGACCTGATGAAAGGTTTATTCGCAGACGGCTCAGCGTTCGTTTGGCATT
TGCGTGAAACGTACGGCGTTGGTTCGGATCATGAGGAGATTGACGTACCG
TTTGTTCACGTATTGATATTCGTTACTGACGGGGTCGCTTTAGTCAGTAT
GGCTATTTTGAGTTTGGAGCGCATCTTAGCGTTGCTGACGCCCCATTTTC
AGTTTTCTAAATGCACACAAATGGCGATTCTGCTTGCAAGCTGGCCAATC
AGTGTCTGTATATTCCTACCATATTATATTGTCGGCTTCATGATCGaact
tgttatttttttctcatGCACCAATTCGATTGCTGTTGTATCGTTAGTTT
TATTGACTGTTATCTACAGGATTAAATTTAAGGCTCCATATACACGGAAT
AAAATGTCTGGATCTTTTACAAGCTCGATGACGAATTTATCAGGCTTGAC
CAATGACACGGCGTTATCTGAAGGCGTCACGACGGTTGAGAAAGACGAAA
ATATGGCGTCGAAGGAGCCAGGAGACGGGGAAACAGATTCAGGAAAACCT
AGACGGAAGCGTTGTCTTTCCGTACCGTGCAAACGGCGAGCAACGTCGAC
ACTCTCTAATGAGAGTCAAACGTCAAGTACGGCAATGACGGAATCCGTTG
ATGATAAAGTCGACGACGCCGATTTGACATTAAAGCGACGTCAATTAAAA
AACGGACTCTCAAAAGCTGACCCAATAGAAATCGCCCGTATTGAAAAAAC
AGCATttgaaacatcaaaatcaaacgCGGAAACAGGCAAAGACAAACGTA
AAAGAAAGCGCTCAACATCGTTAACAAATATTGCAATCTTAGCTTTACCT
TTCCAACGAACCTCGAGCTCAACTGCAAGCATGAGAATGAAACAAagtaa
aaaagagagaaaagtgACTCTAGCATTCTTGAAAATGTTACTGGTCTTCA
TCGTAACGTATTTACCGACTCTGGTGATCATTATATTTCTAAATTCACCG
AATAGGAATTGTGAAACAACCCACATCTTAAGAGATTTAAGTGTTCTTGG
TATTTTGTCCAGCTCTTTGTTTCGAGCTATTAACTTTTTGACTACTTTGA
AGCATGTCCGAAAATCAACAAGGAAAATGTTTAAACAATGTGGTGGGCGT
GGAGGGCGCGGGCAGACACAAAAGAAGCATATTAAAAAGCAGACGAAGAC
AACATCAACTTGCTGCTTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024841-exon-sc0000511-1491911889:83835..85904 | TCONS_00024841-exon-sc0000511-1491911889:83835..85904 | Clytia hemisphaerica | exon |
| TCONS_00024841-exon-sc0000511-1510915933:83835..85904 | TCONS_00024841-exon-sc0000511-1510915933:83835..85904 | Clytia hemisphaerica | exon |
| TCONS_00024841-exon-sc0000511-1575043694:83835..85904 | TCONS_00024841-exon-sc0000511-1575043694:83835..85904 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000511 | supercontig | sc0000511:83835..85904 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
|
