|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024870 ID=TCONS_00024870|Name=TCONS_00024870|organism=Clytia hemisphaerica|type=transcript|length=1492bp
CGAACTAGTAAGAcatctttcttttgtttgactTTGATGACTCTTTCCTT
GTCATGTTAAGATTTATACACGTCATTCCTCTCTAGGGGTTTGGGTTCGA
CATTTAATTAATTTCTCGCCACAGATCCTTATCGTagattttctatttat
aaaaaaagtagttGAATATATGAAAGGAAAAGTTACTTAGTATAAAGCTC
AAATTTCTCCTTGTAACATGAAGCCCGGCTTTATCTTTTCATTTTCGTTC
CGTAAGGCTCtttgttttgtcttttgtttgaaaGGAAAGCAAAGTAGATT
GTGTGACATGATTAATATCACAGAACTGATTAAGCCCCCTATCTTTTTAA
TAATAAATGTCGTTTGGTCGTTCTTTCGCTCGCCTTGTGGACGGAGAAGG
AAAAAAAAGCGATATTCTCAATAACAAACAAAGACTGATCAAGGAGAGAG
TGTTTGTATGAAAGCAAACTATTTTGCATGGAAATGGTTGAGATGGTGGA
TAATACAGCTCAATTAGCTGACGATTCCGAAACGAAAGCACCACGATGTG
CAAGATGTCGAAATCATGGCGTCATCTCACAACTAAAAGGTCACAAAAGA
GTTTGCCCCTGGCGCGAATGTTCTTGTTCCAAATGTATTTTGATTTACGA
ACGACAGCGTTTGATGGCCGCGCAAATCGCCATACGGAGAGAAGATGAGG
AATCGGACACCAGGCTAAAATTTCATATACAATCACCACAGTCTAGTGAC
ATGCCTTCTCACGATTCAATGAAATTACAATcgaacaaaaataaagaaaG
GAAACGTACACACGAAGAGGACAAAGAGACGTGCCAAGAACGTTCCACAA
AATATTCGAAGGATTACCAGAGATCTTCTTCATCCTCAACCAATCACAAG
ACctctttcaaacaaaaacaacaagatGCCATGAACAGTGAAACGCTCAT
CCAAATGTTCCCCGAAATGAAACGAGATATCCTCCTTCTCATTCTCAAAG
GGTGTGATTATGACGTCAGGGGCGCTattgaacttttgaaaaattgtcgc
CCACTTCCGCCCTCTCCTTATATGTTACCATTGACAACAACGCCTTCAAG
AGAAGTTTACTATGAGAGGAATTGTGTTGAGTCTCATTGTAGAGCGTACA
AACCACCTCATTGATGACTGTCGTGACTTTATCATGCTCAACAAGACCCA
CAATAATACAACCCGTTCGATTGGTTGTGGGAGTAgagaaatttcttatt
ttcatctctaAACATAAGAAATGAGATGAAATAAAACTCAATCCTGCCCT
aaagaatttttcattaattacaATTCCAATGTTGCGGCAACGAAACTCTT
TTAATTCCTTGATTGACCAATGAGTAATTTCAAGATTTATATCATGTGTT
TTTGGGTTAATTTTGTATTGCGTATTAATGTTGAGGGATGATCAAAACAT
CTTTACATAATTACATGTTAAATTATGCCTTTTCAAGATGAG Run BLAST on NCBI transcript from alignment at sc0000512:175364..177440+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024870 ID=TCONS_00024870|Name=TCONS_00024870|organism=Clytia hemisphaerica|type=transcript|length=2077bp|location=Sequence derived from alignment at sc0000512:175364..177440+ (Clytia hemisphaerica)
CGAACTAGTAAGAcatctttcttttgtttgactTTGATGACTCTTTCCTT
GTCATGTTAAGATTTATACACGTCATTCCTCTCTAGGGGTTTGGGTTCGA
CATTTAATTAATTTCTCGCCACAGATCCTTATCGTagattttctatttat
aaaaaaagtagttGAATATATGAAAGGAAAAGTTACTTAGTATAAAGCTC
AAATTTCTCCTTGTAACATGAAGCCCGGCTTTATCTTTTCATTTTCGTTC
CGTAAGGCTCtttgttttgtcttttgtttgaaaGGAAAGCAAAGTAGATT
GTGTGACATGATTAATATCACAGAACTGATTAAGCCCCCTATCTTTTTAA
TAATAAATGTCGTTTGGTCGTTCTTTCGCTCGCCTTGTGGACGGAGAAGG
AAAAAAAAGCGATATTCTCAATAACAAACAAAGACTGATCAAGGAGAGAG
TGTTTGTATGAAAGCAAACTATTTTGCATGGAAATGGTTGAGATGGTGGA
TAATACAGCTCAATTAGCTGACGATTCCGAAACGAAAGCACCACGATGTG
CAAGATGTCGAAATCATGGCGTCATCTCACAACTAAAAGGTCACAAAAGA
GTTTGCCCCTGGCGCGAATGTTCTTGTTCCAAATGTATTTTGATTTACGA
ACGACAGCGTTTGATGGCCGCGCAAATCGCCATACGGAGAGAAGATGAGG
AATCGGACACCAGGCTAAAATTTCATATACAATCACCACAGTCTAGTGAC
ATGCCTTCTCACGATTCAATGAAATTACAATcgaacaaaaataaagaaag
tgaGTTGATGGTTCTCATTTTCATTTACTGAAATTATTTCACCTTCTTCT
TTATCTAATGACGAAAAACTTCTGGAAGTCCTCACGAAGAAGAAACTTCC
CAAATTTGAAGTGATACCTCTAAAGTTATTTTAAAACTCCAAGTTATAAA
GGACAACTTTTTGCCTTGGGTCACTCAGGGTGAAGGATTGGGTGGATTGT
ATAGGTACAAAGAAAAAGTGATGTTGCTATTTAGAGTATTTATGTACCat
ggttttaaggttttatgaattttctttttgaatttgaccaCTCTAGAATG
TCCTAAATCAACCTCCGATTTTAAATAATCAGTCGATATTTCAGGACGAA
ATAGTCTCAACAGCATTATTTTTTGACAGACAcatattaatttatttatt
tggtTGACTTCAAACCAGAACATTTTAGGTGGGGTATGTGTGGattcttc
ttgtttttttcaATCAGACCATTTTCAAATAATCCAGTAGGTGATTCTTA
TCCAGTGGGGTGAAAAATTGAATCGTTCAACGTTTATTGGAAAGTTGATT
CAAATGGTGAAATCTATGGCTTTTTATTCTACAGGGAAACGTACACACGA
AGAGGACAAAGAGACGTGCCAAGAACGTTCCACAAAATATTCGAAGGATT
ACCAGAGATCTTCTTCATCCTCAACCAATCACAAGACctctttcaaacaa
aaacaacaagatGCCATGAACAGTGAAACGCTCATCCAAATGTTCCCCGA
AATGAAACGAGATATCCTCCTTCTCATTCTCAAAGGGTGTGATTATGACG
TCAGGGGCGCTattgaacttttgaaaaattgtcgcCCACTTCCGCCCTCT
CCTTATATGTTACCATTGACAACAACGCCTTCAAGAGAAGTTTACTATGA
GAGGAATTGTGTTGAGTCTCATTGTAGAGCGTACAAACCACCTCATTGAT
GACTGTCGTGACTTTATCATGCTCAACAAGACCCACAATAATACAACCCG
TTCGATTGGTTGTGGGAGTAgagaaatttcttattttcatctctaAACAT
AAGAAATGAGATGAAATAAAACTCAATCCTGCCCTaaagaatttttcatt
aattacaATTCCAATGTTGCGGCAACGAAACTCTTTTAATTCCTTGATTG
ACCAATGAGTAATTTCAAGATTTATATCATGTGTTTTTGGGTTAATTTTG
TATTGCGTATTAATGTTGAGGGATGATCAAAACATCTTTACATAATTACA
TGTTAAATTATGCCTTTTCAAGATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024870-exon-sc0000512-1491911889:175364..176162 | TCONS_00024870-exon-sc0000512-1491911889:175364..176162 | Clytia hemisphaerica | exon |
| TCONS_00024870-exon-sc0000512-1510915933:175364..176162 | TCONS_00024870-exon-sc0000512-1510915933:175364..176162 | Clytia hemisphaerica | exon |
| TCONS_00024870-exon-sc0000512-1575043694:175364..176162 | TCONS_00024870-exon-sc0000512-1575043694:175364..176162 | Clytia hemisphaerica | exon |
| TCONS_00024870-exon-sc0000512-1491911889:176748..177440 | TCONS_00024870-exon-sc0000512-1491911889:176748..177440 | Clytia hemisphaerica | exon |
| TCONS_00024870-exon-sc0000512-1510915933:176748..177440 | TCONS_00024870-exon-sc0000512-1510915933:176748..177440 | Clytia hemisphaerica | exon |
| TCONS_00024870-exon-sc0000512-1575043694:176748..177440 | TCONS_00024870-exon-sc0000512-1575043694:176748..177440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000512 | supercontig | sc0000512:175364..177440 + |
Blast
BLAST of TCONS_00024870 vs. Swiss-Prot (Human)
Match: DMRTA (Doublesex- and mab-3-related transcription factor A1 OS=Homo sapiens GN=DMRTA1 PE=2 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 2.211e-21 Identity = 41/62 (66.13%), Postives = 52/62 (83.87%), Query Frame = 1
Query: 535 KAPRCARCRNHGVISQLKGHKRVCPWRECSCSKCILIYERQRLMAAQIAIRRE--DEESDTR 714
+ P+CARCRNHGV+S LKGHKR C WR+C+C+KC LI ERQR+MAAQ+A+RR+ EES+ R
Sbjct: 93 RTPKCARCRNHGVVSALKGHKRFCRWRDCACAKCTLIAERQRVMAAQVALRRQQAQEESEAR 154
The following BLAST results are available for this feature:
|
