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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024904 ID=TCONS_00024904|Name=TCONS_00024904|organism=Clytia hemisphaerica|type=transcript|length=2030bp
aaaaaaaatgtcacactgaacataaataaaaaagtgctttactcatgtaa
aaattttagtaaaagTAAAAGTAGACTGAGTATCCCAGACTAATTTTCTA
AACTGcgtcaaaatttttatttatgtaCATGTTTCAATGTAACTATTCAA
TATAATGTTTTTAAACCTCCCTTTTTTATTTAACGATTTAAATTTAAGGT
CAGAGCTCTGATCTATCCTAAGGATGGGTTCATCGAAACTCAAAGCTTCA
GTGATACGAATGGTGCTACGGTCGAATTGCGCTTGGCCTGATAACCAACA
ACTTTTTGCTACAAATAGCCtaaactaaagtctatttcaaattagctggc
agtgttttttcaaacctcaataacttttgatagaatttgaattagttagc
agttttgtgctcgttaaaaagataatcctgAGTGGagtattatcaaaaaa
gaaagaaattcaaaaaatggaaaaacgaagatgaaaaatggagaagaaga
aaatcaacttctagtagaataatgctatgatcttcatttttgaatCAGAA
ACTcatcttagaacgtcataaatgtgaaaaaagatttaaaaaatatttat
tcaatcataaaatacaGCTTAAATCTTTGCCCTGGTTGACTTaaaaaagg
gctcttttttgttgtttttgatgatttttgaagtcaatcattgttaaact
ttggactatatctttcgatggaataaatttttttgaattttttttcttca
cattattgatgttctaagatcaaagaatcactcgtgtgaaaatgatTCTT
ATGGcaaaattattgaagaagttgattttcttcttctccattttcaatct
tcatttttcgatcttttttgattttttctttatgacGATAtcccactcct
gtttgtcttttcaacaagcacaaaatcgctacttaattcaaattctaaaa
GTTATCGaggttattgaggtttgaaaaaacactgccctgcactgccagct
aatttgaaatagactttagacACATCGCGGTTTTTTTCGACGCAGTGACG
TCTATTCCATTCTAGATTTAGAATGCCATGATTCTATTCGATCccgtcat
tttttcaaatttttagagccCAGGTTTTCTgactccaaacattcgatttt
ttgacgtcattttgaactttcgaagctcctgcagtagttGAAAGACttct
aattttctaaaattaaattaacAATACTTAAATAATGTAAATACAATTTG
GAAATAAATACTGGGTGAATAAATTATGTAATAAATACTAGAGCAAATAG
ACAATCAGCcaaaaaaccctaaaaaagtAGACCAAACGATAGACCTGCAA
AATACCTGAAAAGACCATGAAGATGAGAAACTGAAAAACCCTGTAAAAAA
CCTATATAAATACTATATTATCAAACGCCGCTCTTCGCACGTCACTCAAA
CAAGTATCGACGTCAAGATCTCCGTctaaaatcatcaaagtggaactTAT
CAAGAAACAGTATGAAAAATcctggtttttggtgaggtactcGCTACATA
CGCTACCACTCGACCACGCCCTCTTTTACAAGAGTTTCCAATCAACTGTT
ATTAAAATGGTATGAGTTAATCACACACAGCCCTCAACGCCagtttgaaa
actgaattaatGGGGCACATTTTCAGGTTAATTGGGTAACGGATAAATNT
AGTGTAAAGATGAGGGTGCAGTTAAACTGGGCTCGAAATGGAGTacaatt
ttgtaaaaagtgtttATCGATGGAATTAAATAACTTTCTGTGGCAAGCTC
AAAGTCAAATACTTTGTTGTCGTTAAGGTCTTCAATCCTTAATTTTTTAT
GCAACGTTCTCAATTGCAATGCAAAGAATTCATTTAGTATACCATTATGA
TAtgatttcatttcaaagaaagTGACAGGCTTGACAAGCCTTTCGAATGT
GAAAGTGACTTCTAATTTCCAACTGGTTGTGCTTGCTGCGTAGGTATCGA
TGACAACTGGATTATTACTGCATATGTATT Run BLAST on NCBI protein sequence of TCONS_00024904-protein >TCONS_00024904-protein ID=TCONS_00024904-protein|Name=TCONS_00024904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
YICSNNPVVIDTYAASTTSWKLEVTFTFERLVKPVTFFEMKSYHNGILNE
FFALQLRTLHKKLRIEDLNDNKVFDFELATESYLIPSINTFYKIVLHFEP
SLTAPSSLHXIYPLPN Run BLAST on NCBI transcript from alignment at sc0000512:61738..63767 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00024904 ID=TCONS_00024904|Name=TCONS_00024904|organism=Clytia hemisphaerica|type=transcript|length=2030bp|location=Sequence derived from alignment at sc0000512:61738..63767 (Clytia hemisphaerica)
AATACATATGCAGTAATAATCCAGTTGTCATCGATACCTACGCAGCAAGC
ACAACCAGTTGGAAATTAGAAGTCACTTTCACATTCGAAAGGCTTGTCAA
GCCTGTCActttctttgaaatgaaatcaTATCATAATGGTATACTAAATG
AATTCTTTGCATTGCAATTGAGAACGTTGCATAAAAAATTAAGGATTGAA
GACCTTAACGACAACAAAGTATTTGACTTTGAGCTTGCCACAGAAAGTTA
TTTAATTCCATCGATaaacactttttacaaaattgtACTCCATTTCGAGC
CCAGTTTAACTGCACCCTCATCTTTACACTANATTTATCCGTTACCCAAT
TAACCTGAAAATGTGCCCCattaattcagttttcaaactGGCGTTGAGGG
CTGTGTGTGATTAACTCATACCATTTTAATAACAGTTGATTGGAAACTCT
TGTAAAAGAGGGCGTGGTCGAGTGGTAGCGTATGTAGCgagtacctcacc
aaaaaccaggATTTTTCATACTGTTTCTTGATAagttccactttgatgat
tttagACGGAGATCTTGACGTCGATACTTGTTTGAGTGACGTGCGAAGAG
CGGCGTTTGATAATATAGTATTTATATAGGTTTTTTACAGGGTTTTTCAG
TTTCTCATCTTCATGGTCTTTTCAGGTATTTTGCAGGTCTATCGTTTGGT
CTacttttttagggttttttgGCTGATTGTCTATTTGCTCTAGTATTTAT
TACATAATTTATTCACCCAGTATTTATTTCCAAATTGTATTTACATTATT
TAAGTATTgttaatttaattttagaaaattagaaGTCTTTCaactactgc
aggagcttcgaaagttcaaaatgacgtcaaaaaatcgaatgtttggagtc
AGAAAACCTGggctctaaaaatttgaaaaaatgacggGATCGAATAGAAT
CATGGCATTCTAAATCTAGAATGGAATAGACGTCACTGCGTCGAAAAAAA
CCGCGATGTgtctaaagtctatttcaaattagctggcagtgcagggcagt
gttttttcaaacctcaataacctCGATAACttttagaatttgaattaagt
agcgattttgtgcttgttgaaaagacaaacaggagtgggaTATCgtcata
aagaaaaaatcaaaaaagatcgaaaaatgaagattgaaaatggagaagaa
gaaaatcaacttcttcaataattttgCCATAAGAatcattttcacacgag
tgattctttgatcttagaacatcaataatgtgaagaaaaaaaattcaaaa
aaatttattccatcgaaagatatagtccaaagtttaacaatgattgactt
caaaaatcatcaaaaacaacaaaaaagagcccttttttAAGTCAACCAGG
GCAAAGATTTAAGCtgtattttatgattgaataaatattttttaaatctt
ttttcacatttatgacgttctaagatgAGTTTCTGattcaaaaatgaaga
tcatagcattattctactagaagttgattttcttcttctccatttttcat
cttcgtttttccattttttgaatttctttcttttttgataatactCCACT
caggattatctttttaacgagcacaaaactgctaactaattcaaattcta
tcaaaagttattgaggtttgaaaaaacactgccagctaatttgaaataga
ctttagtttaGGCTATTTGTAGCAAAAAGTTGTTGGTTATCAGGCCAAGC
GCAATTCGACCGTAGCACCATTCGTATCACTGAAGCTTTGAGTTTCGATG
AACCCATCCTTAGGATAGATCAGAGCTCTGACCTTAAATTTAAATCGTTA
AATAAAAAAGGGAGGTTTAAAAACATTATATTGAATAGTTACATTGAAAC
ATGtacataaataaaaattttgacgCAGTTTAGAAAATTAGTCTGGGATA
CTCAGTCTACTTTTActtttactaaaatttttacatgagtaaagcacttt
tttatttatgttcagtgtgacatttttttt Coding sequence (CDS) from alignment at sc0000512:61738..63767 >TCONS_00024904 ID=TCONS_00024904|Name=TCONS_00024904|organism=Clytia hemisphaerica|type=CDS|length=351bp|location=Sequence derived from alignment at sc0000512:61738..63767 (Clytia hemisphaerica)
TACATATGCAGTAATAATCCAGTTGTCATCGATACCTACGCAGCAAGCAC
AACCAGTTGGAAATTAGAAGTCACTTTCACATTCGAAAGGCTTGTCAAGC
CTGTCActttctttgaaatgaaatcaTATCATAATGGTATACTAAATGAA
TTCTTTGCATTGCAATTGAGAACGTTGCATAAAAAATTAAGGATTGAAGA
CCTTAACGACAACAAAGTATTTGACTTTGAGCTTGCCACAGAAAGTTATT
TAATTCCATCGATaaacactttttacaaaattgtACTCCATTTCGAGCCC
AGTTTAACTGCACCCTCATCTTTACACTANATTTATCCGTTACCCAATTA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00024904-exon-sc0000512-1491911889:61738..63767 | TCONS_00024904-exon-sc0000512-1491911889:61738..63767 | Clytia hemisphaerica | exon |
| TCONS_00024904-exon-sc0000512-1510915933:61738..63767 | TCONS_00024904-exon-sc0000512-1510915933:61738..63767 | Clytia hemisphaerica | exon |
| TCONS_00024904-exon-sc0000512-1575043694:61738..63767 | TCONS_00024904-exon-sc0000512-1575043694:61738..63767 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000512 | supercontig | sc0000512:61738..63767 . |
Blast
The following BLAST results are available for this feature:
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