TCONS_00024908 (transcript) - C. hemisphaerica

Overview
NameTCONS_00024908
Unique NameTCONS_00024908
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00024908 ID=TCONS_00024908|Name=TCONS_00024908|organism=Clytia hemisphaerica|type=transcript|length=2264bp
tgaaaatacaggccccagatatcaacagtcccatgtttctaCCAacaacc
aatcgtcccaagttagagtacTTGACGGTAGTAGAGTAAGAGTTTGTGCG
TAAAAAGATATGatagtcaaaaaaaattgtacggTGCATGTGAAAGCTGC
GAGGCCGCCATGTTATACTTACCAACCTGAGTTTAGACCGCGTTTTTATA
AACTAACAGGAAAGCTTAACTTTTATTAGAAAGTAGATGAATCCGACGAG
CGCTTCGCCTTCCTTCTAGGATTAACAACTTCATCAAGTTGAAGGTAACT
TAACTCTGGCTACACACACCATATAAAAACCTTTTAACCGTTATATCAAT
CATTGGAAACCACGGTGTGGCCGTGCATAAATGCAAAAAGAAGCTTTTTT
CTTGCCCAACTAAAAAGCTTCCATTTTCTTCAAGAAGCTTCTGGCAAGAT
ATCGACTAAAAGCTAAAAGCTccatttactttcgttttgcTGTAATAAAC
AACATCACTCAACTTAACTCGAAAGACTGAAAAGTAGTAAACAAGCTATT
CAAAATGGTGAAAGAAACGAAGCTTTACGATATTCTTGGTGTGGCACCAG
AAGCAACTCAACCTGAAATTAAAAAGGCCTATCGAAAAATGGCCTTGAAA
TATCACCCAGACAAAAATCCTGATGAACCTGAGAAGTTTAAGGAGATTTC
TGCTGCATTTGAAGTTTTGAGTGATGAAAAGAAGAGAGAAATTTATGACA
AACATGGTGAACAAGCTCTCAAAGAAGGAGGTGGTGGTGAATATCATTCT
CCATTTGATATCTTTGATATGTTCTTTGGTGGTGGCCGTAGAAGACAACC
TGGAGAAAAAGCGAGGGGAAAAGACACTGTGCATCAACTTAAAGTTAGTC
TTGAAGAACTTTACAATGGAGCTAAACGACAACTTGCTGTTCAAAAAAAC
GTGATTTGTGATGCATGTAATGGGATTGGTGGTAAAGAAGGATCTGTACA
AAAGTGTGACAACTGTAATGGATCTGGTGTTGATGTGAAGTTGAGACAAA
TAGGTCCAGGAATGGTGCAACAAATCCAACAGCCATGCCGTGAATGTAAC
CAAACAGGTGAAAAAATCAAGGATAAAGATAGGTGTAAGAAATGTAACGG
AAAGAAAGTTCTCAGAGAGCGTAAAGTGTTGGATTGTCATATTGATCCTG
GCATGAAAGatggacaaaaaatcaaatttaggGAGGAAGGAGACCAAGCG
CCAGGAACTGAGCCAGGAGATATCATCATAGTTTTGGATGAAAAAGAACA
TGATCGCTTCAAGAGAAATGGGACTGATCTTCATTATAACATGAGCATTG
AATTAGCTGATGCACTGTGTGGTTTCACAAAATTAGTGAAAACGCTTGAT
AAAGATAATCGATATATCAAAGTTGTCTCTGCCCCAGGTGCTGTCATCCG
GCCAAACAAACCGAAATGTATTGATGGAGAAGGAATGCCTTACCCAAGTA
ATGAGTATGAGAAAGGAAGATTGattatttcttttgaaattgcaTTCCCT
GAAAATGGTTTCATAAAGCCACAGCAATGTGAAGCACTTGAAAAGCTCTT
ACCGCCCAGAGAAAAGCATGTACCTTCGGATATTGGGGAAGAGGTACATT
TGTGTGAAATGTCTGAGCTTCCTCATCAAGGGCGCTCAAATAGTTATTAT
GATGAGGATGAGGATGAACGTGGCCAAGGAGGAGTACAATGCCAGACATC
ATAAAATGATAGACTGTGTCTTAAAAATAATAGATTGTAGATAATTTTTA
TTGTGTTTTTATGAGTTCAATTGTATGTTTTTTGTTGGTTGACTTTAACT
TAAACTTGAACTTTTTCAAACAGATTTATCTACAATCAAGAACTTGATTT
GttattaaaataatttcaaatgtgATGAAAGAACCATTCCGATAATAATT
ACTTAATATCTATTATGTTAGTCTGGTTGAATTAGCTCTAAAAAGGGTAG
GGCCTTTTGATTAAAATAATATGTTGCTGAAATTTGACAGACGTGGATCC
AAGATCCACTATAAATAGCCTGCAGTTGATCAAGAAGCTTTGGGGCGTTT
TATTAAGACatcaattttctgaagaaaatgtttaaaaaatctcaacTATT
CTATCAGAAAGATCATGAAAAGTAGATACCAAAAATTATCGtcttttaaa
ttttgtcaattAGACCCCCTAAATCTGCCTTGTGGTGTCCTTGTGATGTC
ATAAGCTGCTCATT
Run BLAST on NCBI

protein sequence of TCONS_00024908-protein

>TCONS_00024908-protein ID=TCONS_00024908-protein|Name=TCONS_00024908-protein|organism=Clytia hemisphaerica|type=polypeptide|length=399bp
MVKETKLYDILGVAPEATQPEIKKAYRKMALKYHPDKNPDEPEKFKEISA
AFEVLSDEKKREIYDKHGEQALKEGGGGEYHSPFDIFDMFFGGGRRRQPG
EKARGKDTVHQLKVSLEELYNGAKRQLAVQKNVICDACNGIGGKEGSVQK
CDNCNGSGVDVKLRQIGPGMVQQIQQPCRECNQTGEKIKDKDRCKKCNGK
KVLRERKVLDCHIDPGMKDGQKIKFREEGDQAPGTEPGDIIIVLDEKEHD
RFKRNGTDLHYNMSIELADALCGFTKLVKTLDKDNRYIKVVSAPGAVIRP
NKPKCIDGEGMPYPSNEYEKGRLIISFEIAFPENGFIKPQQCEALEKLLP
PREKHVPSDIGEEVHLCEMSELPHQGRSNSYYDEDEDERGQGGVQCQTS
Run BLAST on NCBI

transcript from alignment at sc0000512:119482..121745

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00024908 ID=TCONS_00024908|Name=TCONS_00024908|organism=Clytia hemisphaerica|type=transcript|length=2264bp|location=Sequence derived from alignment at sc0000512:119482..121745 (Clytia hemisphaerica)
AATGAGCAGCTTATGACATCACAAGGACACCACAAGGCAGATTTAGGGGG
TCTaattgacaaaatttaaaagaCGATAATTTTTGGTATCTACTTTTCAT
GATCTTTCTGATAGAATAgttgagattttttaaacattttcttcagaaaa
ttgatGTCTTAATAAAACGCCCCAAAGCTTCTTGATCAACTGCAGGCTAT
TTATAGTGGATCTTGGATCCACGTCTGTCAAATTTCAGCAACATATTATT
TTAATCAAAAGGCCCTACCCTTTTTAGAGCTAATTCAACCAGACTAACAT
AATAGATATTAAGTAATTATTATCGGAATGGTTCTTTCATcacatttgaa
attattttaataaCAAATCAAGTTCTTGATTGTAGATAAATCTGTTTGAA
AAAGTTCAAGTTTAAGTTAAAGTCAACCAACAAAAAACATACAATTGAAC
TCATAAAAACACAATAAAAATTATCTACAATCTATTATTTTTAAGACACA
GTCTATCATTTTATGATGTCTGGCATTGTACTCCTCCTTGGCCACGTTCA
TCCTCATCCTCATCATAATAACTATTTGAGCGCCCTTGATGAGGAAGCTC
AGACATTTCACACAAATGTACCTCTTCCCCAATATCCGAAGGTACATGCT
TTTCTCTGGGCGGTAAGAGCTTTTCAAGTGCTTCACATTGCTGTGGCTTT
ATGAAACCATTTTCAGGGAAtgcaatttcaaaagaaataatCAATCTTCC
TTTCTCATACTCATTACTTGGGTAAGGCATTCCTTCTCCATCAATACATT
TCGGTTTGTTTGGCCGGATGACAGCACCTGGGGCAGAGACAACTTTGATA
TATCGATTATCTTTATCAAGCGTTTTCACTAATTTTGTGAAACCACACAG
TGCATCAGCTAATTCAATGCTCATGTTATAATGAAGATCAGTCCCATTTC
TCTTGAAGCGATCATGTTCTTTTTCATCCAAAACTATGATGATATCTCCT
GGCTCAGTTCCTGGCGCTTGGTCTCCTTCCTCcctaaatttgattttttg
tccatCTTTCATGCCAGGATCAATATGACAATCCAACACTTTACGCTCTC
TGAGAACTTTCTTTCCGTTACATTTCTTACACCTATCTTTATCCTTGATT
TTTTCACCTGTTTGGTTACATTCACGGCATGGCTGTTGGATTTGTTGCAC
CATTCCTGGACCTATTTGTCTCAACTTCACATCAACACCAGATCCATTAC
AGTTGTCACACTTTTGTACAGATCCTTCTTTACCACCAATCCCATTACAT
GCATCACAAATCACGTTTTTTTGAACAGCAAGTTGTCGTTTAGCTCCATT
GTAAAGTTCTTCAAGACTAACTTTAAGTTGATGCACAGTGTCTTTTCCCC
TCGCTTTTTCTCCAGGTTGTCTTCTACGGCCACCACCAAAGAACATATCA
AAGATATCAAATGGAGAATGATATTCACCACCACCTCCTTCTTTGAGAGC
TTGTTCACCATGTTTGTCATAAATTTCTCTCTTCTTTTCATCACTCAAAA
CTTCAAATGCAGCAGAAATCTCCTTAAACTTCTCAGGTTCATCAGGATTT
TTGTCTGGGTGATATTTCAAGGCCATTTTTCGATAGGCCTTTTTAATTTC
AGGTTGAGTTGCTTCTGGTGCCACACCAAGAATATCGTAAAGCTTCGTTT
CTTTCACCATTTTGAATAGCTTGTTTACTACTTTTCAGTCTTTCGAGTTA
AGTTGAGTGATGTTGTTTATTACAgcaaaacgaaagtaaatggAGCTTTT
AGCTTTTAGTCGATATCTTGCCAGAAGCTTCTTGAAGAAAATGGAAGCTT
TTTAGTTGGGCAAGAAAAAAGCTTCTTTTTGCATTTATGCACGGCCACAC
CGTGGTTTCCAATGATTGATATAACGGTTAAAAGGTTTTTATATGGTGTG
TGTAGCCAGAGTTAAGTTACCTTCAACTTGATGAAGTTGTTAATCCTAGA
AGGAAGGCGAAGCGCTCGTCGGATTCATCTACTTTCTAATAAAAGTTAAG
CTTTCCTGTTAGTTTATAAAAACGCGGTCTAAACTCAGGTTGGTAAGTAT
AACATGGCGGCCTCGCAGCTTTCACATGCAccgtacaattttttttgact
atCATATCTTTTTACGCACAAACTCTTACTCTACTACCGTCAAgtactct
aacttgggacgattggttgtTGGtagaaacatgggactgttgatatctgg
ggcctgtattttca

Coding sequence (CDS) from alignment at sc0000512:119482..121745

>TCONS_00024908 ID=TCONS_00024908|Name=TCONS_00024908|organism=Clytia hemisphaerica|type=CDS|length=1200bp|location=Sequence derived from alignment at sc0000512:119482..121745 (Clytia hemisphaerica)
TTATGATGTCTGGCATTGTACTCCTCCTTGGCCACGTTCATCCTCATCCT
CATCATAATAACTATTTGAGCGCCCTTGATGAGGAAGCTCAGACATTTCA
CACAAATGTACCTCTTCCCCAATATCCGAAGGTACATGCTTTTCTCTGGG
CGGTAAGAGCTTTTCAAGTGCTTCACATTGCTGTGGCTTTATGAAACCAT
TTTCAGGGAAtgcaatttcaaaagaaataatCAATCTTCCTTTCTCATAC
TCATTACTTGGGTAAGGCATTCCTTCTCCATCAATACATTTCGGTTTGTT
TGGCCGGATGACAGCACCTGGGGCAGAGACAACTTTGATATATCGATTAT
CTTTATCAAGCGTTTTCACTAATTTTGTGAAACCACACAGTGCATCAGCT
AATTCAATGCTCATGTTATAATGAAGATCAGTCCCATTTCTCTTGAAGCG
ATCATGTTCTTTTTCATCCAAAACTATGATGATATCTCCTGGCTCAGTTC
CTGGCGCTTGGTCTCCTTCCTCcctaaatttgattttttgtccatCTTTC
ATGCCAGGATCAATATGACAATCCAACACTTTACGCTCTCTGAGAACTTT
CTTTCCGTTACATTTCTTACACCTATCTTTATCCTTGATTTTTTCACCTG
TTTGGTTACATTCACGGCATGGCTGTTGGATTTGTTGCACCATTCCTGGA
CCTATTTGTCTCAACTTCACATCAACACCAGATCCATTACAGTTGTCACA
CTTTTGTACAGATCCTTCTTTACCACCAATCCCATTACATGCATCACAAA
TCACGTTTTTTTGAACAGCAAGTTGTCGTTTAGCTCCATTGTAAAGTTCT
TCAAGACTAACTTTAAGTTGATGCACAGTGTCTTTTCCCCTCGCTTTTTC
TCCAGGTTGTCTTCTACGGCCACCACCAAAGAACATATCAAAGATATCAA
ATGGAGAATGATATTCACCACCACCTCCTTCTTTGAGAGCTTGTTCACCA
TGTTTGTCATAAATTTCTCTCTTCTTTTCATCACTCAAAACTTCAAATGC
AGCAGAAATCTCCTTAAACTTCTCAGGTTCATCAGGATTTTTGTCTGGGT
GATATTTCAAGGCCATTTTTCGATAGGCCTTTTTAATTTCAGGTTGAGTT
GCTTCTGGTGCCACACCAAGAATATCGTAAAGCTTCGTTTCTTTCACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013999XLOC_013999Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024908-proteinTCONS_00024908-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00024908-exon-sc0000512-1491911889:119482..121745TCONS_00024908-exon-sc0000512-1491911889:119482..121745Clytia hemisphaericaexon
TCONS_00024908-exon-sc0000512-1510915933:119482..121745TCONS_00024908-exon-sc0000512-1510915933:119482..121745Clytia hemisphaericaexon
TCONS_00024908-exon-sc0000512-1575043694:119482..121745TCONS_00024908-exon-sc0000512-1575043694:119482..121745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000512supercontigsc0000512:119482..121745 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
250.658	250.289	139.255	127.863	124.883	98.5183	129.468	140.843	297.015	173.805	621.415	599.162	747.593	811.534	546.034	406.345	282.18	401.553	616.87	623.752	550.583	576.728	351.138	447.351	518.981	537.025	613.166	1049.31	255.542	294.6
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
IPR001305HSP_DnaJ_Cys-rich_dom
IPR002939DnaJ_C
IPR018253DnaJ_domain_CS
IPR012724DnaJ
IPR008971HSP40/DnaJ_pept-bd
Vocabulary: Molecular Function
TermDefinition
GO:0031072heat shock protein binding
GO:0051082unfolded protein binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
GO:0009408response to heat
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
biological_process GO:0009408 response to heat
molecular_function GO:0005524 ATP binding
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0051082 unfolded protein binding
Blast
[Close]
BLAST of TCONS_00024908 vs. Swiss-Prot (Human)
Match: DNJA1 (DnaJ homolog subfamily A member 1 OS=Homo sapiens GN=DNAJA1 PE=1 SV=2)

HSP 1 Score: 456.833 bits (1174), Expect = 1.541e-153
Identity = 240/403 (59.55%), Postives = 293/403 (72.70%), Query Frame = 3 
Query:  555 MVKETKLYDILGVAPEATQPEIKKAYRKMALKYHPDKNPDEPEKFKEISAAFEVLSDEKKREIYDKHGEQALKEGGGGEYH-SPFDIFDMFFGGGRRRQPGEKARGKDTVHQLKVSLEELYNGAKRQLAVQKNVICDACNGIGGKEGSVQKCDNCNGSGVDVKLRQIGPGMVQQIQQPCRECNQTGEKIKDKDRCKKCNGKKVLRERKVLDCHIDPGMKDGQKIKFREEGDQAPGTEPGDIIIVLDEKEHDRFKRNGTDLHYNMSIELADALCGFTKLVKTLDKDNRYIKVVSAPGAVIRPNKPKCIDGEGMPYPSNEYEKGRLIISFEIAFPENGFIKPQQCEALEKLLPPREKHVPSDIGEEVHLCEMSELPHQGRSNSYYD---EDEDERGQGGVQCQTS 1751
            MVKET  YD+LGV P ATQ E+KKAYRK+ALKYHPDKNP+E EKFK+IS A+EVLSD KKRE+YDK GEQA+KEGG G    SP DIFDMFFGGG R Q   + RGK+ VHQL V+LE+LYNGA R+LA+QKNVICD C G GGK+G+V+ C NC G+G+ +++ QIGPGMVQQIQ  C EC   GE+I  KDRCK CNG+K++RE+K+L+ HID GMKDGQKI F  EGDQ PG EPGDIIIVLD+K+H  F R G DL   M I+L +ALCGF K + TL  DNR I + S PG +++    KC+  EGMP     YEKGRLII F++ FPENGF+ P +   LEKLLP R++   +D  ++V L +    P+Q R   Y     ED++   +GGVQCQTS
Sbjct:    1 MVKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQ--RERRGKNVVHQLSVTLEDLYNGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCMECQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDIIIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTL--DNRTIVITSHPGQIVKHGDIKCVLNEGMPIYRRPYEKGRLIIEFKVNFPENGFLSPDKLSLLEKLLPERKEVEETDEMDQVELVDFD--PNQERRRHYNGEAYEDDEHHPRGGVQCQTS 397
The following BLAST results are available for this feature:
BLAST of TCONS_00024908 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNJA11.541e-15359.55DnaJ homolog subfamily A member 1 OS=Homo sapiens ... [more]
back to top