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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00024920 ID=TCONS_00024920|Name=TCONS_00024920|organism=Clytia hemisphaerica|type=transcript|length=1868bpRun BLAST on NCBI transcript from alignment at sc0000513:93895..123863- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00024920 ID=TCONS_00024920|Name=TCONS_00024920|organism=Clytia hemisphaerica|type=transcript|length=29969bp|location=Sequence derived from alignment at sc0000513:93895..123863- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00024920 vs. Swiss-Prot (Human)
Match: TTC25 (Tetratricopeptide repeat protein 25 OS=Homo sapiens GN=TTC25 PE=1 SV=2) HSP 1 Score: 429.483 bits (1103), Expect = 6.134e-141 Identity = 233/497 (46.88%), Postives = 342/497 (68.81%), Query Frame = 2
Query: 365 EIEGPKSSFGTYLAEGDALFKQSEFKKALESYSLALEIEPEDKNCLVARSKCYLKLGDPQKALQDAEEALKEDKEFNRGLYRKAEALYSMGDFEYALMYYHRGHHLRPELDEFRLGIQKAQEAIDNSIGNAANVKLENKGDLSFFNRQ-DDLGSKKRGGYNKPARNLKLKPVIVNRNKEVKPPAPSKKTVKQLLGELYADKEYMEKLMNDDEFIKS--HSNKPVYDLVQSGLTYLDTRTEFWRQQRPLYARRKDNXXXXXX---XXXXXXXXXXXXVLIQLEEVDQALANGDAERSLKLAQALMKTVEEADPASLPNKNDVIANIHSCIGNAYVEIESFTKALKHHQKDLEISKKSKSTEGVSRGLDNVGRVYARMGDYEKAVRSWNEKLPMVKTPLETTWIFHEIGRCYLELSKHKKAKDCGLKSLEAAIEFEDEVWQLNASVLVAQAHVKLGEFTYGLDKFEEAHNLAVSLSDDAAQSAITKAIADLKERIERAL 1837
E E +S+F +Y+AEG+ L+ EF KA +S+S AL ++ DKNCLVARSKC+LK+GD +++L+DAE +L+ D F +G+ +KAE LY+MGDFE+AL++YHRG+ LRP+ EFR+GIQKAQEAI+NS+G+ +++KLENKGDLSF ++Q +++ ++++ +P ++L L P + K S+KTV+QLLGELY DKEY+EKL+ D++ IK V DL+ +G+ YLDT + FWRQQ+P+YAR +D K+ +L LE++D L +G AE SL+ A+ ++K V E + +PNK++++ N++SCIGNA +E+ AL+ H+KDLEI+K+ + SR LDN+GRV+AR+G +++A+ +W EK+P+ KT LE TW+FHEIGRCYLEL + +A++ G KS + A E D WQLNASVLVAQA VKL +F ++ FE+A A + ++ AQ AI A+ D + I R L
Sbjct: 5 EGETLRSTFPSYMAEGERLYLCGEFSKAAQSFSNALYLQDGDKNCLVARSKCFLKMGDLERSLKDAEASLQSDPAFCKGILQKAETLYTMGDFEFALVFYHRGYKLRPD-REFRVGIQKAQEAINNSVGSPSSIKLENKGDLSFLSKQAENIKAQQK---PQPMKHL-LHPT--KGEPKWKASLKSEKTVRQLLGELYVDKEYLEKLLLDEDLIKGTMKGGLTVEDLIMTGINYLDTHSNFWRQQKPIYARERDRKLMQEKWLRDHKRRPSQTAHYILKSLEDIDMLLTSGSAEGSLQKAEKVLKKVLEWNKEEVPNKDELVGNLYSCIGNAQIELGQMEAALQSHRKDLEIAKEYDLPDAKSRALDNIGRVFARVGKFQQAIDTWEEKIPLAKTTLEKTWLFHEIGRCYLELDQAWQAQNYGEKSQQCAEEEGDIEWQLNASVLVAQAQVKLRDFESAVNNFEKALERAKLVHNNEAQQAIISALDDANKGIIREL 494 The following BLAST results are available for this feature:
BLAST of TCONS_00024920 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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