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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025012 ID=TCONS_00025012|Name=TCONS_00025012|organism=Clytia hemisphaerica|type=transcript|length=847bp
tggtaatatactttttctataccGATCAATTCGAAGTTGTGATTCATATG
GAGAGAGTTTGAGTGTGGAGAATTCTGGGTCAAAATATGCGATTGTGCGA
GCTGATATTAATTCTTTTCACTTTGGTGGTTGGAACAAGCTCAAAAGCAA
CAGtgatttatcGGTTGTACAGCCTTCAGCGTTACATCGCCTACAAAAAT
AGAGTGACTTGGCATCAAGCTCAAACGAACTGCAGAGCAATCGGTGGTGA
ATTGTtgacaatcaatgatgaaaaagaacataaatttcttgaaaaggttt
tgaaaaaGATGAAATTTACTGGAAAATCTTTGCCTTTCTTTTGGATCGGT
TTAAATGATATTGCAAAAGCAGGTGTGCACGTTTGGTCCGGACAACCCGT
TACATTCAAAGGATATATCAAACGATGTAATGGATTACGTTTTCGTGATG
GAACGCGAAAGACTGGTGCCGCCCTTTATGTGAGCAAAAGTAGATTTTGC
GTACTTGATAAAACTTTTAGGAAAGTTTTATATGATAGTAGTTTGAAGTA
TAAGTTTGGTTATATATGTGAAAATCAAAAACCACTCAAATTGAAAGCGA
CAAGTtaaaagaaaaaggagaaagaagatttaaattttttgatattttgt
aatttttgttttaatatttttgcttATCAAATTTACGTCCTCGTttgtat
aatttcaaaaaaaatccaagTAAATAAATATCTCAGCCTATAGCTGAAAA
GATTCTCCAATCAGACACTTTGAATTGATTTTGTTATGAGgagggctctt
ccagaaaatgttcggtGCGAAGTAGACACTGTTCTCTGCTCTTTGAT Run BLAST on NCBI protein sequence of TCONS_00025012-protein >TCONS_00025012-protein ID=TCONS_00025012-protein|Name=TCONS_00025012-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MRLCELILILFTLVVGTSSKATVIYRLYSLQRYIAYKNRVTWHQAQTNCR
AIGGELLTINDEKEHKFLEKVLKKMKFTGKSLPFFWIGLNDIAKAGVHVW
SGQPVTFKGYIKRCNGLRFRDGTRKTGAALYVSKSRFCVLDKTFRKVLYD
SSLKYKFGYICENQKPLKLKATS Run BLAST on NCBI transcript from alignment at sc0000515:199320..202286+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025012 ID=TCONS_00025012|Name=TCONS_00025012|organism=Clytia hemisphaerica|type=transcript|length=2967bp|location=Sequence derived from alignment at sc0000515:199320..202286+ (Clytia hemisphaerica)
tggtaatatactttttctataccGATCAATTCGAAGTTGTGATTCATATG
GAGAGAGTTTGAGTGTGGAGAATTCTGGtaagtttgaaaattgtcaaaat
agattttcaagGGGATTATGAgatcatttttgatatttggcttgGAGATA
CCTTTTATGGTCCTAAGAAACACCTCCAAAATTCTTGACCCataattatt
ttccaaagctgagatattcgactttgaattttcaaatttttaattgaaaa
ctaTAGAAATTCAACGTAAAGTAAAGACTGTAAGGACTCATTTTTACaga
tttcaaagtcaaatatctcagctttggaaaaaaaatggGTCAAAAGATTT
AGAGGTGTCTTTCTGGACCATATTctaagccaaatatcaaaaaccatctg
ataatccctttaaTCAACCTTTCTCAATGACCCTTTGTTGGTTAATACCT
ATAATGGGCTCCTTTGTcgttaattttattttgtacaGCTCTAAAATCCA
ATTTCGATTCATTTGAGTGTTTTCCCGGCAGAGAGTTTGGGGTTAAATTT
CTAAATGGTCCTTCTATAATGAATTTTAGAGCATTCTATCAAGGGAATTG
GCCCAATTTTTGCAATGCTCAGTCTGTGGCATCGTGTGGGTTTCAAATTT
CTTTACGAAATTTGATTCTCTTACGGCTTTATTCATTTGTCTTATTTGTA
GGGTCAAAATATGCGATTGTGCGAGCTGATATTAATTCTTTTCACTTTGG
TGGTTGGAACAAGCTCAAAAGCAACAGGTTTGTACACAGTTAGATTTTCG
TTGAATTTTTAATAggattttgacaaaattttcagaAGTCTGTGGATAGA
GCTATTTCAACTAAATGCGATAGCAAGGGTTCGCCGTACGAATTTCTCCC
AATGTTCCGTTCATAGCCGAGCCGGCTAGCCAGGGACCCTGTGATTGAAA
ACAAACTGTCTCAAAGTCCTAGATAGACCTTTTACTTttgcaaaaggtct
attactgGACTATACTTTAAATATCGACTTTATTTCTAAGAGCGACAACT
TTTCGTGGTGGTTTGGCACCAAATCTTGTTCATACTGAACTGTCTAGTTA
CAATGTTTACGAAAACAAGGCTTAAGATTTGGGTACCAAACCCTAATAGA
GTTGTTTTCAATGAGAAGTTCAGTATTTTCAAACTAAGAGGGGTCACTTC
TAATCAATAGAAGTTCTctgttttttagtgatttatcGGTTGTACAGCCT
TCAGCGTTACATCGCCTACAAAAATAGAGTGACTTGGCATCAAGCTCAAA
CGAACTGCAGAGCAATCGGTGGTGAATTGTtgacaatcaatgatgaaaaa
gaacataaatttcttgaaaaggttttgaaaaagtaTGTATTCGTGGATTT
ATAATTTGAATAACCATACAGCTTGGTTTGCCTAGGATGCTCGGGGATTT
TTGACGTGAATAAACAATgaattactcttgtctcccgaatagacgtcccc
ccccccgctaattgttaagagacaaaaaaatccatcctcccgctcttatt
aagaccccccccctcctgctaattaaattcgaataattcaatattttatt
acagtgtagatagaccttaaacttgttaaaattttcctttttgttagtat
tggttcttattttacgtgttcatttgttaaagtttcttttttgttgttga
aattgataccaGTTAGAAAAATTcagtcttcaaattaccccccctgctta
ttagaatttagaaaattttgctTATTCAGACCCCCCACCCGTCTATTCGG
GATACAAGAATAACTTCCCATCAAGTTTAAAATAGGTCAAACCTTAAAAA
TACGCACGGCAGTTAAATGGATTTTAAtgcgccaaaataagttccgcCAA
ATTATGTACAATAATTGGTGAATTGGCctatttgccaaaatttcttttct
taaagGTAGACCCAGGGTTTCGAAAAgagaattttcataaattttgaaca
CCTGAAATAGATTTAATGtgtgatagctcaaaatttaagttagcttttcc
tttttctgatgGTGAAAAGCTTAgatttataacatttttatAGTTTTCTC
ACAGCCTCACTCCGAActtatacactttttttaaaacacCCGGTATTTCG
ATGAAAatacaatagacgatatcggctttaggaattctccccgaatgatt
acccatgatgcattgcgcaaaaaaattcacggacaatattgacttactga
atttttttgcgcaatgtatcatgggtaatcattcggggagaatttcgtta
agccgatatcgtctattaaaaTCTCCACACAAGTACGGAAAACATATGTT
ATGGAGACGCTCTAGTAATAGAGGATCAAATTAAAGAGCCTTCACTGTAT
ACATTTCTATATTTTCTGTATTCCTAGGATGAAATTTACTGGAAAATCTT
TGCCTTTCTTTTGGATCGGTTTAAATGATATTGCAAAAGCAGGTGTGCAC
GTTTGGTCCGGACAACCCGTTACATTCAAAGGATATATCAAACGATGTAA
TGGATTACGTTTTCGTGATGGAACGCGAAAGACTGGTGCCGCCCTTTATG
TGAGCAAAAGTAGATTTTGCGTACTTGATAAAACTTTTAGGAAAGTTTTA
TATGATAGTAGTTTGAAGTATAAGTTTGGTTATATATGTGAAAATCAAAA
ACCACTCAAATTGAAAGCGACAAGTtaaaagaaaaaggagaaagaagatt
taaattttttgatattttgtaatttttgttttaatatttttgcttATCAA
ATTTACGTCCTCGTttgtataatttcaaaaaaaatccaagTAAATAAATA
TCTCAGCCTATAGCTGAAAAGATTCTCCAATCAGACACTTTGAATTGATT
TTGTTATGAGgagggctcttccagaaaatgttcggtGCGAAGTAGACACT
GTTCTCTGCTCTTTGAT Coding sequence (CDS) from alignment at sc0000515:199320..202286+ >TCONS_00025012 ID=TCONS_00025012|Name=TCONS_00025012|organism=Clytia hemisphaerica|type=CDS|length=1566bp|location=Sequence derived from alignment at sc0000515:199320..202286+ (Clytia hemisphaerica)
ATGCGATTGTGCGAGCTGATATTAATTCTTTTCACTTTGGTGGTTGGAAC
AAGCTCAAAAGCAACAGtgatttatcGGTTGTACAGCCTTCAGCGTTACA
TCGCCTACAAAAATAGAGTGACTTGGCATCAAGCTCAAACGAACTGCAGA
GCAATCGGTGGTGAATTGTtgacaatcaatgatgaaaaagaacataaatt
tcttgaaaaggttttgaaaaaGATGAAATTTACTGGAAAATCTTTGCCTT
TCTTTTGGATCGGTTTAAATGATATTGCAAAAGCAGGTGTGCACGTTTGG
TCCGGACAACCCGTTACATTCAAAGGATATATCAAACGATGTAATGGATT
ACGTTTTCGTGATGGAACGCGAAAGACTGGTGCCGCCCTTTATGTGAGCA
AAAGTAGATTTTGCGTACTTGATAAAACTTTTAGGAAAGTTTTATATGAT
AGTAGTTTGAAGTATAAGTTTGGTTATATATGTGAAAATCAAAAACCACT
CAAATTGAAAGCGACAAGTtaaATGCGATTGTGCGAGCTGATATTAATTC
TTTTCACTTTGGTGGTTGGAACAAGCTCAAAAGCAACAGtgatttatcGG
TTGTACAGCCTTCAGCGTTACATCGCCTACAAAAATAGAGTGACTTGGCA
TCAAGCTCAAACGAACTGCAGAGCAATCGGTGGTGAATTGTtgacaatca
atgatgaaaaagaacataaatttcttgaaaaggttttgaaaaaGATGAAA
TTTACTGGAAAATCTTTGCCTTTCTTTTGGATCGGTTTAAATGATATTGC
AAAAGCAGGTGTGCACGTTTGGTCCGGACAACCCGTTACATTCAAAGGAT
ATATCAAACGATGTAATGGATTACGTTTTCGTGATGGAACGCGAAAGACT
GGTGCCGCCCTTTATGTGAGCAAAAGTAGATTTTGCGTACTTGATAAAAC
TTTTAGGAAAGTTTTATATGATAGTAGTTTGAAGTATAAGTTTGGTTATA
TATGTGAAAATCAAAAACCACTCAAATTGAAAGCGACAAGTtaaATGCGA
TTGTGCGAGCTGATATTAATTCTTTTCACTTTGGTGGTTGGAACAAGCTC
AAAAGCAACAGtgatttatcGGTTGTACAGCCTTCAGCGTTACATCGCCT
ACAAAAATAGAGTGACTTGGCATCAAGCTCAAACGAACTGCAGAGCAATC
GGTGGTGAATTGTtgacaatcaatgatgaaaaagaacataaatttcttga
aaaggttttgaaaaaGATGAAATTTACTGGAAAATCTTTGCCTTTCTTTT
GGATCGGTTTAAATGATATTGCAAAAGCAGGTGTGCACGTTTGGTCCGGA
CAACCCGTTACATTCAAAGGATATATCAAACGATGTAATGGATTACGTTT
TCGTGATGGAACGCGAAAGACTGGTGCCGCCCTTTATGTGAGCAAAAGTA
GATTTTGCGTACTTGATAAAACTTTTAGGAAAGTTTTATATGATAGTAGT
TTGAAGTATAAGTTTGGTTATATATGTGAAAATCAAAAACCACTCAAATT
GAAAGCGACAAGTtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025012-exon-sc0000515-1491911889:199320..199396 | TCONS_00025012-exon-sc0000515-1491911889:199320..199396 | Clytia hemisphaerica | exon |
| TCONS_00025012-exon-sc0000515-1510915933:199320..199396 | TCONS_00025012-exon-sc0000515-1510915933:199320..199396 | Clytia hemisphaerica | exon |
| TCONS_00025012-exon-sc0000515-1575043694:199320..199396 | TCONS_00025012-exon-sc0000515-1575043694:199320..199396 | Clytia hemisphaerica | exon |
| TCONS_00025012-exon-sc0000515-1491911889:200021..200096 | TCONS_00025012-exon-sc0000515-1491911889:200021..200096 | Clytia hemisphaerica | exon |
| TCONS_00025012-exon-sc0000515-1510915933:200021..200096 | TCONS_00025012-exon-sc0000515-1510915933:200021..200096 | Clytia hemisphaerica | exon |
| TCONS_00025012-exon-sc0000515-1575043694:200021..200096 | TCONS_00025012-exon-sc0000515-1575043694:200021..200096 | Clytia hemisphaerica | exon |
| TCONS_00025012-exon-sc0000515-1491911889:200548..200701 | TCONS_00025012-exon-sc0000515-1491911889:200548..200701 | Clytia hemisphaerica | exon |
| TCONS_00025012-exon-sc0000515-1510915933:200548..200701 | TCONS_00025012-exon-sc0000515-1510915933:200548..200701 | Clytia hemisphaerica | exon |
| TCONS_00025012-exon-sc0000515-1575043694:200548..200701 | TCONS_00025012-exon-sc0000515-1575043694:200548..200701 | Clytia hemisphaerica | exon |
| TCONS_00025012-exon-sc0000515-1491911889:201747..202286 | TCONS_00025012-exon-sc0000515-1491911889:201747..202286 | Clytia hemisphaerica | exon |
| TCONS_00025012-exon-sc0000515-1510915933:201747..202286 | TCONS_00025012-exon-sc0000515-1510915933:201747..202286 | Clytia hemisphaerica | exon |
| TCONS_00025012-exon-sc0000515-1575043694:201747..202286 | TCONS_00025012-exon-sc0000515-1575043694:201747..202286 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000515 | supercontig | sc0000515:199320..202286 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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