TCONS_00025079 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025079
Unique NameTCONS_00025079
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025079 ID=TCONS_00025079|Name=TCONS_00025079|organism=Clytia hemisphaerica|type=transcript|length=651bp
GAAACAAACCGAACACAACTTCATCACCTCGCTGAGGCTTTAGACAAAAG
CATCAAGTTCATGTGGGAATACGAATCCTTTTTAACTTTCCCTTATAACT
ATAAATACATTTCAATAGATGTTTGTGATGATTTTAATATTCTTCCAAAG
ATCGTTGAATCTATATACTTGAATGAATCACTTCACTACAATACGTGGTC
TGAAAAGCTGAACAAATCGTACAGCTTATCATCAGTCATTGCAATTTACG
CAGAAGGACCAGCAGAGATGATGAATTATCTGGACGCTAGTTTTCATGAT
GACATCAGGTTTACAGGAAGATACGTCTCTTACAATTCTTCTATTGACCA
TGAGCTGTACGACATTTACGCTACTATTCTCCATTATATAATCACGCATC
GTTTAGAATTGGAGCATCTCGTTATATTCAAAGTTCAACCGTTCATGATG
AAccctctttttgaaattttgaaatataaagcCCTGCAATCAAAACTTTG
TGTCCATTGGAAAGAAATTGACAAGTCTTGGGATATAAATCAGGAAGATT
ACTTCACTCCAAAATGGTTCAAGAAAAACAAACCAGCAGTGCTTACTATG
GGTGATAAATATGGACAAATTTCAATCGTCGAACAATTAGCGATATTAAT
G
Run BLAST on NCBI

protein sequence of TCONS_00025079-protein

>TCONS_00025079-protein ID=TCONS_00025079-protein|Name=TCONS_00025079-protein|organism=Clytia hemisphaerica|type=polypeptide|length=217bp
ETNRTQLHHLAEALDKSIKFMWEYESFLTFPYNYKYISIDVCDDFNILPK
IVESIYLNESLHYNTWSEKLNKSYSLSSVIAIYAEGPAEMMNYLDASFHD
DIRFTGRYVSYNSSIDHELYDIYATILHYIITHRLELEHLVIFKVQPFMM
NPLFEILKYKALQSKLCVHWKEIDKSWDINQEDYFTPKWFKKNKPAVLTM
GDKYGQISIVEQLAILM
Run BLAST on NCBI

transcript from alignment at sc0000520:71418..72068

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025079 ID=TCONS_00025079|Name=TCONS_00025079|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at sc0000520:71418..72068 (Clytia hemisphaerica)
CATTAATATCGCTAATTGTTCGACGATTGAAATTTGTCCATATTTATCAC
CCATAGTAAGCACTGCTGGTTTGTTTTTCTTGAACCATTTTGGAGTGAAG
TAATCTTCCTGATTTATATCCCAAGACTTGTCAATTTCTTTCCAATGGAC
ACAAAGTTTTGATTGCAGGgctttatatttcaaaatttcaaaaagagggT
TCATCATGAACGGTTGAACTTTGAATATAACGAGATGCTCCAATTCTAAA
CGATGCGTGATTATATAATGGAGAATAGTAGCGTAAATGTCGTACAGCTC
ATGGTCAATAGAAGAATTGTAAGAGACGTATCTTCCTGTAAACCTGATGT
CATCATGAAAACTAGCGTCCAGATAATTCATCATCTCTGCTGGTCCTTCT
GCGTAAATTGCAATGACTGATGATAAGCTGTACGATTTGTTCAGCTTTTC
AGACCACGTATTGTAGTGAAGTGATTCATTCAAGTATATAGATTCAACGA
TCTTTGGAAGAATATTAAAATCATCACAAACATCTATTGAAATGTATTTA
TAGTTATAAGGGAAAGTTAAAAAGGATTCGTATTCCCACATGAACTTGAT
GCTTTTGTCTAAAGCCTCAGCGAGGTGATGAAGTTGTGTTCGGTTTGTTT
C

Coding sequence (CDS) from alignment at sc0000520:71418..72068

>TCONS_00025079 ID=TCONS_00025079|Name=TCONS_00025079|organism=Clytia hemisphaerica|type=CDS|length=651bp|location=Sequence derived from alignment at sc0000520:71418..72068 (Clytia hemisphaerica)
CATTAATATCGCTAATTGTTCGACGATTGAAATTTGTCCATATTTATCAC
CCATAGTAAGCACTGCTGGTTTGTTTTTCTTGAACCATTTTGGAGTGAAG
TAATCTTCCTGATTTATATCCCAAGACTTGTCAATTTCTTTCCAATGGAC
ACAAAGTTTTGATTGCAGGgctttatatttcaaaatttcaaaaagagggT
TCATCATGAACGGTTGAACTTTGAATATAACGAGATGCTCCAATTCTAAA
CGATGCGTGATTATATAATGGAGAATAGTAGCGTAAATGTCGTACAGCTC
ATGGTCAATAGAAGAATTGTAAGAGACGTATCTTCCTGTAAACCTGATGT
CATCATGAAAACTAGCGTCCAGATAATTCATCATCTCTGCTGGTCCTTCT
GCGTAAATTGCAATGACTGATGATAAGCTGTACGATTTGTTCAGCTTTTC
AGACCACGTATTGTAGTGAAGTGATTCATTCAAGTATATAGATTCAACGA
TCTTTGGAAGAATATTAAAATCATCACAAACATCTATTGAAATGTATTTA
TAGTTATAAGGGAAAGTTAAAAAGGATTCGTATTCCCACATGAACTTGAT
GCTTTTGTCTAAAGCCTCAGCGAGGTGATGAAGTTGTGTTCGGTTTGTTT
C
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014099XLOC_014099Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025079-exon-sc0000520-1491911889:71418..72068TCONS_00025079-exon-sc0000520-1491911889:71418..72068Clytia hemisphaericaexon
TCONS_00025079-exon-sc0000520-1510915933:71418..72068TCONS_00025079-exon-sc0000520-1510915933:71418..72068Clytia hemisphaericaexon
TCONS_00025079-exon-sc0000520-1575043694:71418..72068TCONS_00025079-exon-sc0000520-1575043694:71418..72068Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025079-proteinTCONS_00025079-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000520supercontigsc0000520:71418..72068 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.321066	0.547907	0.908817	0.533481	0.649462	0.342143	0.41278	0.77288	0.879306	1.00538	1.78905	1.06914	3.60576	4.49051	0.0455779	0.146736	0.584622	0.370561	4.47872	6.85584	2.09536	2.27121	0.828287	0.920374	1.55121	2.30737	0.142986	0	0.178179	0.090768
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025079 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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