TCONS_00025092 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025092
Unique NameTCONS_00025092
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1706

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025092 ID=TCONS_00025092|Name=TCONS_00025092|organism=Clytia hemisphaerica|type=transcript|length=1706bp
TACGGAATGATGACGATGACGATATAATGGACATTGTAAAACCAGTCGTG
ATCGTTGGATCCATCGTTCTAGTTCTTGTTGGtgtttttgtttacattat
GTACAAACGAAGGAAATACATCAAGGAACAgaaagaaagaaagatatcTG
AAGCACAAGCTCCGCTACCCGGCTGGATGAATCATGCAGCGAGAAATGCT
GCAAAAATGTCAACGGTGACAATACTCAGTGAAGACGTATTATACGAACA
ACCGAACGAAATGTCCATAAAAGCCGATGCATTAGCCAATCACAACAAAG
CTTTTGACGAAGACGAAGAGGATTCCATCTCTAACAAATCGACTAATGac
caaaacaacaaagacaatacAACTAATCATATCcataataacaataacaa
tgGCAGTATTAAAAAAGATGATTCTCCTAAAATTGAAGATGTAGAGCTTA
AGGAATCTCCTAAGACAAACAATATCTCAAATGGGCATGTGTCACCACTT
AAGGACGATTCAGTAGACAGCCCACTTGATCAGCTTCAAGAGACAGAGAT
CTCTAATGATACTGTAGATAGCCCACTTGATCACACTGAAGAGACTCTAA
TACCTGACGATACTGTAATTCATATTCCCGATAACGATGACAGCGATGAC
AGTGACTCAGATTCAGAAATTGGAGAACCGATAGGAAATTCAACTAGACA
GtcagatgaaaatgaagatgcaAAAACGATGGTCCATGATATCAGTGGAT
CTTCCTTACCATCTCTGAGTGGCTCATTAGTTAATGATGATTTCTTCGGA
CAAATGATGAATGAATACGATCGTATAAATACGTTACCGAGGAAATAACA
AGATAGTTGATCAAATGGTAAATCCATCAGCTGGTCAAAATCGATCACAA
ATcgtcaaaaaaattgtttggcgTAATACAGCGGaccctctaattcgatc
ttcaagggaccaagaatttccttcgaattagagaaagattctaTCATaga
tagaaagattcgaatagtagaggttcgaattatagagagttgaTAGTACT
TCTGCTTGGTAGTAATATCAATGTTGGGAAGACCAATAAATCTGTCTTCC
AATGAAACTTTAATGACAGATTAACTGGATAACACCCAATTTACACAGCC
GAAAATCAAGTAATGTTAACCTTTCTCCAAGAGACTCATTTGATGAAAGC
AAGTACATTCAAGGAATGCTTCTCAGTAAGACCCGAGAAGGAGCATATAA
GGGTAAGAAGAAGAAGCaaagtttttaaatattatatttatatttcTTTT
AACATTAAATCTGAGGgttgaatatatattttatatttcgGAGTAATTAA
TAAAAGGGGTGAGTAAATCATTAAATGACAAAAACGAGGCCATAAGAAAA
GTTACGCTAATGAATGGATAGGGCGGGCTGGTTCCAAAATCCTTTTCACA
ATATTTGATGTAATATCAAGAAAATATCTTTAATTCACTCCCACTCCTAT
TGAAACAACCATTCCAGGGGGTTTTCACAATTATTTTCACTGTTTCATAG
GGTGGGTTTACATCTGAAGGGGAAAATTGATTAACCATCATTCCTTTGTT
GATAACAATGCAGAACATTTAAACCAAACAAAAGCTCGAAACCACTTTTA
CGTAGTCTTTTACAAATATCCAATCCTAACCAATGAGAATGCTTAGGTAA
AATCAA
Run BLAST on NCBI

transcript from alignment at sc0000521:30403..34833+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025092 ID=TCONS_00025092|Name=TCONS_00025092|organism=Clytia hemisphaerica|type=transcript|length=4431bp|location=Sequence derived from alignment at sc0000521:30403..34833+ (Clytia hemisphaerica)
TACGGGTTAGTTTTATTCGTATaagagtttttgtttttgacaattttttt
aaagtttcaaacttattttcaaCTTCGTGGCTTTTCTTAAGGTTGCACAC
TTCTAAATCACCGTAATTTACCTTTAGTATACACATTAGCCCTTCAACTC
ACAAAAGATACAAATCAAGAGTTTACAAGAGTGAAAATGGTGTCAGAATC
TGTCTTTCAATGANGACAAATCAAAAGTTTACAAGAGTGAAAATAGTGTC
AGAAGACTTTAGAGATTTGACATCAATCCTACCAAGTAAATTTGACTCAA
TCTCCTCACACTTTAAGGGTTTCATTCGTGTTTTAACAATGAGATCATCA
GCTTGGTTGAAGAATATAAGCTTCACCTCACACCCTCTCCAATGTGGCAA
TGtataatcaaaagaatttgaattcttttcaaTTTGTTCAAAATCCTTCC
CATAGAATGATGACGATGACGATATAATGGACATTGTAAAACCAGTCGTG
ATCGTTGGATCCATCGTTCTAGTTCTTGTTGGtgtttttgtttacattat
GTACAAACGAAGGAAATACATCAAGGAACAGTAagtaaattttcatttat
taagATTAATGAAATTGGACATTTCAaatcattttgttttttgttaaaat
tgctCATCTAGATTTCGAATGCAGTTGAGCGTCTCTCTAGTTCGATGCTC
AAAGGAATAAAAACTCTTCGATTTAGAGAAAGTTTCGAAtcacagagagt
aatttaaacaaCCTTCCAGCTGAGGGaagcaatattttagttcgaattac
agaaggaTTTGGATAACAGAGGTATAAATTAAAGAAAGTTGACTGTAGAT
GTTCTGAAGAAAATATATAGCATAATCTAGCCTGTCATGTATTTCATTTT
CGAATTGGACTAATAATTATTTAGAAATTCAAAGTATTTCACCAATACTG
TGCCAGCATACCAAATAAattattgttattgattacgTGTGCTAAAGCCA
AATGTTGGTCAAAGAAGAAGAATTCAAGATTGAATTGTGTTATCAGTAGA
TGATACATAATTTTCAAATTAGTAAAATACATCTGATTAATAAAAAGCAT
GTGTTGTTGTATACAAACTTTCGAATCTTATCTTTTTAATGAGGTGTATT
GACGTCATGCTTCCTTCCGATAGTGATTTCTAACCAAGAAAATTTATTAA
ATCGACTTCTTGattagttaaaaaaaaatggcCAGCCTTCGATGTTGCGA
AATTTATCTTGactcaaaaaaacgaaaactaaattgttttaaaaaccCTG
ATTTTCAAAACCAATTTTAGGGTATTTGCACCAAATAAGCAAGACTAAGA
CTTATCGTAAGCATTTCCTTTCTTTAAATCTATGTTACTTAAAATctcct
tttattttttcataggaaagaaagaaagatatcTGAAGCACAAGGTATGT
CCGATCTTTCGTTCTATTGATTATTCATATATTCTACAGTATATAGTCAA
GATTATGTTTTGACCTTTTCGGAAAAGATATTTACTATAGGCCTATTGTA
TTATACgatttttcaatcatttcagCTCCGCTACCCGGCTGGATGAATCA
TGCAGCGAGAAATGCTGGTATGTATTACTTGAAATATTTCTACTCCCGCA
GGTTaccaatttctttaaaaacaatctAGTACTGTAGAGAGGGCTTGGAC
TTCACTACTCTATGCTGCCTATCTATTTGGATTTAGTGACAGCAGGCTGC
TCAGCCCATTCTCACAATTGTGTTAACGCGACTAGGCCTCCTGTCAGCAA
CCTTGGACTGACTGCCCTGTTCCCCTCACATATCATGAGTTGACCCGTGT
GAAGTTTGTTGACTCACCAAATGAAACACTACGAGTCGGGATCGAACCAT
GATCTCCTGTATAGGAATCAAACTtgatgaccactataccacggcgCCTA
GCGCAtcgaatatcttttcaaaatagTTTTTGCTTTAGTaataatttaac
atttaatTTTTCATGAATCTTCAGCAAAAATGTCAACGGTGACAATACTC
AGTGAAGACGTATTATACGAACAACCGAACGAAATGTCCATAAAAGCCGA
TGCATTAGCCAATCACAACAAAGCTTTTGACGAAGACGAAGAGGTAGGGA
AGGttttttaagtttaacttttGAGAAGCGAGCGGAAGAAGAAGGAAGTT
ATTTTTTTTGGTTACAACTTAATGATTGAAGGTTTACAGAATATGGATAC
AGTTAGAtaccggcgtaaaaagggtcgATAATGTGCACAAATTGTCTCAT
GTCTTCCTTTAAATTCAATTGAAGCATTTACCATAAGTAACTTTTTCCAT
TCGATTCCTAGTGTTGATCTTTTTGTTATTATGTCTGTTTTGTTACTTAG
CATTGAGCTTTGTGAGCCAACCTTCATTAAGTGAGTGACCGCCTATAACC
CTCTCATCGTCTAGTAACCAGGAAACATCATCCGTAATTTCAACTAATCT
ACTAATATCACCAAATCAATTAATCATCAAATATACATACACCGCTTAAT
TATTGAGGTTTATGCAAAAAGTTCCTTGTATTTAATATTTGCGCAATATC
TTTACGCAAACAAGGTAAATTTTCACCGCTAATTCTTCCACTAACGTTTG
CTgctatttcaaaacttttgactGTTTTCAATAATCAAGAGTATCTCTAA
AGGTTGGGTGATGAAAACTCATCTACTATTGGCGGATCTTAGGGGGGTTC
ATTTCCATTTCATTCATTGATTTTCGAATCTTCAAATCGGGCAAAACTAT
GACTGGTCCTCACAGTGTCACTAAATTTCAGCAACCCTCCCCCAATATAG
agtgcttcctacggcactgtatgATGGTGATTCTTCATTCTCTTATAATA
GGCAGTATGGCCCACTATGAAACATTCtccgtcataaattttgaacaCTC
TAAAATCCACCACTATGACTACTCTATCGTTGCTGATAACTTTTGTTCTT
TTCAATCAAACGATACTTGACATATTGACCTTTCAATTTTCCCAGGATTC
CATCTCTAACAAATCGACTAATGaccaaaacaacaaagacaatacAACTA
ATCATATCcataataacaataacaatgGCAGTATTAAAAAAGATGATTCT
CCTAAAATTGAAGATGTAGAGCTTAAGGAATCTCCTAAGACAAACAATAT
CTCAAATGGGCATGTGTCACCACTTAAGGACGATTCAGTAGACAGCCCAC
TTGATCAGCTTCAAGAGACAGAGATCTCTAATGATACTGTAGATAGCCCA
CTTGATCACACTGAAGAGACTCTAATACCTGACGATACTGTAATTCATAT
TCCCGATAACGATGACAGCGATGACAGTGACTCAGATTCAGAAATTGGAG
AACCGATAGGAAATTCAACTAGACAGtcagatgaaaatgaagatgcaAAA
ACGATGGTCCATGATATCAGTGGATCTTCCTTACCATCTCTGAGTGGCTC
ATTAGTTAATGATGATTTCTTCGGACAAATGATGAATGAATACGATCGTA
TAAATACGTTACCGAGGAAATAACAAGATAGTTGATCAAATGGTAAATCC
ATCAGCTGGTCAAAATCGATCACAAATcgtcaaaaaaattgtttggcgTA
ATACAGCGGaccctctaattcgatcttcaagggaccaagaatttccttcg
aattagagaaagattctaTCATagatagaaagattcgaatagtagaggtt
cgaattatagagagttgaTAGTACTTCTGCTTGGTAGTAATATCAATGTT
GGGAAGACCAATAAATCTGTCTTCCAATGAAACTTTAATGACAGATTAAC
TGGATAACACCCAATTTACACAGCCGAAAATCAAGTAATGTTAACCTTTC
TCCAAGAGACTCATTTGATGAAAGCAAGTACATTCAAGGAATGCTTCTCA
GTAAGACCCGAGAAGGAGCATATAAGGGTAAGAAGAAGAAGCaaagtttt
taaatattatatttatatttcTTTTAACATTAAATCTGAGGgttgaatat
atattttatatttcgGAGTAATTAATAAAAGGGGTGAGTAAATCATTAAA
TGACAAAAACGAGGCCATAAGAAAAGTTACGCTAATGAATGGATAGGGCG
GGCTGGTTCCAAAATCCTTTTCACAATATTTGATGTAATATCAAGAAAAT
ATCTTTAATTCACTCCCACTCCTATTGAAACAACCATTCCAGGGGGTTTT
CACAATTATTTTCACTGTTTCATAGGGTGGGTTTACATCTGAAGGGGAAA
ATTGATTAACCATCATTCCTTTGTTGATAACAATGCAGAACATTTAAACC
AAACAAAAGCTCGAAACCACTTTTACGTAGTCTTTTACAAATATCCAATC
CTAACCAATGAGAATGCTTAGGTAAAATCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014110XLOC_014110Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025092-exon-sc0000521-1491911889:30403..30407TCONS_00025092-exon-sc0000521-1491911889:30403..30407Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1510915933:30403..30407TCONS_00025092-exon-sc0000521-1510915933:30403..30407Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1575043694:30403..30407TCONS_00025092-exon-sc0000521-1575043694:30403..30407Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1491911889:30858..30982TCONS_00025092-exon-sc0000521-1491911889:30858..30982Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1510915933:30858..30982TCONS_00025092-exon-sc0000521-1510915933:30858..30982Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1575043694:30858..30982TCONS_00025092-exon-sc0000521-1575043694:30858..30982Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1491911889:31818..31846TCONS_00025092-exon-sc0000521-1491911889:31818..31846Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1510915933:31818..31846TCONS_00025092-exon-sc0000521-1510915933:31818..31846Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1575043694:31818..31846TCONS_00025092-exon-sc0000521-1575043694:31818..31846Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1491911889:31978..32019TCONS_00025092-exon-sc0000521-1491911889:31978..32019Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1510915933:31978..32019TCONS_00025092-exon-sc0000521-1510915933:31978..32019Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1575043694:31978..32019TCONS_00025092-exon-sc0000521-1575043694:31978..32019Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1491911889:32427..32545TCONS_00025092-exon-sc0000521-1491911889:32427..32545Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1510915933:32427..32545TCONS_00025092-exon-sc0000521-1510915933:32427..32545Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1575043694:32427..32545TCONS_00025092-exon-sc0000521-1575043694:32427..32545Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1491911889:33448..34833TCONS_00025092-exon-sc0000521-1491911889:33448..34833Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1510915933:33448..34833TCONS_00025092-exon-sc0000521-1510915933:33448..34833Clytia hemisphaericaexon
TCONS_00025092-exon-sc0000521-1575043694:33448..34833TCONS_00025092-exon-sc0000521-1575043694:33448..34833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000521supercontigsc0000521:30403..34833 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.131262	0	0.176785	0	0.219726	0	0.777133	0	0.304184	3.27349	1.25033	3.37644	0.715246	0	0	0	0	0	0	0	0	0.27032	0.288189	0	0	0	0.0535998
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025092 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top