TCONS_00025098 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00025098
Unique Name	TCONS_00025098
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	830

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000521:47271..55801+

transcript sequence

>TCONS_00025098 ID=TCONS_00025098|Name=TCONS_00025098|organism=Clytia hemisphaerica|type=transcript|length=830bp
CAACCCTTTTTGGAGTTTTGAGAAGGAcaataaaaattgtttgatgGAGA
ACAATTTATGGATATCGTTGTACCAACTACAAATATTCCAACCCTTTACC
CAACAAAACTATCGACAAGCAAACCAGATCAGTGTGACCTTTCAATGAAT
GACAAGAAAGATTGTGCATATTCTGGGATCGACGAAACAGGTTGCATTGG
AAGAAATTGTTGTTGGAACGCAATCCAAGGTCATAAGTATTGCTATCAAC
CAAAAGGTGAATGTGAGGTACCAGATGCAAACAAAATCAACTGTGGCCAT
GATACAATAAAAGACTCTGAATGTTATGCGAGAGGATGTTGCTGGCATCC
AAAATCAGGATATCATTATTGCTTTAATCCGAAAAGGAATACAACTctaa
caacaacaacgacaacgacGACGACAACAGCAGTACTAATACCAAAGACC
ACTACATCTACTACTACATCTACAACGACTTCAACAACGACCTCATCAAA
GATAACATCAACACTGAGATCAACAGCAATCGCTTCAACAGGCATGAAAA
CAACtcacattccaacaacttcacAGAGAACTAAAATCTCAACAATAATA
TCCACCGATCGATCAAAAACAACTCCAAGAAAAAATAATACATCCACAAT
ATTTTCGATACCGAAACGCACTACATCAGCAacctcaaaaacaaaattta
ccacAGTAGACAGCTCCACAAATGCAAACCAAGGAAAAAGTACAGATGTT
AGTTCCATTAGTTATATCATTCATGGTTGTCCTGTTGATTGTCGTTAGTG
TGGTCTGTTTCATTGTGAGAAGAAGAAGGA

Run BLAST on NCBI

transcript from alignment at sc0000521:47271..55801+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00025098 ID=TCONS_00025098|Name=TCONS_00025098|organism=Clytia hemisphaerica|type=transcript|length=8531bp|location=Sequence derived from alignment at sc0000521:47271..55801+ (Clytia hemisphaerica)
CAACCCTTTTTGGAGTTTTGAGAAGGAcaataaaaattgtttgatggtaa
gttttttttcaaatcgttTGACAATAAGCTTCTCTATTGATATAAATCTT
AACCACGAGTATGATAGTGTATAAATATGCACTCTGATGACATACATATA
AGGATTCTATTCAACGTATATTCAGTGAAGTAATTATGGCAATTATCCAG
GATCTTGGATGAATGGCCCTACCATTTAAATCATAAGTAAGAAATATAGA
AAAGACTCTGTCAACGCACCTCAGTtgttagcgagtttatgtatgtgtgt
ttttcagcgacggagacggtaaggttctaatttgagtagatcctgaccag
ctgaggacgacggtaaatcagcacttttaccgtcctcgattttgcggggc
ggaattgctagtttttccaaatcgcttcagtcactttaccgtcctcaaaa
gggcaaatacataaactcgttacttgacctcggacGGTGCTTATCAGTGC
AGCCCTGACTGGTCGTTATTGTATTAATGTGCTTCACTATCTCCATTTAT
TGGAGCTGCTTATttggtcgtggcttcttcaaaAAGACGGAAGACACATC
TGAACTTATTTCGTATATTTCAGTCTCTAGTTCGTaactacagaccagac
tatattaagagaaaatcataAAAGAGTACTTGTTTCAAGCTTTAACCCTA
GCCCTAACTAATAATAACCCAATtactagccaatctgatacccaaccaca
cccaaaccacactcATACCCAACCCTATCAGGTCgtctgcaggtcctgac
actttTCTCGCATGCTGGATccgaaaaatatatttgtgtctttcgctttt
atgaagaagccttcacctgCTTACTTTGTGTATTCTTGTTTACTCTGTTC
ATCATTTAAACCTTTTGATAACAGTGCATTGACAAGAATGGAAGACCTTG
CGGAACTCTTGCTTACCCTGGATCAATCCTCAAATTCACAATCGATTGTC
GAGATAATAAAAATAATGTTACACAAAATATTCTCTTGATTAAAATAAAT
GGTAAGCCTATCAAAATACATTATAGAACGGATTGCAATGGTAATTCTAG
ACTTGATTTTAGATCACTTAGAACCATGAACCATTTCACAATCAGAACCC
ATAAACTCATCTTATTATGTGTTACCATTGATAAAAACTCATTTTCCCGT
AATTTCGAAGGTGAAAAATTTCAGATTAATTCATTGGGTGAttgatttct
attttaaatAAATGTGCAGGTTAAAATTTTTCATCACTTTGAATGATGTT
CATGAAAGCTTACAAGATAAAAATTCAGCTTCTATACGCTGTAATGCAAA
ATATGGTGTAAGAATTCCTTTCCAAATGGCtcaataaaactaaaatttac
ttgtCTTTACTTTAAGGAGAACAATTTATGGATATCGTTGTACCAACTAC
AAATATTCCAACCCTTTACCCAACAAAACTATCGACAAGCAAACCAGGTA
AGTCTTCGGAAGATTATGATTGTTGTTCGTCGTTAAAAAAATCGTTAGTG
AAAGAATATTCGCCAGCAAAAAATATTCGTAGGTAAGTGAAATCCGTCAT
TTGCCAAAAAGAATTCCTCAAGTAATGTCGGTTTTTTAGAGGGATTACAG
GCTGGAAAATACAAATGAAATTATTGCATTTTCTTCAGTTTCTTCTCTCG
TAAGTATAGCATAAAAGACTTATTTTTCATAGTTTTCTAATAACAACCGC
CTCTCCGACCGGATTGTGTGGATGTCCTGCGGGGCTAAGCATAGTCTGCG
TTTTCACTGGTTAAGATAAGTTTTTAGAAACGTCATAATTTAATTATTTA
ATGTTTTAAAGATTTCATACAGGCTAGGGTGAAATACAGACTACGCTAAA
CTAGCATGCATGCCAGTTGAACACTAAAACGATTGTATgtgggaaaagtg
agcgtaggagttaggtaaccgtagaaagaaaatttgtcaaaaggAAGGGT
TGAGAAATTCCCTTATCAGGACACTCTCTGCAGCCTTTCCTCGTTCTTCT
ATAAGGCTTCTGATTTAGCAAACGCCCACCGCCAATATGCTTCCGCCCTC
TGACATGTTTAATTAATAACCTGGTTGACTAGTCTTCGAGCTTACGAAAT
TCGCAGGATATCCGCAAACTCCGGTAGAGGTTTGCGGATGATTAGAAAGA
TATTTCATAAAGCTTGATTGAGGCAAGACAAGAGTTCGCAGAAATCCCAA
GAGCCTCTCATAATATAATCAAATAATATGTCAAAGTTTTACTAGGTTTT
TATAGAGagtaactttttaatttttaaaaaactgtttaaaGATCAGTGTG
ACCTTTCAATGAATGACAAGAAAGATTGTGCATATTCTGGGATCGACGAA
ACAGGTTGCATTGGAAGAAATTGTTGTTGGAACGCAATCCAAGGTCATAA
GTATTGCTATCAACCAAAAGGTAATTTGAACCGTTCTCACcataaataat
tttcaaatcttttgtttACCCTAATCTTTCCCCCTTTTACCAGGAGGTCT
TCACCCATTATCACTATAACTCATTTCAAGAGCTTTATGAGAACCTAAAA
CAATTTCTGACTGTTTTTACCACATTTTTTTACCCGTAATATCCGTCAGG
AAGGAGTTTATGGCGAAAATCCTTCATAAAACCCAATTAAAATCACGTAA
AATCCGCTAAATCTAAAAGATTCACAAAATTACTTAGAATGCTCATCGAA
TCCCAAGTAGGGTCGCAATAACatcaactttaaaaaatcaattccGTGTC
GGATACCTTTTTAGGGGAATTGGggaaaaaagtggaaaattttgaattta
gcaaaattcaagaaaaacgagtcccacgtaagttccatttttcgaacctc
agcggaacAACACCATAAGTCGGCAACATCCTCCCGAACTTCTCTTTTCC
TCTGGTATGAATAAAACCCCTTCTATTCTCATAAATTCAcctaaaatttt
tttacaacAGCTTCTTACATAGaagatgctatcgtccgtataatatatta
ctagatatagcttacactaagtgccacctaataataataaataaaatata
taataatatataaaatataagcataggttttggttacatgaagaaataat
gttaagattttctttttttctaaaaataactaTGTAAAGAATATATctaa
ataaattaaaatgattggttagttttaaaaatgacaatctaaacaatcca
tccaaataaaaatgatgggttTAAGCAGTTTTTCTATATGCAATAAATCT
ACATAAgtacaaatcacaacaatgactcctttataactactttaaactgc
atcccattaaacgaaACCTCCCCAATTTCTTGCTGGTTATCccgtaaaat
atatataggaaaaagattccagaaaagtatcaagaaACTTAGTgtggaaa
tgggaatcttatacaaaacaacggtacactggagtttttaatgattcaaa
atgaaaatcctgattagcaaaaggtgtatcaagatcggtgaagttcgACA
TTGAAGCttcatttattaccttgttgttGTTGCCCATttccgacggctta
ttagcagacgcccacacTAAAAAGCTTAAAGGGCAGGCAAATATAAATCA
TCCCATCGGATCAGCAATAActggaaccatttgagctacaaaaacattga
ttgaacttGATCGAACTGCGATATACTGGGATATAACTTtaatcaaactg
aagattttctggTAAAattcgattactgttcgatcaggttcggtaatcaa
acaccTAGCTAACCGCTTGATTTcgttcgatgaaatttgatggttcgata
acaaaaatcagtttgatagggttcggttgacatcgcctgggctggcatcg
gggaggaaaagctggaacttttttcttaaaCCAAACACATTGATTGAAAA
CCAATCAAACCCTATCAGataaaaactgtcatcaaacttataaaatcaaa
ctaatcaaaaaattCTCTTACCAAATCAGGCatggtaatcgaacagctac
cGTTTGATTTCGTTGGATAGTTCGACAGTTTGATtacaaaaaatgatttc
aattgacatgatttctaggCTAGGAAATAAAATATGTGGaaatacttgct
aaaactgactgtttgtcacaaccaGGTTACAACTGGTTAACATTTAACAC
TTAattatctggtgaaaaaagggaaaaaaagatcgtaaaagatcatacct
gtgctgtttgtagtttcgGTGAAGAAGAGGGCTTTTTGTGCCTTTgagtt
gttgtggaaaattaactctttttgtactatttactgagcattatcaattt
attggtgcattcactaactacacaaacataaaatacttggtagtaaacga
ataataaacctctttaaatactctgcaaaagaccagaaaacatgataaaa
attacagcagcaagtttcaaaagcatgtgcaatcaagcagACATTAAAAA
tgctcacgatgaatgtttacaaaggcttggttacacttcttacactagcg
tattttaattattaagaaaagcgctgttttttatctttgtgaNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNacaaaaaaaaaaaaaagacggcgAAAATTTTTACCATC
TGCACAACctcgtgaagctatgaagccaCCTATGCTCGCTGTGCTCGCTC
GGTGGcaattatgatataacatagtttgtatattataaaacgtaatatgc
tGTGTTTTTACAACAGCTACCTCCGAAAAAAACTCCCGTCTTCaccacgt
ttgttcctcttagatgaaacttgCCTTAggctatagcatagtctacttCT
TACACAGCGACAATATATTGAAgactaaaaaattatttttatctagATAT
CTAGAGAActaaataaaagattttttattcatGAAGAGCTTTTaacctac
aatcatggtcgaaaaaTATTGAGCGTATTTTCACGTTTTTCAGATTGTAT
GcattgaaatatattgagaattccggttattttaacgttttaaaGTTCTG
gcaagaaagtcgattttgggctctTTAATCCAatcgaaaatttcaatttg
ggaggggttggcagacttccaggctatattttgagccttattagactatt
tttgaacttttggatcctcacatcTTAAGTCTAGccttaaaactcagagt
taaaaccattgagtttcaagcccgaagggctagaggtcaatctctttggt
aggatttgaagccaacaaatcctaccaaagttgtgcggccttgagcgacc
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNgcgacccgcctggtttttacaca
aatgacagattgaaactaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgaaaaata
tatcactcgaaaacaaaggaattgctagattcaatccgtcataaaaaata
cggcgcatattttaaggcttcaatttttcttgcctgagaaaggttagaga
ttgacctctagcccttcgggcttgaaactcaatggttaaaactctaccct
tcgagcctattttagagcacttacaaatcgattgtggtttcaaaaaatga
atttcccttttttctcaaatattatgaccttggtTGTAGGTGAATGTGAG
GTACCAGATGCAAACAAAATCAACTGTGGCCATGATACAATAAAAGACTC
TGAATGTTATGCGAGAGGATGTTGCTGGCATCCAAAATCAGGATATCATT
ATTGCTTTAATCCGAAAAGTAAGTCACCTTTATAAATGTTAATACAGATC
ATGAGTGAGTATTAAAGCTTCAATACCACGTCGAATAGATCATTACAGCA
AGTAGAAATGATTCGAAATTGTCTAGATGGCTAGATGGTCAGTATCTATC
actgataaaaatttcaagtcaaaagcttaATTAGTTCCCGAGTTCCTGAG
TTCTGGCAGGTGGTCAAAGTGTATTTTACAGATGagtttgcaaattttca
aatattcatgggaacgaattttttctgttacaagtttcttttatttgaca
aatcagcCTTCAGGATCAAGTTTCAGTTACATCGAAGGAGTCAATCACTC
AATACATGATTTGGGTCAAGTTTATAAAATATCAACCAGATAGATGACTG
GTATTTACCACTGATCAGAATTTCAAGGCTATAGCGcttgtcaatcttga
gattttaagggGGGCTCGAGACCCCAGTCCCCAAGATGCTTCCCTAAGTA
GcaaaataggaagatgctcgaagggtcAAATGAGCCATGCCCTTTAAAGC
TTCTAACTTTACTTACCAAGGGAATACAACTctaacaacaacaacgacaa
cgacGACGACAACAGCAGTACTAATACCAAAGACCACTACATCTACTACT
ACATCTACAACGACTTCAACAACGACCTCATCAAAGATAACATCAACACT
GAGATCAACAGCAATCGCTTCAACAGGCATGAAAACAACtcacattccaa
caacttcacAGAGAACTAAAATCTCAACAATAATATCCACCGATCGATCA
AAAACAACTCCAAGAAAAAATAATACATCCACAATATTTTCGATACCGAA
ACGCACTACATCAGCAacctcaaaaacaaaatttaccacAGTAGACAGCT
CCACAAATGCAAACCAAGGAAAAAGTACAGGTATCTTTAACtttgttttt
agatttccaCTTTGGTTAGGTTTCTCGATATCATCCGTTGATTCTTTGTT
TTGCGTTAGCTCAGCATCAACATTCTTAATTTTTATTATCAGTGGATCAt
atataccgtgaaaagcacaggtcaaaatcatatatcgacgctgtgccgac
caatccagcttctattcagcgcgcaatcaatgaagagaaaagtaaccatg
acaacCATCCAAGATCTGTGATGaaattcaaagttgatatttttattccc
gtcgttgaaaacacaactcaaaaatgtcatcaatgcttttttaaaagagt
cagtgatagagaatcgtaacataaagtttgtctattatttcgattcaatt
aaagtgacatttccataattaatagttgagtaattactgttatacatttg
gggatcatgtaaaagatttctttcgaaagaaactcatttcaaattacaat
tggaggtttctggggtattcgtaaatagtaaactgcatactgatacagtc
tgctagacaataatatggtaatatttgctcttcatctttgatttttctac
agtgattagattgacacatgcgcgataaaatttctattattggtcttcag
aggttgaaatattctcaacctctgatactcagggtagatCATATAGTGTG
TGGTTGTGTTCTTACCACCGAGCGTACAGTTTAAATTCCTTTGGGATACA
CTTTCTCGAGCGTATCCGCCAATTACCGCGTGGACATTTTTTGCCCACTT
TATCCCACTTTAACCATCCCAgcccttttttcgcacctatagacaataga
aaaaggtgtaaaaaaggattggattgagtttagggggataattaaatgaT
TAAATGACACACGCCTGACCACgcgactacggtcaaaaaggtgtgtTGAG
ACAATGATTTGAACTTTTTCATCACTCGTATGTTTTCTAGTGTCATCAGC
TCAAAGAGATTCAACAAAGGATACGGTATGAGGTTTTGATCAAGAAGTAC
TTTTGCAATTTATAGAAATCTCTAAACAACCATAAACAGTGATTTTCTCa
ggttgcttatatcttcttcagcaagagAGTGCTTGACCTGGAGGAAGCAT
TTTACACAATAAATTTCAATCGAGATTAGAATTTTCTGCTACTCAAATTT
TAGATCTAGAGTTGAAGCTCTCTGATTCGACATTCTACAATTCGATACGC
TCGTATATTCGATAACATTGAAAGTAATTTtgaacaagaaactctcataa
acgacgatCTTCTATTCGATATACTCcctaattcgatgaaaatctaattc
ccCCTGAAAATCAAACTGGAGAGCATCAATTGTATcagtctttttttaaa
tattaacaTGACAGACCTAATCATATAAATCCTGTCTTATTTGTAGATGT
TAGTTCCATTAGTTATATCATTCATGGTTGTCCTGTTGATTGTCGTTAGT
GTGGTCTGTTTCATTGTGAGAAGAAGAAGGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_014114	XLOC_014114	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000521	supercontig	sc0000521:47271..55801 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	4.02822e-07	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2.11195	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00025098 vs. Swiss-Prot (Human)

BLAST of TCONS_00025098 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00025098 (transcript) - C. hemisphaerica