TCONS_00025100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025100
Unique NameTCONS_00025100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025100 ID=TCONS_00025100|Name=TCONS_00025100|organism=Clytia hemisphaerica|type=transcript|length=834bp
GGAAGACCTTGCGGAACTCTTGCTTACCCTGGATCAATCCTCAAATTCAC
AATCGATTGTCGAGATAATAAAAATAATGTTACACAAAATATTCTCTTGA
TTAAAATAAATGGAGAACAATTTATGGATATCGTTGTACCAACTACAAAT
ATTCCAACCCTTTACCCAACAAAACTATCGACAAGCAAACCAGATCAGTG
TGACCTTTCAATGAATGACAAGAAAGATTGTGCATATTCTGGGATCGACG
AAACAGGTTGCATTGGAAGAAATTGTTGTTGGAACGCAATCCAAGGTCAT
AAGTATTGCTATCAACCAAAAGGTGAATGTGAGGTACCAGATGCAAACAA
AATCAACTGTGGCCATGATACAATAAAAGACTCTGAATGTTATGCGAGAG
GATGTTGCTGGCATCCAAAATCAGGATATCATTATTGCTTTAATCCGAAA
AGGAATACAACTctaacaacaacaacgacaacgacGACGACAACAGCAGT
ACTAATACCAAAGACCACTACATCTACTACTACATCTACAACGACTTCAA
CAACGACCTCATCAAAGATAACATCAACACTGAGATCAACAGCAATCGCT
TCAACAGGCATGAAAACAACtcacattccaacaacttcacAGAGAACTAA
AATCTCAACAATAATATCCACCGATCGATCAAAAACAACTCCAAGAAAAA
ATAATACATCCACAATATTTTCGATACCGAAACGCACTACATCAGCAacc
tcaaaaacaaaatttaccacAGTAGACAGCTCCACAAATGCAAACCAAGG
AAAAAGTACAGTGTCATCAGCTCAAAGAGATTCA
Run BLAST on NCBI

transcript from alignment at sc0000521:48210..55283+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025100 ID=TCONS_00025100|Name=TCONS_00025100|organism=Clytia hemisphaerica|type=transcript|length=7074bp|location=Sequence derived from alignment at sc0000521:48210..55283+ (Clytia hemisphaerica)
GGAAGACCTTGCGGAACTCTTGCTTACCCTGGATCAATCCTCAAATTCAC
AATCGATTGTCGAGATAATAAAAATAATGTTACACAAAATATTCTCTTGA
TTAAAATAAATGGTAAGCCTATCAAAATACATTATAGAACGGATTGCAAT
GGTAATTCTAGACTTGATTTTAGATCACTTAGAACCATGAACCATTTCAC
AATCAGAACCCATAAACTCATCTTATTATGTGTTACCATTGATAAAAACT
CATTTTCCCGTAATTTCGAAGGTGAAAAATTTCAGATTAATTCATTGGGT
GAttgatttctattttaaatAAATGTGCAGGTTAAAATTTTTCATCACTT
TGAATGATGTTCATGAAAGCTTACAAGATAAAAATTCAGCTTCTATACGC
TGTAATGCAAAATATGGTGTAAGAATTCCTTTCCAAATGGCtcaataaaa
ctaaaatttacttgtCTTTACTTTAAGGAGAACAATTTATGGATATCGTT
GTACCAACTACAAATATTCCAACCCTTTACCCAACAAAACTATCGACAAG
CAAACCAGGTAAGTCTTCGGAAGATTATGATTGTTGTTCGTCGTTAAAAA
AATCGTTAGTGAAAGAATATTCGCCAGCAAAAAATATTCGTAGGTAAGTG
AAATCCGTCATTTGCCAAAAAGAATTCCTCAAGTAATGTCGGTTTTTTAG
AGGGATTACAGGCTGGAAAATACAAATGAAATTATTGCATTTTCTTCAGT
TTCTTCTCTCGTAAGTATAGCATAAAAGACTTATTTTTCATAGTTTTCTA
ATAACAACCGCCTCTCCGACCGGATTGTGTGGATGTCCTGCGGGGCTAAG
CATAGTCTGCGTTTTCACTGGTTAAGATAAGTTTTTAGAAACGTCATAAT
TTAATTATTTAATGTTTTAAAGATTTCATACAGGCTAGGGTGAAATACAG
ACTACGCTAAACTAGCATGCATGCCAGTTGAACACTAAAACGATTGTATg
tgggaaaagtgagcgtaggagttaggtaaccgtagaaagaaaatttgtca
aaaggAAGGGTTGAGAAATTCCCTTATCAGGACACTCTCTGCAGCCTTTC
CTCGTTCTTCTATAAGGCTTCTGATTTAGCAAACGCCCACCGCCAATATG
CTTCCGCCCTCTGACATGTTTAATTAATAACCTGGTTGACTAGTCTTCGA
GCTTACGAAATTCGCAGGATATCCGCAAACTCCGGTAGAGGTTTGCGGAT
GATTAGAAAGATATTTCATAAAGCTTGATTGAGGCAAGACAAGAGTTCGC
AGAAATCCCAAGAGCCTCTCATAATATAATCAAATAATATGTCAAAGTTT
TACTAGGTTTTTATAGAGagtaactttttaatttttaaaaaactgtttaa
aGATCAGTGTGACCTTTCAATGAATGACAAGAAAGATTGTGCATATTCTG
GGATCGACGAAACAGGTTGCATTGGAAGAAATTGTTGTTGGAACGCAATC
CAAGGTCATAAGTATTGCTATCAACCAAAAGGTAATTTGAACCGTTCTCA
CcataaataattttcaaatcttttgtttACCCTAATCTTTCCCCCTTTTA
CCAGGAGGTCTTCACCCATTATCACTATAACTCATTTCAAGAGCTTTATG
AGAACCTAAAACAATTTCTGACTGTTTTTACCACATTTTTTTACCCGTAA
TATCCGTCAGGAAGGAGTTTATGGCGAAAATCCTTCATAAAACCCAATTA
AAATCACGTAAAATCCGCTAAATCTAAAAGATTCACAAAATTACTTAGAA
TGCTCATCGAATCCCAAGTAGGGTCGCAATAACatcaactttaaaaaatc
aattccGTGTCGGATACCTTTTTAGGGGAATTGGggaaaaaagtggaaaa
ttttgaatttagcaaaattcaagaaaaacgagtcccacgtaagttccatt
tttcgaacctcagcggaacAACACCATAAGTCGGCAACATCCTCCCGAAC
TTCTCTTTTCCTCTGGTATGAATAAAACCCCTTCTATTCTCATAAATTCA
cctaaaatttttttacaacAGCTTCTTACATAGaagatgctatcgtccgt
ataatatattactagatatagcttacactaagtgccacctaataataata
aataaaatatataataatatataaaatataagcataggttttggttacat
gaagaaataatgttaagattttctttttttctaaaaataactaTGTAAAG
AATATATctaaataaattaaaatgattggttagttttaaaaatgacaatc
taaacaatccatccaaataaaaatgatgggttTAAGCAGTTTTTCTATAT
GCAATAAATCTACATAAgtacaaatcacaacaatgactcctttataacta
ctttaaactgcatcccattaaacgaaACCTCCCCAATTTCTTGCTGGTTA
TCccgtaaaatatatataggaaaaagattccagaaaagtatcaagaaACT
TAGTgtggaaatgggaatcttatacaaaacaacggtacactggagttttt
aatgattcaaaatgaaaatcctgattagcaaaaggtgtatcaagatcggt
gaagttcgACATTGAAGCttcatttattaccttgttgttGTTGCCCATtt
ccgacggcttattagcagacgcccacacTAAAAAGCTTAAAGGGCAGGCA
AATATAAATCATCCCATCGGATCAGCAATAActggaaccatttgagctac
aaaaacattgattgaacttGATCGAACTGCGATATACTGGGATATAACTT
taatcaaactgaagattttctggTAAAattcgattactgttcgatcaggt
tcggtaatcaaacaccTAGCTAACCGCTTGATTTcgttcgatgaaatttg
atggttcgataacaaaaatcagtttgatagggttcggttgacatcgcctg
ggctggcatcggggaggaaaagctggaacttttttcttaaaCCAAACACA
TTGATTGAAAACCAATCAAACCCTATCAGataaaaactgtcatcaaactt
ataaaatcaaactaatcaaaaaattCTCTTACCAAATCAGGCatggtaat
cgaacagctaccGTTTGATTTCGTTGGATAGTTCGACAGTTTGATtacaa
aaaatgatttcaattgacatgatttctaggCTAGGAAATAAAATATGTGG
aaatacttgctaaaactgactgtttgtcacaaccaGGTTACAACTGGTTA
ACATTTAACACTTAattatctggtgaaaaaagggaaaaaaagatcgtaaa
agatcatacctgtgctgtttgtagtttcgGTGAAGAAGAGGGCTTTTTGT
GCCTTTgagttgttgtggaaaattaactctttttgtactatttactgagc
attatcaatttattggtgcattcactaactacacaaacataaaatacttg
gtagtaaacgaataataaacctctttaaatactctgcaaaagaccagaaa
acatgataaaaattacagcagcaagtttcaaaagcatgtgcaatcaagca
gACATTAAAAAtgctcacgatgaatgtttacaaaggcttggttacacttc
ttacactagcgtattttaattattaagaaaagcgctgttttttatctttg
tgaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNacaaaaaaaaaaaaaagacggcgAAAA
TTTTTACCATCTGCACAACctcgtgaagctatgaagccaCCTATGCTCGC
TGTGCTCGCTCGGTGGcaattatgatataacatagtttgtatattataaa
acgtaatatgctGTGTTTTTACAACAGCTACCTCCGAAAAAAACTCCCGT
CTTCaccacgtttgttcctcttagatgaaacttgCCTTAggctatagcat
agtctacttCTTACACAGCGACAATATATTGAAgactaaaaaattatttt
tatctagATATCTAGAGAActaaataaaagattttttattcatGAAGAGC
TTTTaacctacaatcatggtcgaaaaaTATTGAGCGTATTTTCACGTTTT
TCAGATTGTATGcattgaaatatattgagaattccggttattttaacgtt
ttaaaGTTCTGgcaagaaagtcgattttgggctctTTAATCCAatcgaaa
atttcaatttgggaggggttggcagacttccaggctatattttgagcctt
attagactatttttgaacttttggatcctcacatcTTAAGTCTAGcctta
aaactcagagttaaaaccattgagtttcaagcccgaagggctagaggtca
atctctttggtaggatttgaagccaacaaatcctaccaaagttgtgcggc
cttgagcgacccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgcgacccgcctg
gtttttacacaaatgacagattgaaactaaNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNcgaaaaatatatcactcgaaaacaaaggaattgctagattcaatccgt
cataaaaaatacggcgcatattttaaggcttcaatttttcttgcctgaga
aaggttagagattgacctctagcccttcgggcttgaaactcaatggttaa
aactctacccttcgagcctattttagagcacttacaaatcgattgtggtt
tcaaaaaatgaatttcccttttttctcaaatattatgaccttggtTGTAG
GTGAATGTGAGGTACCAGATGCAAACAAAATCAACTGTGGCCATGATACA
ATAAAAGACTCTGAATGTTATGCGAGAGGATGTTGCTGGCATCCAAAATC
AGGATATCATTATTGCTTTAATCCGAAAAGTAAGTCACCTTTATAAATGT
TAATACAGATCATGAGTGAGTATTAAAGCTTCAATACCACGTCGAATAGA
TCATTACAGCAAGTAGAAATGATTCGAAATTGTCTAGATGGCTAGATGGT
CAGTATCTATCactgataaaaatttcaagtcaaaagcttaATTAGTTCCC
GAGTTCCTGAGTTCTGGCAGGTGGTCAAAGTGTATTTTACAGATGagttt
gcaaattttcaaatattcatgggaacgaattttttctgttacaagtttct
tttatttgacaaatcagcCTTCAGGATCAAGTTTCAGTTACATCGAAGGA
GTCAATCACTCAATACATGATTTGGGTCAAGTTTATAAAATATCAACCAG
ATAGATGACTGGTATTTACCACTGATCAGAATTTCAAGGCTATAGCGctt
gtcaatcttgagattttaagggGGGCTCGAGACCCCAGTCCCCAAGATGC
TTCCCTAAGTAGcaaaataggaagatgctcgaagggtcAAATGAGCCATG
CCCTTTAAAGCTTCTAACTTTACTTACCAAGGGAATACAACTctaacaac
aacaacgacaacgacGACGACAACAGCAGTACTAATACCAAAGACCACTA
CATCTACTACTACATCTACAACGACTTCAACAACGACCTCATCAAAGATA
ACATCAACACTGAGATCAACAGCAATCGCTTCAACAGGCATGAAAACAAC
tcacattccaacaacttcacAGAGAACTAAAATCTCAACAATAATATCCA
CCGATCGATCAAAAACAACTCCAAGAAAAAATAATACATCCACAATATTT
TCGATACCGAAACGCACTACATCAGCAacctcaaaaacaaaatttaccac
AGTAGACAGCTCCACAAATGCAAACCAAGGAAAAAGTACAGGTATCTTTA
ACtttgtttttagatttccaCTTTGGTTAGGTTTCTCGATATCATCCGTT
GATTCTTTGTTTTGCGTTAGCTCAGCATCAACATTCTTAATTTTTATTAT
CAGTGGATCAtatataccgtgaaaagcacaggtcaaaatcatatatcgac
gctgtgccgaccaatccagcttctattcagcgcgcaatcaatgaagagaa
aagtaaccatgacaacCATCCAAGATCTGTGATGaaattcaaagttgata
tttttattcccgtcgttgaaaacacaactcaaaaatgtcatcaatgcttt
tttaaaagagtcagtgatagagaatcgtaacataaagtttgtctattatt
tcgattcaattaaagtgacatttccataattaatagttgagtaattactg
ttatacatttggggatcatgtaaaagatttctttcgaaagaaactcattt
caaattacaattggaggtttctggggtattcgtaaatagtaaactgcata
ctgatacagtctgctagacaataatatggtaatatttgctcttcatcttt
gatttttctacagtgattagattgacacatgcgcgataaaatttctatta
ttggtcttcagaggttgaaatattctcaacctctgatactcagggtagat
CATATAGTGTGTGGTTGTGTTCTTACCACCGAGCGTACAGTTTAAATTCC
TTTGGGATACACTTTCTCGAGCGTATCCGCCAATTACCGCGTGGACATTT
TTTGCCCACTTTATCCCACTTTAACCATCCCAgcccttttttcgcaccta
tagacaatagaaaaaggtgtaaaaaaggattggattgagtttagggggat
aattaaatgaTTAAATGACACACGCCTGACCACgcgactacggtcaaaaa
ggtgtgtTGAGACAATGATTTGAACTTTTTCATCACTCGTATGTTTTCTA
GTGTCATCAGCTCAAAGAGATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014114XLOC_014114Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025100-exon-sc0000521-1491911889:48210..48321TCONS_00025100-exon-sc0000521-1491911889:48210..48321Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1510915933:48210..48321TCONS_00025100-exon-sc0000521-1510915933:48210..48321Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1575043694:48210..48321TCONS_00025100-exon-sc0000521-1575043694:48210..48321Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1491911889:48687..48767TCONS_00025100-exon-sc0000521-1491911889:48687..48767Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1510915933:48687..48767TCONS_00025100-exon-sc0000521-1510915933:48687..48767Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1575043694:48687..48767TCONS_00025100-exon-sc0000521-1575043694:48687..48767Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1491911889:49612..49740TCONS_00025100-exon-sc0000521-1491911889:49612..49740Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1510915933:49612..49740TCONS_00025100-exon-sc0000521-1510915933:49612..49740Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1575043694:49612..49740TCONS_00025100-exon-sc0000521-1575043694:49612..49740Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1491911889:53260..53388TCONS_00025100-exon-sc0000521-1491911889:53260..53388Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1510915933:53260..53388TCONS_00025100-exon-sc0000521-1510915933:53260..53388Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1575043694:53260..53388TCONS_00025100-exon-sc0000521-1575043694:53260..53388Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1491911889:53941..54300TCONS_00025100-exon-sc0000521-1491911889:53941..54300Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1510915933:53941..54300TCONS_00025100-exon-sc0000521-1510915933:53941..54300Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1575043694:53941..54300TCONS_00025100-exon-sc0000521-1575043694:53941..54300Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1491911889:55261..55283TCONS_00025100-exon-sc0000521-1491911889:55261..55283Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1510915933:55261..55283TCONS_00025100-exon-sc0000521-1510915933:55261..55283Clytia hemisphaericaexon
TCONS_00025100-exon-sc0000521-1575043694:55261..55283TCONS_00025100-exon-sc0000521-1575043694:55261..55283Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000521supercontigsc0000521:48210..55283 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	1.97039	0.000114969	0	0	0	0	0	0	0	1.31232e-07	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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