TCONS_00025259 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025259
Unique NameTCONS_00025259
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2187

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025259 ID=TCONS_00025259|Name=TCONS_00025259|organism=Clytia hemisphaerica|type=transcript|length=2187bp
TGATATCAACTGAACAGTTTGAAGCATGGGTTGGAAAACGAAAACATTGA
TTTTCCTGCTACCAATAATATCGTATTATGTTTACAAATTTGttaaagaa
aactttttgatcTTTGTTATAATCACGAGTCAGATTTACCCAAGACTTCC
AATCGAGAATTTCGCAAATTTGAATCCTGACATTGCAGATTTTGCGACAG
GAGATGATCAAATAGTTGATGAATATGATTTTGTGGTTATCGGTGCAGGA
TCTGCAGGAGCTGTTGTTGCCAATCGTTTAAGTGAAAACAAATCATGGAA
AATTCTTCTGCTCGAAGCTGGTGGTGGGGAAACAATGTTGACAGAAATGC
CAGGCGGCTTTATACACAATGTCAACTCGCCATTAGATTGGGGTTACAAG
GCAGAGCCTTCCAAGGATAAGTTAGTTTCATCTGCAATGAAAGATGGTCA
GGTTTTGTATCCCAGAGGAAAGTTACTTGGAGGATCCAGTTCTATAAACG
CACTTGTTTATGTGAGGGGTAACAAGAAAGACTACGATGATTGGGCAAAA
CAAGGAAATCCAGGATGGAGTTATGACGAGGTATTACCATATTTCTTAAA
ATCGGAAGATCAAACCGATGAGAGGTTGGCAATATCAAAGTATCATGCCA
CAGGAGGTCCATTGAAGATTGAAACAGCAGAAGCACTCGAATTCTGGCAA
AAGATGATGGAAGGATGCACCAAAATCTTGCCCTTCAACCCTGACCATAA
TGGAGAACGACAGACTGGATGCTCTTATTTTCAGAACACAAAAGGGAATG
GTCTTCGATACAGTACATCAAAAGCTTACCTCAAACCCAAGAGATCAAAT
CTTCACGTCAGTCCATTTTCACATGTTCAGAAGCTTTTGATTGACCCTGA
AACGAAAACAGCCAAAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGA
TAGTCAGAGCCAAAAAGGAAGTTATCTTGTCTGCTGGAGCTGTCGCATCT
CCCCAGATCTTAATGTTATCAGGAGTTGGTCCAAAGGAGGAATTGGAAAA
ACATGGAATTCCGATCATCAAAGAACTTCAAGTTGGATACAATTTACAAG
ATCATGTCAGCGTCTTAACGCACTTGGTCTTCAATGAATCAATATCGTGG
CCAGTTGAaagAATCATTAAATACGACACCTACAAGAAATATCATGATAG
CCGTGAAGGTATTCTTGGTTCTGGAGGTGTCTTCACATCCTTTCTTCCCA
CAACTGAAGAATCAAAGCGAACCGATTACCCAGAGATGCAGATCTTTGGA
TTACCACACCTGGCATCAGCAACAGATTATAAGGATGTGTTCAATTTTGA
TGAGGAGTATTGGACCAATGTTTACCAGCCTGGGTTGGAAGGACAAGAGG
GATATTCTTATTTCAATTGTCTCTTAAGACCAAAGAGCAGAGGGCACATC
AAATTAAGAAGCAATGACCCTGAAGACCATCCACTCATCATACCCAACTA
TTTCGACAACGAAGAAGATCTTATACCTTTTGTCGAAGCTTtcaaatttg
gaaagaaatttgCTGCTGCACTTGACAAGTACAATGCCACGGTTCCTGAT
TTGAAAGATCCAGTTTGTGAAAAATTTGCACAAGACTCAGAAGATGATTA
CATGAAATGCATTGCAAAAAGAGGAGCCACCACCGGTTACCACCCAGTGG
GTACATGCAAGATGGGACCCCATACTGATGATCAAGCAGTTGTAGATTCA
AGATTGAAAGTTTATGGTATCAAAGGATTACGTGTTGTCGATGCATCAAT
CATGCCAACCATTGTCAGTGGAAATACTAATGCACCTACAATTATGATCG
CTGAAAAAGCTGCTGATATCATTAAAGAGGACTGGAAAAACTGATAGAAA
TGAACTTTGGAGAAGCTGACATCGATTTATGGAATCATTGACATACATAA
TTGTAGATGAGCGAGAGATCTTTAAATATATTATTCCACTAAATGTCATT
GTATAcccgggggcactcgatttcgaaacgacggtatgtaaatctgcttt
tcaaaatcgtacccttacagtgcagttcaatatggctgaaaaattaccct
ttcagtgcattttctcatgatttacccaacccttatagtgcactatattt
ttGAGCTGTAAATATCTGCGTGAaaaaagaagcttgg
Run BLAST on NCBI

transcript from alignment at sc0000529:208083..211795+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025259 ID=TCONS_00025259|Name=TCONS_00025259|organism=Clytia hemisphaerica|type=transcript|length=3713bp|location=Sequence derived from alignment at sc0000529:208083..211795+ (Clytia hemisphaerica)
TGATATCAACTGAACAGTTTGAAGCATGGGTTGGAAAACGAAAACATTGA
TTTTCCTGCTACCAATAATATCGTATTATGTTTACAAATTTGttaaagaa
aactttttgatcTTTGTTATAATCACGAGTCAGATTTACCCAAGACTTCC
AATCGAGAATTTCGCAAATTTGAATCCTGACATTGCAGATTTTGCGACAG
GAGATGATCAAATAGTTGATGAATATGATTTTGTGGTTATCGGTGCAGGA
TCTGCAGGAGCTGTTGTTGCCAATCGTTTAAGTGAAAACAAATCATGGAA
AATTCTTCTGCTCGAAGCTGGTGGTGGGGAAACAATGTTGACAGAAATGC
CAGGCGGCTTTATACACAATGTCAACTCGCCATTAGATTGGGGTTACAAG
GCAGAGCCTTCCAAGGATAAGTTAGTTTCATCTGCAATGAAAGATGGTCA
GGTTTTGTATCCCAGAGGAAAGTTACTTGGAGGATCCAGTTCTATAAACG
CACTTGTTTATGTGAGGGGTAACAAGAAAGACTACGATGATTGGGCAAAA
CAAGGAAATCCAGGATGGAGTTATGACGAGGTATTACCATATTTCTTAAA
ATCGGAAGATCAAACCGATGAGAGGTTGGCAATATCAAAGTATCATGCCA
CAGGAGGTCCATTGAAGATTGAAACAGCAGAAGCACTCGAATTCTGGCAA
AAGATGATGGAAGGATGCACCAAAATCTTGCCCTTCAACCCTGACCATAA
TGGAGAACGACAGACTGGATGCTCTTATTTTCAGAACACAAAAGGGAATG
GTCTTCGATACAGTACATCAAAAGCTTACCTCAAACCCAAGAGATCAAAT
CTTCACGTCAGTCCATTTTCACATGTTCAGAAGCTTTTGATTGACCCTGA
AACGAAAACAGCCAAAGGTGTTCTTTATAAGAAGAATGGAAAATCCATGA
TAGTCAGAGCCAAAAAGGAAGTTATCTTGTCTGCTGGAGCTGTCGCATCT
CCCCAGGTATGTTTATAACAAACGATGTCAAATATCAGAATTATAATAAC
ATTTAATTCAATTAATAAATCTTGTTCCCAGATCCCACTTTGTTATTACT
AATGGACGTGATTGCTATCAGAATCGTTGATAAGAAAACTAAGGCACTAG
GTGGAGTTTGACAAGAAATTGGATCAGTTTTCTCTCATTCCAGATCTTAA
TGTNTGCTATCAGAATCATTGATAAGAAAACTAAGGCACTAGGTGGAGTT
TGACAAGAAATTAAATTTGCTTTTCTCTCATTCCAGATCTTAATGTTATC
AGGAGTTGGTCCAAAGGAGGAATTGGAAAAACATGGAATTCCGATCATCA
AAGAACTTCAAGTTGGATACAATTTACAAGATCATGTCAGCGTCTTAACG
CACTTGGTCTTCAATGAATCAATATCGTGGCCAGTTGAaaggtaaaattt
tttcaatggcagcatggaggtataaagaaacaggagatcTATGCTTGCta
tttcattgtttctgacatcagtgttagaaaatatttggactaaaaaaggc
ctgtaaacttggcaatctttcatcaaatgacaagatttttcgatcaatgt
tttctttcaggtaaactctattgcttgatactttcctccaaaattctcca
gtgactttatgtctacaaattgagtctgaaattatatgtgcttataaaga
acttttcattttctggtttgagaaaatatcttttcaaaacaaaatttaac
ggataacgaaattgaacataaacttgtttcacggacgaagttttatttca
ttttcttatatactgataattagaatgttcagagcaaactcgAGTTCTAC
TAAatagtcttatttcatcgggcgagcttagaatttcttctaagaaatca
aaagatattaacgaccaattaccgacacattaaactcctgtttttcttta
tatacCTCCATGATGACAGATAACTAGACAGAAAAGAAACAGTACCTGGA
GATCTTGTCTATCTTTGATAAACAAGAAAACTATTTTACTTCTAGAATCA
TTAAATACGACACCTACAAGAAATATCATGATAGCCGTGAAGGTATTCTT
GGTTCTGGAGGTGTCTTCACATCCTTTCTTCCCACAACTGAAGAATCAAA
GCGAACCGATTACCCAGAGATGCAGATCTTTGGATTACCACACCTGGCAT
CAGCAACAGATTATAAGGATGTGTTCAATTTTGATGAGGAGTATTGGACC
AATGTTTACCAGCCTGGGTTGGAAGGACAAGAGGGATATTCTTATTTCAA
TTGTCTCTTAAGACCAAAGAGCAGGTATAACACTAATCCAAGATATTACG
ATTTCATGAGAGGTTGTAATGACGGCATGTCCTCCTCCGTGGTGCTAGAT
GACAGTTTTTGTCAACTCAGGTTCGATGAAAGAAATGACGCATTGTCTAC
TTTTTTGAATCGCTGGTTCTTCACGCCCTTGGGGCTTCTTGTTGTATTCT
TTATATCATTTTACATTTTGCCGAAAGATATTGCGTTATGAGCCTCAGAA
GCATAAAGATAAACTAGGCCTTTAATCATGAAATATGCCAATCATACGTT
TCCtgtgcattatcagctttttgatgcttactgatagcgctctggcgtca
atcagtaacgtaaataaagcctgggatacacggggacaaGGTTGGAAATA
TCCATCCACCTATTGGAGATGTTTGATCTCTTTTATCTCTAGAGGGCACA
TCAAATTAAGAAGCAATGACCCTGAAGACCATCCACTCATCATACCCAAC
TATTTCGACAACGAAGAAGATCTTATACCTTTTGTCGAAGCTTtcaaatt
tggaaagaaatttgCTGCTGCACTTGACAAGTACAATGCCACGGTTCCTG
ATTTGAAAGATCCAGTTTGTGAAAAATTTGCACAAGGTAAgtgcgatgca
ttgtgggattgtttcgggagtattacaatagaattccctcgaggaattcc
ttagagatttttattataatactcccgaaacaatcccacaatgcatcgca
tttttagaaaaatcaagaactccgataagatctataacGCATCACGCTTt
ttgaaatcataaatcacGATATTACGCCAAATTATAAACTCCTCTCTTTT
GTTAATTCAGACTCAGAAGATGATTACATGAAATGCATTGCAAAAAGAGG
AGCCACCACCGGTTACCACCCAGTGGGTACATGCAAGATGGGACCCCATA
CTGATGATCAAGCAGTTGTAGATTCAAGATTGAAAGTTTATGGTATCAAA
GGATTACGTGTTGTCGATGCATCAATCATGCCAACCATTGTCAGTGGAAA
TACTAATGCACCTACAATTATGATCGCTGAAAAAGCTGCTGATATCATTA
AAGAGGACTGGAAAAACTGATAGAAATGAACTTTGGAGAAGCTGACATCG
ATTTATGGAATCATTGACATACATAATTGTAGATGAGCGAGAGATCTTTA
AATATATTATTCCACTAAATGTCATTGTATAcccgggggcactcgatttc
gaaacgacggtatgtaaatctgcttttcaaaatcgtacccttacagtgca
gttcaatatggctgaaaaattaccctttcagtgcattttctcatgattta
cccaacccttatagtgcactatatttttGAGCTGTAAATATCTGCGTGAa
aaaagaagcttgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014187XLOC_014187Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025259-exon-sc0000529-1491911889:208083..209088TCONS_00025259-exon-sc0000529-1491911889:208083..209088Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1510915933:208083..209088TCONS_00025259-exon-sc0000529-1510915933:208083..209088Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1575043694:208083..209088TCONS_00025259-exon-sc0000529-1575043694:208083..209088Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1491911889:209369..209523TCONS_00025259-exon-sc0000529-1491911889:209369..209523Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1510915933:209369..209523TCONS_00025259-exon-sc0000529-1510915933:209369..209523Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1575043694:209369..209523TCONS_00025259-exon-sc0000529-1575043694:209369..209523Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1491911889:210128..210406TCONS_00025259-exon-sc0000529-1491911889:210128..210406Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1510915933:210128..210406TCONS_00025259-exon-sc0000529-1510915933:210128..210406Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1575043694:210128..210406TCONS_00025259-exon-sc0000529-1575043694:210128..210406Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1491911889:210825..211018TCONS_00025259-exon-sc0000529-1491911889:210825..211018Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1510915933:210825..211018TCONS_00025259-exon-sc0000529-1510915933:210825..211018Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1575043694:210825..211018TCONS_00025259-exon-sc0000529-1575043694:210825..211018Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1491911889:211243..211795TCONS_00025259-exon-sc0000529-1491911889:211243..211795Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1510915933:211243..211795TCONS_00025259-exon-sc0000529-1510915933:211243..211795Clytia hemisphaericaexon
TCONS_00025259-exon-sc0000529-1575043694:211243..211795TCONS_00025259-exon-sc0000529-1575043694:211243..211795Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000529supercontigsc0000529:208083..211795 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.906558	0.657205	0.491549	0.522325	0	0.187106	0.249996	0.339781	0.356073	0.575554	0.522765	0.47342	27.5439	33.9699	7.36726	4.94576	1.72138	1.84634	18.9669	18.1173	0.679637	0.944651	1.04201	1.5416	0.340218	0.218607	2.03254	1.16124	1.94051	1.73799
Blast
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BLAST of TCONS_00025259 vs. Swiss-Prot (Human)
Match: CHDH (Choline dehydrogenase, mitochondrial OS=Homo sapiens GN=CHDH PE=1 SV=2)

HSP 1 Score: 288.886 bits (738), Expect = 5.181e-87
Identity = 217/584 (37.16%), Postives = 304/584 (52.05%), Query Frame = 2 
Query:  191 FATGDDQIVDEYDFXXXXXXXXXXXXXNRLSENKSWKILLLEAG-----GGETMLT---EMPGGFIHNV-NSPLDWGYKAEPSKDKLVSSAMKDGQVLY-PRGKLLGGSSSINALVYVRGNKKDYDDWAKQGNPGWSYDEVLPYFLKSEDQTDERLAISKYHATGGPLKIETAEALE-FWQKMMEGCTKI-LPFNPDHNGERQTGCSYFQNTKGNGLRYSTSKAYLKP--KRSNLHVSPFSHVQKLLIDPETKTAKGVLYKKNGKSMIVRAKKEVILSAGAVASPQILMLSGVGPKEELEKHGIPIIKEL-QVGYNLQDHVSV-----LTHLVFNESISWPVERI-IKYDTYKKYH-DSREGILGSGGVFTSFLPTTEESKRTDYPEMQIFGLPHLASATDYKDVFNFDEEYWTNVYQPGLEGQEGYSYFNCLLRPKSRGHIKLRSNDPEDHPLIIPNYFDNEEDLIPFVEXXXXXXXXXXXLDKYNATVPDLKDPVCEKFAQDSEDDYMKCIAKRGATTGYHPVGTCKMGPHTDDQAVVDSRLKVYGIKGLRVVDASIMPTIVSGNTNAPTIMIAEKAADIIK 1876
             A+   +  DEY +VV+GAGSAG V+A RL+E+ + ++LLLEAG      G   L+    MP   + N+ +   +W Y  E  +         DG+VLY PRG++ GGSSS+NA+VYVRG+ +DY+ W +QG  GW Y   LPYF K++      L  S+Y    GPL++   +         +E   +   P   D NG +Q G  +   T   G R+S + AYL P   R+NL     + V ++L   E   A GV Y KNG+S    A KEVILS GA+ SPQ+LMLSG+G  ++L+K GIP++  L  VG NLQDH+ +      T  +   S   P+ ++ I  +   K+  +     L +GG   S            +P++Q   LP  +   D+  V    E Y  +V                 +R  S G +KLRS +P+DHP+I PNY   E D    +E F+   K    +    A  P  +    +  +    D  +    +  A + YHP  TCKMG  +D  AVVD + +V G++ LRVVDASIMP++VSGN NAPTIMIAEKAADIIK
Sbjct:   30 LASAGSESRDEYSYVVVGAGSAGCVLAGRLTEDPAERVLLLEAGPKDVLAGSKRLSWKIHMPAALVANLCDDRYNWCYHTEVQRGL-------DGRVLYWPRGRVWGGSSSLNAMVYVRGHAEDYERWQRQGARGWDYAHCLPYFRKAQGH---ELGASRYRGADGPLRVSRGKTNHPLHCAFLEATQQAGYPLTEDMNGFQQEGFGWMDMTIHEGKRWSAACAYLHPALSRTNLKAEAETLVSRVLF--EGTRAVGVEYVKNGQSHRAYASKEVILSGGAINSPQLLMLSGIGNADDLKKLGIPVVCHLPGVGQNLQDHLEIYIQQACTRPITLHSAQKPLRKVCIGLEWLWKFTGEGATAHLETGGFIRS-------QPGVPHPDIQFHFLP--SQVIDHGRVPTQQEAYQVHVGP---------------MRGTSVGWLKLRSANPQDHPVIQPNYLSTETD----IEDFRLCVKLTREIFAQEALAP-FRGKELQPGSHIQSDKEIDAFVRAKADSAYHPSCTCKMGQPSDPTAVVDPQTRVLGVENLRVVDASIMPSMVSGNLNAPTIMIAEKAADIIK 572
The following BLAST results are available for this feature:
BLAST of TCONS_00025259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CHDH5.181e-8737.16Choline dehydrogenase, mitochondrial OS=Homo sapie... [more]
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