TCONS_00025287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025287
Unique NameTCONS_00025287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length415

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025287 ID=TCONS_00025287|Name=TCONS_00025287|organism=Clytia hemisphaerica|type=transcript|length=415bp
CATTAGGgtaacaatttaaaaaaacaacatgagTGCCGTTATTGGCTACG
TACGTGGAatcatcaatatttttttcatgtttttctctGCTTTCTTTGGC
TTGGTTTTTATCATGTTTCCAAGCTTGATATTGTTGGCTTTTAAGAAGTA
TGACTGGTTTCGAATGTGGAATGATTACTGGGGAGGCTTTTGGCTAACCT
TCCCTGGTGTGagtatattgacttattttttctaTGTACTGAATTGTATG
TCTTTATAAGGGATTTACATAAGACATTGTgacaaaaaaagatttactTC
TCTATATATAATTGACATTACATCATTATGATTACCTGTGGAATTTCTTG
ACCCCTTTAAAATACTCTTTGTGACATGAAGCTTCGTTTGAATATCAATC
TTGCTAGTGTTTTAC
Run BLAST on NCBI

transcript from alignment at sc0000529:221942..222356-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025287 ID=TCONS_00025287|Name=TCONS_00025287|organism=Clytia hemisphaerica|type=transcript|length=415bp|location=Sequence derived from alignment at sc0000529:221942..222356- (Clytia hemisphaerica)
CATTAGGGTAACAATTTAAAAAAACAACATGAGTGCCGTTATTGGCTACG
TACGTGGAATCATCAATATTTTTTTCATGTTTTTCTCTGCTTTCTTTGGC
TTGGTTTTTATCATGTTTCCAAGCTTGATATTGTTGGCTTTTAAGAAGTA
TGACTGGTTTCGAATGTGGAATGATTACTGGGGAGGCTTTTGGCTAACCT
TCCCTGGTGTGAGTATATTGACTTATTTTTTCTATGTACTGAATTGTATG
TCTTTATAAGGGATTTACATAAGACATTGTGACAAAAAAAGATTTACTTC
TCTATATATAATTGACATTACATCATTATGATTACCTGTGGAATTTCTTG
ACCCCTTTAAAATACTCTTTGTGACATGAAGCTTCGTTTGAATATCAATC
TTGCTAGTGTTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014196XLOC_014196Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025287-exon-sc0000529-1575043694:221942..222356TCONS_00025287-exon-sc0000529-1575043694:221942..222356Clytia hemisphaericaexon
TCONS_00025287-exon-sc0000529-1510915933:221942..222356TCONS_00025287-exon-sc0000529-1510915933:221942..222356Clytia hemisphaericaexon
TCONS_00025287-exon-sc0000529-1491911889:221942..222356TCONS_00025287-exon-sc0000529-1491911889:221942..222356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000529supercontigsc0000529:221942..222356 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.552055	0	0	0	0.696753	0.550584	0.910375	0.414579	0.28653	0.370353	0	0	0	0	0.276986	0.526144	0.4718	0.227095	0.291773	0.303202	0.477514	0	0	0.289122	0.184907	0.330051	0.326867	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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