TCONS_00025297 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025297
Unique NameTCONS_00025297
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2813

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025297 ID=TCONS_00025297|Name=TCONS_00025297|organism=Clytia hemisphaerica|type=transcript|length=2813bp
GTTTAGGTaatggaaaattaaaaatggtagctcaaatcaaaactcatcaa
aacaatcaaaaaccaAAACAGGAAcaggaaaaagagaaaaagatcaGGTA
GAAGAGCTTTAAAAGAAAGCAGAAAACAAGAAAGCGAGTAAAGCTCAAAG
GACACACAACCACAAAAATCAATGAAGTGCTAGGATGAGTGATAAAGAAG
AACTTTTGGGAATCGAAGATGTTGATCTAGATGATGATCTTGAAGATGAC
TCTGAAGTGGAATTTGAATTCCCACTCAAAAATGTTGTTGGTGGTGAAAG
CAGAAGTTCTAATCAAGAAGACCAGAACAATGTGACCATTGATGAATACC
TTATCAAGACTGGAGAATGTGGAAAATATCAAATCATTATGGTCTTCCTG
ATGGGATTTGCTATGATCCCAATGTCGTTCCCACCTCTCATATTTTATTA
TATTGGTTATGATCCACCGTGGAGCTGTACTGCTAACGTGTCACATCCAA
ATGGAACTTTCTGCACCACACATAACGCCTCACAATTATTCAAACATACA
GAAAATGATAGATGCTCTTTGAATCAAGGAGAATGGCACTACATGAATCA
TGGAAGATCCAGTGTAGTTACTGAGtttAATCTTGTCTGTAAAGATGCAT
GGTTAGATGCGTTGACAGGATCTATTGTATTCGTCGGTTGGGGAATTGGA
ATATTGACTTTGGGTTATCTCTCTGATCAGTATGGTCGAAAGAAGATTCT
TTACCCTGCTATGTTGTTGACTCTGTTAGCTTTGATGGCTCATGCATTTG
TTACCAGCATATGGCAACTTCTTGTCGTGCGTTTTATCATGGGTTTTGTT
TATTCTGGCCCTGCATTAAATCATTACATTCTATCGACTGAAATAGTTGG
TCCGAATAGAAGAGCATTAGCATCGACACTATCAAGTTGTGCATGGCCCA
TTGGTGCATTTCTAATGACCATAAAAGCATATTATTTAAATAATTGGAGA
CACCTGGCATTGTTCAGTTCAGTTCCATACATGTTTGGACTTATAACGTG
CATAGAAGTATCAAAACTCATCACAGGAAAAAGCGAAGAAGGTTTCGTAT
CTTGTACTCTTCAAAAGTTGTAAATTGTTCGTTATGATGATTTCACAAGC
TTTCATATGGTTTAATAGTGGTATGGTTTATTACGCGTTATCTTGGGCTT
TCTCGGACCTTGGTGGAAATATGTATTTGAATTTCGTTTGGTCGACATTG
ATAGAACTTCCAGGAGCTCTGATCTCTTATTTCTTACTCAATTTCATTGG
GAGGAAGAAAACTTGTATTATCATTTACCTATTGACTGGTTTATTTTGCT
TAGTTGTAACTTGCATTCCTGAATCAGAAAAAGTGGCGAGGCTTGTATTT
GGATTACTTGGCAAACTAATGGCATCAGCGGGTTTCATGTCCATCTATAT
GTGGTCGTCAGAAATATATCCAACCTGTCTCAGAACACAAGGTATGGGTA
TCAACATCGTGACTAGCCGCGCGGGCGCCGCTACTTCACCTTTTATCAAA
CTACTCAACCGCATCCACCCTGCGGCTCCATTCGGCCTGATGACCACCAC
TTGCTTCATTTCAATGCTTCTGGCGTTCGTTTTACCTGAAACCTTCAGAA
AACCAACCAGAGAAACTTTAGATGATATTTACCAAGACAATAAAACGTAC
ACACACAAGATTCACTTTGCATCTTTCACGCAAGAAGACGGCGGAGGAGA
TGAAGGAATGGTCAGAATTGATGGCAATGAAAATGATGAAGACATTGAAG
ATACCGAACATCTTCTGGCATCTCCCGGTGATTATGCTATTGCTTGATAT
ATTGAATGATGAATATTGATGTATTGATGTATTGAAGGGTAAGGATCCGA
CGCTTGGTGGATAAAAGGCGGGGTACGGGGATAAGATCTCTCCAAAGGTT
GGTTTTCGGAAGTTTGGTCTGCACGTATCCGGTATTCTCCAATTCTGCTA
CCCCATGGATGATTATTGATTATTTGAATATTCAATTCTATTCCTGGTGA
AATTTGTAAGTTAAATGAAATCGCCATGTAAGGTTATAAATTATTGGCTA
GATTTAATCAATTCTTAATATTTCCAACTTAGTGAcagcatgaacatata
aacgactggacatccatctcttttgtctttttgaagataacacagctagc
ttcgttgccgcctcgttaaaagtataaaatgaaacaatagattttgatga
tataccacttgcgAATagcttgctaacaacgtcaaaacttcgacaaaagt
ctctgttgttctactcttctcaagtcttttatctatattataacaaagat
aacagaggcaaaatcatcgccagcttgtcaaaactccgactaatatttct
aaattttgacttaaaagtgtctaataattttagagagtgtcacattctaa
tttccatattcttattacacaggctctcaactttggaaagctattttttt
caagtcataaaaaaaattattggagtgacaaaagggattcaaaagtatac
acgcagttgaaattctgcatttcagagttgaaaatgttgataaaatatat
tacaaacttgtaaaaaatttcgaaaataatttttttgtgcattaggagta
atgttcaagctctatcaatctttttaactaaataattcaaagaaataaaa
ttatgacggaatattgtcggatttttcataccaatttcgaaaaacaggcg
gcaacgaagctcgcttcaaagagacaataaaagatagatgtccagtcgtt
tatatgttcatgg
Run BLAST on NCBI

transcript from alignment at sc0000531:21593..32218+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025297 ID=TCONS_00025297|Name=TCONS_00025297|organism=Clytia hemisphaerica|type=transcript|length=10626bp|location=Sequence derived from alignment at sc0000531:21593..32218+ (Clytia hemisphaerica)
GTTTAGGTaatggaaaattaaaaatggtagctcaaatcaaaactcatcaa
aacaatcaaaaaccaAAACAGGAAcaggaaaaagagaaaaagatcaGGTA
GAAGAGCTTTAAAAGAAAGCAGAAAACAAGAAAGCGAGTAAAGCTCAAAG
GACACACAACCACAAAAATCAATGAAGTGCTAGGGTACGTACATTGTTTT
TATTCTACTGTATAAGAGGGATTTTGAGCCTCCAGTTAGAGTCCCCTGAC
CACGCAGTTCATTCACTGCTAGTGGTGTTCATTATACTAGCGAAGCCATA
TTTTATCTAGGCTAcagtgagaggtcctaaatccgacaccactgcctaat
tccgagcccccaaataactgttatgaaaaaaaattatatgtttacaaaca
ttccctctccaagttgaatgataaactattgctagaactctcgaaacaaa
acattatCTAaccatctaacaagatagctgtaatgtcaagatgtcaatta
atgtaattaaaaagtgtgagttgtaaaaataattacctttcagttagtca
cactagcgtcccgccaaaacgcttatcaaagattaatgctgcgaaagcgc
tatatcgtttacttgactctcaagcaaaaaaatgcaccgcaaaacttcta
aagggattcatgaaaaaataacccggcgctttttaatgaaattaacattt
tcaaaaactttgagaaattgcctaaaatttgagccatagaatagatgaaa
agatttaagccaagccaaccttgaaaactaatttgaagatcaacttcgca
agaaaaagatctacgggggaggcggaacccacctagatccgtgcatcgcc
ggataggctatttctcggaaattttgccggacctcaaacaatgaacCATT
TACacgtgcggaattatttttgcattagcgtataaacaaggccttaaaaa
tcaaagtgctgtctcgggaattgaatgacaaaattttgttggttgatatt
tggctgctgcacgttcgcaaacggtcattttgtctcattttaagttttca
agttttattaattgattgtcttgggatcttgaacttgagtcaggtaactc
tcatccttgttgttgaaatacatcctgtagatgactgacgttattttttc
tgaaagctaaatttcctagtgtgactaactgccttttattctggatcagt
tgctcatgtttaaaacgataacagtcagtgtagacctaactaaagctcta
aaacagcatctaatattaaacatgaaaaccagaatatgattcttcaatgg
gaatcaaaactataaagtgcacttacaaacatcaatttgacagatcaaac
aaaattaataaccgcactgtaatcattgacaataaaacaaacgattttct
gtcaagagccttgtaaacattccaacaacttccatcaaaatgatctatca
cagctcagtctaccatttttagcgcggtccgaggattgatctgagaacgc
tccgcgaactcctgcgcgggtgaaaaattCAATCTGCCAATCAacttctc
aagcgaagagtacgcgaagcgattctagctttacgatagtgccgcgggac
atcaatggatagtattcaatcatcattttccctttattttcattcctaga
acttttgcaaaaaaaaggaaaaatagaaaagttgtattttttactgctct
attcacatactgaatttgaaagatcttctatgtggcgtttttttgcaaac
ttcaaaaaactgatttttgtccctcttttgcgggactttggcttaagtgc
ttgtgtgcagcatagggtacaaagtccaaacatgcgtttcccgtaatttt
tgtgtgaagagttaggtctacactgacagttttgtaataaaagtaacttg
tgcgggaaaaatacaaaacaactTGGGCTGgatggtttccatcaagaaac
aaacagacaaaGTATATTAAGAGGTCAAACCTGACTGAAAGGGCATTTTC
CAAGCACATTTTCCTTACCACTGTTTTGGTCTGAAAATGGAGGTTCAATG
CAGTGGCACTGCAGTTAGAGTCTACCGCCCAGTTGGTGACCAATCCTATT
TTGCAACTGAATGTCTTCAAACCCAGAAAAACCATACAAAAATAAACTTC
AGAAGAATTTCTTTTATTCTTCCTTGACCTATCTAccaaatgagaaacaa
acaagTAAAACACATTTAACTTTTTCCGGTAGCACCCAAAACAACCTGTC
ACTTGTGTGGGCGTAAAAGCTTcataagaaaaaaacacttcaaCTGCCAT
TCATAAAAGTACATCATGCCCAAAAGGATGATTACTGTTTTAGAAAGTTG
TGGATTGTTGACTTCTTTCAAGTTTTTGCACCTGTCTCAATCACATTTAA
TTTTAAGCGTATGTGTTTTTAGTAAAGTGAAAGTGGCTTGGGGCAGCGTA
GCTTTTAACTCTTTAACACGAAACACATACTTGAGCTTTGTGCTCAGCCA
ATGCTGCACACCACAAGCACTTACCAGTATATCCATACAAAATTTAGggg
aaacacatatttggacaTGCTGCatgcaagcacttaagctaaagctaagc
tgaagcaggacaaaaatcaaTGGTCACATTGTTCTGGTCTTATTGACTAG
AACTTCTGCTTTCACCAAAGTCATTCAAAGTTTGCAAAagaacgccacat
agaagatctttcaaattcagtatgtgaatagagcagtaaaaaaacaactt
ttcagaatttttctattttttccatttttttgcaaaagttctaggattTA
ATGACAATTGAATACTATTCACGGATAATCTGGGCACTATCTTAAAGCTT
TAATGGGTCGATTCTTACAAAACTCTATCCTTGAACCACAtgtgtttgtt
tttgaaatGGTAGCACAGATGCAGATCATAGACCTTAATTGCTAGACACA
ACATCATATTGCATTGGATAATTTAaccattgttttgatgctggagtttt
tatattTAACATGACATAGTGTCTAGTGAAATTTCTATTCTGATGGAAGT
TATGTAAATGTTTtatcttgacagaaaatcgttcgCTTGATTGTTAAATG
ATGACAGTACTGCTATTAATTTTGTTACATCTGACAAATCGTTAAAACTG
CAACAAGAATCAGTCCGACAACAGAAACTTTGATTGATCTAATTCTCACA
AATAACTCATCAAACATCAAAGACACAATTGTTTGTCCCTTATCGATTGG
AGATCACGACATATAATCGGTTGCAACAGAAAATTGAATTGTGCAAAATA
TGAACCAATCTTTAAATAAACAAGAGATTTTAAAAACTATGACCCTCTGG
CACTCTTAAATGACGTGAAAAAGATGGATTGGAATCCTTTGTACCAAGTT
ATGTAAACTCCTCATACTACTAAAGTAATCAAAGGAAAACCGTCTCCATA
GCTACGAAAAGATCTGATACTGCTCATGAACCAACGCAATCTAGCTTTAC
GAAAGGCACGTTGAACAAAATCCAAAGACGATACAAAGAAATACAAGAAA
CTTAGAAACAAATGCAACGGAAAATTAAAagattcaaaaagaaaacacta
CAAAGAAACTCTAGAAGAAGACAAATCAAACCCGAAGAAATTTTGGGACA
CTGTCAAAAAAATATTCCTGACAAAGTCAAAATCAAGTGTACCCAGAAGA
TCGAAAACGAACGAACAGCAATCATCTTCTCTGATTATTTTAGCGAAGTC
ATCAAAAAGCTAAAATCGACCTTCTCAGTGTTCACCGACCGCGTTTGGAG
ACCACCTAAAATTCGTCCACCAAGAACTCTTCAAGCCTTTAATTTCACCT
ACGTACCGAAAATTTTCGTCGAAAgagaattgaaaaattcaaagcGCAAC
AAACAACAGGTGCAGATGATTTACCTCCTGGAATGTTAAAAGACTGTGCC
ACTGAGATATCCAAACTTCAGGAGAAGTTCCAACACTTTGGAAACAAGCT
ATTGTCTCACCTATCCACAAATCCGGggacaaaaaaacagaaaactttAT
TCTCATATCGATCTTGCCaacgttttcaaaaatattggagaaaGCTGTTA
GAAGCCAACTTTCTGACTTcctcaaaaataaaaacctaCTGACTGATCGT
CAATTTGGAAACCAAAAAACCGATCAACCAAAATTGCTAGTGCTCTACTG
TTTGATGACATTAGATCTTTGATCGACAAAGTAAAACTAGTAGGAGCTGT
CTACATCGATCTGACAAAAGCATTTGACACCGTTAGTCATGCTATTCTAC
TGCAAAAGCGTCAAGAATACGGGATCTCCGCAATAGAACTGAAATGGTTT
AAAGGTTACCTATTTAATAGAAATCAGCAAGTCTGTATCAGTAACTCGTT
ATCAAACAAACAACCGTTGTTCACTGGCGTACCCCAAGGATCTATACTAG
GTCCTCTGCTATTTTTAATCTTATTCAACGATTTCCCAGAATGTTTGGAG
AAATCAAAAGTCATCATGTACGCAGACGACACCGTAATATATTGCAACGG
AAAGTTAAAAACGCAAATCAAAAGTGATCTGAGTCATGACTTCAATAAAG
TTTCTGAATACTTCGACAACAACGAATTGATCGCTAACTTGAAAAAGGGA
AAGACAGAAACTATGCTCTTTGGAACAGCTATACGTCTCTCAATGATCGA
CAAAATCCTTAACGTTTTTTACAGAGGCCAACAAATTAATTACGTACAGG
AATACAAATATCTCGGAAACAAAGTTGATCCAAATCTGAACTTTAACAAA
ACCTTCGATACCTCCTACAAAACAGCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNCGACTGAGACTTCTCCAAAAACTCCGTTCTTACCTCACTA
AAGATGCAGCCTATTCTATTTTCACCATGATGACTGTTCCAATTCTGACG
TACAGAGGCCCGATCATGCTGACATACACCGAAACTCAGAATAAGCAGTT
TAAATCACTTGAATCTAGAGCTCATCGACTGACGGGGAAACGTATTCCAT
CCATACTCAACTTGATCCATGCAGAAGCACTAAACTTGATTAAAAGCTCG
ATTGATAATGAATCTTGTTCAAACCTAAACGGTTATTTTAAGCTGAGAAA
ACANCGATTGATAATGAAACTTGTTCAAACCTAAACGGTTATTTTAAGCT
GAGAAAATATACTAAAACAAGGAACAATGGGTATCTGATGGAGACCTCAA
AAATGAAACTCGAACTTGGAAAACAAAGCTTCAAATATAGTGGAGCTaaa
ctttttaatgatttaccAATTAAAGTTAGGAAACAATTTCTTCTAAGGAT
TTTTCTGACGCCATGAAGGTGCACCTGAAAGTTTAAGCAATAtcttttta
ttgctttttttaaGAGCTCTACAAATTGTCTATCCTACTTTTTAGCTTTT
TAGCTAGTTTTTAGCTTCTCTACTATGCATCTTCTTTACTACACATCTCA
GTCTTAGTCTCACACCACTAGTCTCTCAGCCTTTCTGGCCTCTTTGACCA
CGATACTCATCCTTTGATGCATATTCTTAGACTAAACTCAGTCTTTCGAA
AACATTAattagattttagattttatcaatttataattgtatttattttt
agtaTTTATGTCATTTTATGTAATTTTTATCTTGAGTGTGTGTATTGAGG
TGTGATGTGAAGCGAGTGTACGATTTGGGTGAGAGGAGTGACGTTGATAT
AGcagttgtaaatttttatttatttaactgATGTATGCTCCTCTTTAAAT
ATTAATAAATGAAATGAACTGATTTTTTGAATGCATTTTATGGTTTTGaa
tcccattgaagaatcatataaTAATCATAGGGTAGAAACAATAAATAATG
GGCATTTCCTTTTTTGATAAAACCAACTTTTTTTACAGATGAGTGATAAA
GAAGAACTTTTGGGAATCGAAGATGTTGATCTAGATGATGATCTTGAAGA
TGACTCTGAAGTGGAATTTGAATTCCCACTCAAAAATGTTGTTGGTGGTG
AAAGCAGAAGTTCTAATCAAGAAGACCAGAACAATGTGACCATTGATGAA
TACCTTATCAAGACTGGAGAATGTGGAAAATATCAAATCATTATGGTCTT
CCTGATGGGATTTGCTATGATCCCAATGTCGTTCCCACCTCTCATATTTT
ATTATATTGGTTATGATCCACCGTGGAGCTGTACTGCTAACGTGTCACAT
CCAAATGGAACTTTCTGCACCACACATAACGCCTCACAATTATTCAAACA
TACAGAAAATGATAGATGCTCTTTGAATCAAGGAGAATGGCACTACATGA
ATCATGGAAGATCCAGTGTAGTTACTGAGGTAATGGTTACTTAAATAAAA
CTACTTCAGTAAAATTTTTGTCCATGACGTGTGTAGTCTTTTAAAAGTAA
ATTGACTTTGATATCTTCAAACAAAAGTCAACCTTTTTTATAGTAGAAAT
GCCTCTTTAAAAATAGACAAGTGTAAGGCTTTTGATTTCTACCGTCTGTA
CTCTCTAACGCTATTCTTATTTTGTGCTATATTAGTCTTATATGAATTCA
AGaataattctttttcatttcagtttAATCTTGTCTGTAAAGATGCATGG
TTAGATGCGTTGACAGGATCTATTGTATTCGTCGGTTGGGGAATTGGAAT
ATTGACTTTGGGTTATCTCTCTGATCAGTATGGTCGAAAGAAGATTCTTT
ACCCTGCTATGTTGTTGACTCTGTTAGCTTTGATGGCTCATGCATTTGTT
ACCAGCATATGGCAACTTCTTGTCGTGCGTTTTATCATGGGTTTTGTTTA
TTCTGGCCCTGCATTAAATCATTACATTCTATCGACTGAAATAGTTGGTC
CGAATAGAAGAGCATTAGCATCGACACTATCAAGTTGTGCATGGCCCATT
GGTGCATTTCTAATGACCATAAAAGCATATTATTTAAATAATTGGAGACA
CCTGGCATTGTTCAGTTCAGTTCCATACATGTTTGGACTTATAACGTGCA
TGTAAGTCAGCCCAactatttttatattttcaaaatttgattaaCCCTCT
TGATACCGACAAACAAAACTATtacccaaaaaattatttcgatttttcag
aaaGTGATATTAAATGGTGTTTTAAATtacgaaaaattttaaaaacacta
attttttttgttcgatATTTCATAGTTTTTATTGCAGAATTGAAActgat
tgtttttaaaaatgattgtttttgtAATCTTTTCAGATGTGTTCCAGAAT
CCTTTCGCTGGCTCCATGTGAAAGGCCGCACTGCAGAGGCGGagaaaatc
ttacaaaaagccTCAAATTGTAATAATACCAATTTTATAAATGATTTATC
ATTAGAGAAGTATCAAAACTCATCACAGGAAAAAGCGAAGAAGGTTTCGT
ATCTTGTACTCTTCAAAAGTTGTAAATTGTTCGTTATGATGATTTCACAA
GCTTTCATATGGTAAGAGTTAAAATAAAAGGtctttttggccaatttttt
gccattttagCTTTACTTCATAGATTTTTAGATTATTTGCCTCgataata
tctttccaacggtgagTAAATCACGGTTGCTGAGAATTTGTTAATGATTA
TATACCCTTGTCTCTAGTAGTGAATGGGATTCGATCAACCAAATCCCAAG
TTCTTATTCTTGCTGTCCTCCCTCTAAAGTGTCTAATCATGCCAGTGTAA
CTGAAGTACAGTTGGGTACAGCTCAATCTCTCATCAAActgcaatatttt
tttaaagatgctTCAAGATGCAACCCATGTCTAAAGTACATTTTAGGAAA
TCCTATCCTTTTCACAGCTCTTGCTGTTGGCAAAACTTGAATCAAAATTC
GATACCTTCTTCCTCAGGTTTAATAGTGGTATGGTTTATTACGCGTTATC
TTGGGCTTTCTCGGACCTTGGTGGAAATATGTATTTGAATTTCGTTTGGT
CGACATTGATAGAACTTCCAGGAGCTCTGATCTCTTATTTCTTACTCAAT
TTGTAAGTTCATTCAAATTTGATTATTCAGATTGTTTTATGTACATAAAG
CTGAATACTAAAGGTACATCCGAAATAGAGAATTCGAAGTGTCTGTCCCT
TAAAGAGGGAGGTTAGAACATTCTATATTACGAGAGATAAAGCTATACTT
CAATAACTCTTTGGGCCAGCTCTGTTCCATTCAAGGCTAGCTGTTGCAGG
AATGAGATTCGTAGCAATTTAGTTACACAATCTTAAATGTTTTTCTTACA
CCAATTCTGTTCTTCTTTTAGCATTGGGAGGAAGAAAACTTGTATTATCA
TTTACCTATTGACTGGTTTATTTTGCTTAGTTGTAACTTGCATTCCTGAA
TCAGAAAAAGGTTCGTATATTTTCTtcataattttttcactttagCTTGG
CACAGTCAGCTGACTGAAGGCTAcacaaatttggctaaaacttttgaaat
taaaagGTTTCACTCGGTCAAATCATGTATTTCATTTCAGTGGCGAGGCT
TGTATTTGGATTACTTGGCAAACTAATGGCATCAGCGGGTTTCATGTCCA
TCTATATGTGGTCGTCAGAAATATATCCAACCTGTCTCAGGTACTTCTTc
gctattattattattatcgcTGCGTCATTGCTTCTTTATTAACGTTTGAC
TTTGGCGTTATTGAtaaagtcatttttttattagTCATTATGATACAAAA
AAGTCTCCATTACTAAGTAAAGACCGATGCCAAACATTTATCTTTAAAGT
TATCGAGAGTCAAAGTGATAACAATAATTTAAGATTCTTTCTGAGTGAGT
TTATTGTTTCCCCTTTTTCTCCTCCAGAACACAAGGTATGGGTATCAACA
TCGTGACTAGCCGCGCGGGCGCCGCTACTTCACCTTTTATCAAACTACTC
AACCGCATCCACCCTGCGGCTCCATTCGGCCTGATGACCACCACTTGCTT
CATTTCAATGCTTCTGGCGTTCGTTTTACCTGAAACCTTCAGAAAACCAA
CCAGAGAAACTTTAGATGATATTTACCAAGGTTTGTTTTTGCGagattat
gttttgtttttcaggATCATAGCTTCTTTAAAGTTTTCCTAATTATATTG
GAAATTTCAGGATTTTTTAACTGGGAGACTTCTCAGTTTAATTTCTCAAG
TAGGGAAGACTTCTGGTGGATCTGTGATGCAGTGTTGTCTCGGATCAATG
AAATCGATAATGTCAAAATACATAGTGTATTTGGGCGAAAATCATGATAA
AATTTAattcttgacttttttacaaatgtttaaaaaataatgagaTATTC
CCATCCGATATTCaaaaaattacgtttttctcCATTATTTCCTTTGCAGA
CAATAAAACGTACACACACAAGATTCACTTTGCATCTTTCACGCAAGAAG
ACGGCGGAGGAGATGAAGGAATGGTCAGAATTGATGGCAATGAAAATGAT
GAAGACATTGAAGATACCGAACATCTTCTGGCATCTCCCGGTGATTATGC
TATTGCTTGATATATTGAATGATGAATATTGATGTATTGATGTATTGAAG
GGTAAGGATCCGACGCTTGGTGGATAAAAGGCGGGGTACGGGGATAAGAT
CTCTCCAAAGGTTGGTTTTCGGAAGTTTGGTCTGCACGTATCCGGTATTC
TCCAATTCTGCTACCCCATGGATGATTATTGATTATTTGAATATTCAATT
CTATTCCTGGTGAAATTTGTAAGTTAAATGAAATCGCCATGTAAGGTTAT
AAATTATTGGCTAGATTTAATCAATTCTTAATATTTCCAACTTAGTGAca
gcatgaacatataaacgactggacatccatctcttttgtctttttgaaga
taacacagctagcttcgttgccgcctcgttaaaagtataaaatgaaacaa
tagattttgatgatataccacttgcgAATagcttgctaacaacgtcaaaa
cttcgacaaaagtctctgttgttctactcttctcaagtcttttatctata
ttataacaaagataacagaggcaaaatcatcgccagcttgtcaaaactcc
gactaatatttctaaattttgacttaaaagtgtctaataattttagagag
tgtcacattctaatttccatattcttattacacaggctctcaactttgga
aagctatttttttcaagtcataaaaaaaattattggagtgacaaaaggga
ttcaaaagtatacacgcagttgaaattctgcatttcagagttgaaaatgt
tgataaaatatattacaaacttgtaaaaaatttcgaaaataatttttttg
tgcattaggagtaatgttcaagctctatcaatctttttaactaaataatt
caaagaaataaaattatgacggaatattgtcggatttttcataccaattt
cgaaaaacaggcggcaacgaagctcgcttcaaagagacaataaaagatag
atgtccagtcgtttatatgttcatgg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014206XLOC_014206Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025297-exon-sc0000531-1491911889:21593..21776TCONS_00025297-exon-sc0000531-1491911889:21593..21776Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1510915933:21593..21776TCONS_00025297-exon-sc0000531-1510915933:21593..21776Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1575043694:21593..21776TCONS_00025297-exon-sc0000531-1575043694:21593..21776Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1491911889:27631..28071TCONS_00025297-exon-sc0000531-1491911889:27631..28071Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1510915933:27631..28071TCONS_00025297-exon-sc0000531-1510915933:27631..28071Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1575043694:27631..28071TCONS_00025297-exon-sc0000531-1575043694:27631..28071Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1491911889:28316..28743TCONS_00025297-exon-sc0000531-1491911889:28316..28743Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1510915933:28316..28743TCONS_00025297-exon-sc0000531-1510915933:28316..28743Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1575043694:28316..28743TCONS_00025297-exon-sc0000531-1575043694:28316..28743Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1491911889:29098..29203TCONS_00025297-exon-sc0000531-1491911889:29098..29203Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1510915933:29098..29203TCONS_00025297-exon-sc0000531-1510915933:29098..29203Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1575043694:29098..29203TCONS_00025297-exon-sc0000531-1575043694:29098..29203Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1491911889:29610..29744TCONS_00025297-exon-sc0000531-1491911889:29610..29744Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1510915933:29610..29744TCONS_00025297-exon-sc0000531-1510915933:29610..29744Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1575043694:29610..29744TCONS_00025297-exon-sc0000531-1575043694:29610..29744Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1491911889:30014..30102TCONS_00025297-exon-sc0000531-1491911889:30014..30102Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1510915933:30014..30102TCONS_00025297-exon-sc0000531-1510915933:30014..30102Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1575043694:30014..30102TCONS_00025297-exon-sc0000531-1575043694:30014..30102Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1491911889:30233..30332TCONS_00025297-exon-sc0000531-1491911889:30233..30332Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1510915933:30233..30332TCONS_00025297-exon-sc0000531-1510915933:30233..30332Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1575043694:30233..30332TCONS_00025297-exon-sc0000531-1575043694:30233..30332Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1491911889:30570..30772TCONS_00025297-exon-sc0000531-1491911889:30570..30772Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1510915933:30570..30772TCONS_00025297-exon-sc0000531-1510915933:30570..30772Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1575043694:30570..30772TCONS_00025297-exon-sc0000531-1575043694:30570..30772Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1491911889:31092..32218TCONS_00025297-exon-sc0000531-1491911889:31092..32218Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1510915933:31092..32218TCONS_00025297-exon-sc0000531-1510915933:31092..32218Clytia hemisphaericaexon
TCONS_00025297-exon-sc0000531-1575043694:31092..32218TCONS_00025297-exon-sc0000531-1575043694:31092..32218Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000531supercontigsc0000531:21593..32218 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.87993	1.04517	2.46729e-07	1.1429	2.63686	2.58511	2.83523e-07	2.97971	0.377202	2.14351	0	1.01257	0.359457	0.749942	0.25537	0.612777	0.521703	0.543565	2.4857e-06	0.597253	0	0.0860013	2.55062e-05	1.06005	0.878211	2.69318e-06	0.934172	0	0.045727	0.000291666
Blast
[Close]
BLAST of TCONS_00025297 vs. Swiss-Prot (Human)
Match: S22AF (Solute carrier family 22 member 15 OS=Homo sapiens GN=SLC22A15 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.834e-26
Identity = 78/213 (36.62%), Postives = 114/213 (53.52%), Query Frame = 3 
Query: 1095 SYLVLFKSCKLFVMMISQAFIWFNSGMVYYALSWAFSDLGGNMYLNFVWSTLIELPGALISYFLLN--FIGRKKTCIIIYLLTGLFCLVVTCIPESEK------VARLVFGLLGKLMASAGFMSIYMWSSEIYPTCLRTQGMGINIVTSRAGAATSPFIKLLNRIHPAAPFGLMTTTCFISMLLAFVLPETFRKPTRETLDDIYQDNKTYTHK 1709
            S+L LF+   L    +   FIWF   +VYY L+ +  DLGG++Y N   S LIE+P   +  +L+N  + GRK+T      L GL CL+V  +PE +       V      LLGKL  SA F  +Y+++SE+YPT +R  G+G   + SR G   +PFI  L  +  + PF +   T   S LL+ +LPET   P  ET  D+    + Y+++
Sbjct:  294 SFLDLFRYRVLLGHTLILMFIWFVCSLVYYGLTLSAGDLGGSIYANLALSGLIEIPSYPLCIYLINQKWFGRKRTLSAFLCLGGLACLIVMFLPEKKDTGVFAVVNSHSLSLLGKLTISAAFNIVYIYTSELYPTVIRNVGLGTCSMFSRVGGIIAPFIPSLKYVQWSLPFIVFGATGLTSGLLSLLLPETLNSPLLETFSDL----QVYSYR 502
The following BLAST results are available for this feature:
BLAST of TCONS_00025297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22AF1.834e-2636.62Solute carrier family 22 member 15 OS=Homo sapiens... [more]
back to top