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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025298 ID=TCONS_00025298|Name=TCONS_00025298|organism=Clytia hemisphaerica|type=transcript|length=2932bpRun BLAST on NCBI protein sequence of TCONS_00025298-protein >TCONS_00025298-protein ID=TCONS_00025298-protein|Name=TCONS_00025298-protein|organism=Clytia hemisphaerica|type=polypeptide|length=593bp MSDKEELLGIEDVDLDDDLEDDSEVEFEFPLKNVVGGESRSSNQEDQNNVRun BLAST on NCBI transcript from alignment at sc0000531:21593..32218+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025298 ID=TCONS_00025298|Name=TCONS_00025298|organism=Clytia hemisphaerica|type=transcript|length=10626bp|location=Sequence derived from alignment at sc0000531:21593..32218+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000531:21593..32218+ >TCONS_00025298 ID=TCONS_00025298|Name=TCONS_00025298|organism=Clytia hemisphaerica|type=CDS|length=14256bp|location=Sequence derived from alignment at sc0000531:21593..32218+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025298 vs. Swiss-Prot (Human)
Match: S22A8 (Solute carrier family 22 member 8 OS=Homo sapiens GN=SLC22A8 PE=1 SV=1) HSP 1 Score: 200.675 bits (509), Expect = 1.005e-54 Identity = 156/510 (30.59%), Postives = 248/510 (48.63%), Query Frame = 2
Query: 332 VTIDEYLIKTGECGKYQIIMVFLMGFAMIPMSFPPLIFYYIGYDPPWSCTA--NVSH--------PNGT------FCTTHNASQLFKHTENDRCSLNQGEWHYMNHGRSSVVTEFNLVCKDAWLDALTGSIVFVGWGIGILTLGYLSDQYGRKKILYPXXXXXXXXXXXXXFVTSIWQLLVVRFIMGFVYSGPALNHYILSTEIVGPNRRALASTLSSCAWPIGAFLMTIKAYYLNNWRHLALFSSVPYMFGLITCICVPESFRWLHVKGRTAEAEKILQKASNCNNTNFIND-LSLEKYQNSSQEKAK--KVSYLV--LFKSCKLFVMMISQAFIWFNSGMVYYALSWAFSDLGGNMYLNFVWSTLIELPGALISYFLLNFIGRKKTCIIIYLLTGLFCLVVTCIPESEKVARLVFGLLGKLMASAGFMSIYMWSSEIYPTCLRTQGMGINIVTSRAGAATSPFIKLLNRIHPAAPFGLMTTTCFISMLLAFVLPETFRKPTRETLDDI 1798
+T E L + G G +Q + V ++G ++ M+ L+ + P C N S PNG F NAS L T+ G W Y N + S+VTE++LVC L + SI G IG L LG LSD++GR+ IL + LL + AF + +V RF+ GF SG L+ IL+ E V RA+ ST + G F++ AY + WR L L S+P+ ++ PES RWL + G++++A KIL++ + N + LSLE+ + + Q++ K Y LF+ L M + WF +G YY+L+ + G N+Y+ + +++P I+ L+++GR T LL G L +T +P + R V + GK S+ F +++++SE+YPT +R GMG++ + +R G+ SP +K+ + P P + T + A LPET +P ET++D+
Sbjct: 1 MTFSEILDRVGSMGHFQFLHVAILGLPILNMANHNLLQIFTAATPVHHCRPPHNASTGPWVLPMGPNGKPERCLRFVHPPNAS-LPNDTQRAMEPCLDG-WVY-NSTKDSIVTEWDLVCNSNKLKEMAQSIFMAGILIGGLVLGDLSDRFGRRPILTCSYLLLAASGSGAAFSPTFPIYMVFRFLCGFGISGITLSTVILNVEWVPTRMRAIMSTALGYCYTFGQFILPGLAYAIPQWRWLQLTVSIPFFVFFLSSWWTPESIRWLVLSGKSSKALKILRRVAVFNGKKEEGERLSLEELKLNLQKEISLAKAKYTASDLFRIPMLRRMTFCLSLAWFATGFAYYSLAMGVEEFGVNLYILQIIFGGVDVPAKFITILSLSYLGRHTTQAAALLLAGGAILALTFVPLDLQTVRTVLAVFGKGCLSSSFSCLFLYTSELYPTVIRQTGMGVSNLWTRVGSMVSPLVKITGEVQPFIPNIIYGITALLGGSAALFLPETLNQPLPETIEDL 507 The following BLAST results are available for this feature:
BLAST of TCONS_00025298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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