TCONS_00025361 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025361
Unique NameTCONS_00025361
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length230

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025361 ID=TCONS_00025361|Name=TCONS_00025361|organism=Clytia hemisphaerica|type=transcript|length=230bp
CTTTTGTCGAACCGAACGATATCGTGcttccttttttcctttttgtatcA
GTGAGTGGAATAACCTGGACGAGAACATACGAAATCTTCCTTCAATCTCT
CTTTTCAAAACCGCGATACTCAGATTCTTAAAACCCAATGCCAATTCGGT
TTTCAGACTTGATAACAATAGAGGTGTGGTTTAACTTAACCGTTTAAGGG
TCGACTTCAGTCATCTTCGGGAACATAAAT
Run BLAST on NCBI

transcript from alignment at sc0000532:50972..51201

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025361 ID=TCONS_00025361|Name=TCONS_00025361|organism=Clytia hemisphaerica|type=transcript|length=230bp|location=Sequence derived from alignment at sc0000532:50972..51201 (Clytia hemisphaerica)
ATTTATGTTCCCGAAGATGACTGAAGTCGACCCTTAAACGGTTAAGTTAA
ACCACACCTCTATTGTTATCAAGTCTGAAAACCGAATTGGCATTGGGTTT
TAAGAATCTGAGTATCGCGGTTTTGAAAAGAGAGATTGAAGGAAGATTTC
GTATGTTCTCGTCCAGGTTATTCCACTCACTgatacaaaaaggaaaaaag
gaagCACGATATCGTTCGGTTCGACAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014234XLOC_014234Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025361-exon-sc0000532-1491911889:50972..51201TCONS_00025361-exon-sc0000532-1491911889:50972..51201Clytia hemisphaericaexon
TCONS_00025361-exon-sc0000532-1510915933:50972..51201TCONS_00025361-exon-sc0000532-1510915933:50972..51201Clytia hemisphaericaexon
TCONS_00025361-exon-sc0000532-1575043694:50972..51201TCONS_00025361-exon-sc0000532-1575043694:50972..51201Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000532supercontigsc0000532:50972..51201 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.11252	0	2.3919	3.51015	1.42443	0	5.43195	3.814	0.89009	1.10252	0	1.89537	1.40497	1.45908	3.59867	3.21827	1.58586	1.62546	0	2.34992	1.6266	0	5.9588	1.96905	3.40218	2.02424	2.89668	0	9.37893	2.38891
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025361 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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