TCONS_00025377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025377
Unique NameTCONS_00025377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length520

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025377 ID=TCONS_00025377|Name=TCONS_00025377|organism=Clytia hemisphaerica|type=transcript|length=520bp
tctttttttataaattcataatggtAGATGAAGCTGCAATGAGAAATCGC
ATCCGATAACAAACTCAAATTTGCAGTCACAGAACTGCAAATGATTCAAG
CAAACGGAACCCGCTGAAATGACTCGAATTGCAACtattaaaggcaaaaa
taaatcatGCTACTAATTGTGTTATTTATTTCCTTTCTTACTGAAGAGAC
ACTGGCCCAACAAGGAATACtggATTTTACCATCCAGCCACAGGACAGAA
TCATCATTTTGGGAACAAGAAATGTGTCCATTCCATGCAATGCTACAAGC
AATTCAACAAGTGGAACAATTATTATTCTTTGGAAGCATAACCAAACAAC
GATAACCGATTATACCAATAAACATTTTATGAAAGACCAAAATGGGTCTA
TTGTTTTTGAGCAATTTCTACAAAGAGATGTTGGTACATTTCAATGTGTT
GCTATTCTTTaccatgaaaatattaaacaaaaGCAAATAGAAAGCCGCGT
AGCAAGAATTCAAGCTGCTT
Run BLAST on NCBI

protein sequence of TCONS_00025377-protein

>TCONS_00025377-protein ID=TCONS_00025377-protein|Name=TCONS_00025377-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
MLLIVLFISFLTEETLAQQGILDFTIQPQDRIIILGTRNVSIPCNATSNS
TSGTIIILWKHNQTTITDYTNKHFMKDQNGSIVFEQFLQRDVGTFQCVAI
LYHENIKQKQIESRVARIQAA
Run BLAST on NCBI

transcript from alignment at sc0000533:63241..68282+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025377 ID=TCONS_00025377|Name=TCONS_00025377|organism=Clytia hemisphaerica|type=transcript|length=5042bp|location=Sequence derived from alignment at sc0000533:63241..68282+ (Clytia hemisphaerica)
tctttttttataaattcataatggtAGATGAAGCTGCAATGAGAAATCGC
ATCCGATAACAAACTCAAATTTGCAGTCACAGAACTGCAAATGATTCAAG
CAAACGGAACCCGCTGAAATGACTCGAATTGCAACtattaaaggcaaaaa
taaatcatGCTACTAATTGTGTTATTTATTTCCTTTCTTACTGAAGAGAC
ACTGGCCCAACAAGGAATACtgggtatgactttttttgcatttattttta
TACCAAAAGTATCCCCCCCCCCACCACCAGCACCATCAACAATAAAATTC
TGAACAGCATGCTCCAACTGGAAATAGAAATTAGTTCTAAGGAAATTCGG
TGACCTGGAAAGTGTTGATCTGTTTCTAGTTAGGTGAAAACCTTGTTTTT
TGCACAGGTTGGGTATTAAACGTATATCATTCTTCAGCCAGCACGTCAGC
CAGCCAGAGCCAGGCAGGCAGGATTTGTATATACCAGGatgtaccgtgaa
gtcgggtaacttgcatcagtagagggaaacttgcatagccatcaaatgac
tgaccaatcaaagcagcaaaatttcaaaacaaatgaactacacagCTCTG
CTCGCAGTTTTTGCTCTcttctctaccatttttgttttaatttaatttgt
attttaatgaccagccagatcattcatttgagggctatgcatgtctGCCT
CCACTGATGggagttacctgatctcacggtaaGTCAAATCTTTCAACCTG
CGCTGCGGACTTAGACAAGAGTTTGGTTactatcagttagggttagggtt
gcgTTGGAGGTTTTAAAAGGTCTGTAATCATCAGTTAGTTTTAGTGTCGT
ATCTTATCTTCTTGTTATGACAAACTATTTATGCATGAGTTAGGGTGCTA
GGGTTTGTAGTAAACGAaagttgcttgcatttggtggtatGTAGCCAGTA
AAAGTTTCCTGATTAggaaattatttctttaaaaggaaattctactttaa
ttggattattttttctcgagattaaattttgcaattttaaaatttttgtc
attttcccGAAATTAAAACTCACAAAAATGTGTGAAATTTCCaactcgca
aaattaaattcatcacaaaacttttttaaatcgcATTTTCGGCGGAGAAA
CCAGTCCAAATCACcgatcagttagtcacactagcgtcccgccaaaatgc
atatcaaagattaatgctgcaaaagcgctatatcgtttacttgactcctc
aagcaaaaaaatgtgctgcaaaacttctaaataacccagcgctttttaat
gaaattaacattttcaaaatctttgagaaattgcctaaaatttgagccat
agatgaaaaattttgagccaagccaaccttgaaaactaatttgaagatca
acttcccaagaaaaagatactacgggggaggcggaacccacctagatccg
cgcaccaccaCAATTTTACCGGACCttaaacaatgacccatttacatgtg
caggaatatttttactttagcgtataaacaaggccttaaaaatcgaagcg
ctgtctcgggaattgaatgacaaattttggttggttgattttggctgctg
cNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNcaagttttaattaattgtcttgcgaacttgattcaggtaactct
catccttgttgtgcaaatgcatcctgtagatgactgatgttgttttttct
gaaagttagatttcctagtgtgactaactgccaatTGTGGCAAAAAAGGG
CTTCTTTTCTAGTGTTTTACCAAACTTTCAGTCTCAGGAAGGGCAGTGTT
CGATTGGACGAACTGAATTGATCAAATTGGGCGCTAAAAGGGTATGAAAA
ATTGCCTGTTCAAGCCAGGGTGGAAGACCTATTTTGTGTACCGTAAGTta
gtctaatgttgacatccctcttctaatttccaCATCCTGCTTattaagag
aaagaaaaaatagaaaggtCAGAATGAAcagtttcaaaaattgtgtggCA
TTTTTTAGAAcacaaaaaatggacaaaattcttaaaagttgaataaaatc
tactcaaattaattacaagccttaaaattttgacaggtaataggaaattt
tatcagcttttcaaaaatatatttatgatGTCATTCTTTGTGACAATAAA
TGACTTACTAAATGAATTACCCTATTATGTTCAAAGTATGTCACTCTCTG
TCACAATCAActgttgaaaataatttaaacatAAATCCATGTTTTCATAC
CTCCTATATCATCCAGTAGTTAAATATGAACAACTTTTGGTGTTGATTAT
GTCAAGAAATGACTTACTTTATGGGTAAAAGAACTGAAATATGTCATCCT
TAAAGTAAGTCATTTTTTGTCACACTTTACTTCTGGGTATAACTTGAGAT
ATAGTAAGTCAatttaagtaaaaaataatgCATTATTTAGGGGATATATC
TGGCTTAACCATATCAAAAATATAGACATTATTCACAATGTGCTCTGTTT
CTATGAGAAAGTTTTGTGTGAGCCTTCAAAAATGTCACACACCCAGCACT
GAATTTTTGAAACTGTTTGAATCACTGATGCACTCCTCAACTGAATGTTA
AGCAAAGaaaaccttcctattattcctatctctaaagaagagtgatattg
acattagaccaacctGGACCAACTTATGGTAGTCTATTGGGAGAATGCga
atcttttgaataactaattacgccagcagaatttttttaaataaggcgag
gccaatttaattgtTGTTTTATTTGCCAAACCAACCAAAAAGAGAGTTAG
CATTTCActtataaaatctcctaaaagcCACATTCGTCATAGCAAAAACT
ACTGCATCATGACatgtgaaataaaaaataaaaagacacaaaaagcttgA
ATTCATGGAtacaatgaaaattgaacataaaattctcaaaactttgcaaa
aattaCTTTTCGTTCTCCCAAAAGACTATTTCACAGGTATGAGAAGATTT
TAGAAAACAGCTAGAAACATTCCAGGCAGCCATATAGAAGATTAAATAGA
GACCCATCATGAAGAAGTAGAAAATTTTCTGgccatttataatcaaataa
aatgATCTTATCAAAAAAATCGTTTTAACTCCTATAATGAAGATTTAgat
taaaaagatattttacataCTATATACATCCCCTTAAGAAAGTTCAGTTT
CCCTGCTTTGTTTAACATATAGAATTGAATGATCtgcaatcatggtcaaa
ataatTGAGAATCCTGAtattcaagatttaaagttccggcgagaaagttg
attttgggcttcctttctctttaatttaatcaaagttttcaatttGGGAT
GGGTTGGCAGACTTTAAGGCCATATTATGAGACTTATTGGACTGTTTTTG
AAGGtcctaagtctagcgttaaaacttgATCCTTCAAACCTACtgtagag
cacttacaaatcgaNTGGACTGTTTTTGAAGGtcctaagtctagcgttaa
aactctatccttcaaacctactttagagcacttacaaatcgattgtggtt
tcaaaacttcctggggaatttcccttttttctcaaatattatttttaccT
TGATTGTGCTCTATCAAAAATGTTGCTCAAATCGAATACATCAACATTCT
TTTATGTTGAAATAGTCGGCTAATAGTAATAACAAACAACCTTCCTTTTT
GAAAGCCATTGGATGTTGATATTAAATTAATTGgtgtaccttaagtggat
agaTTTTCGCACGCGTGTACTAATTTTCACGAGATgagaatttaaagatt
tcgcgtggattaaattttgcgaaaaatggccttctttatttaattCCGCG
ACTATACAAATTGTAACTAAAAAAGAGATGTgtgttttttaatcgaacaa
agACAGACactcaaaagctttcaaaaaacttcaaagaaagtACTTTTAGG
AGGTTACTAGAGTTTATAATTGAAATGAAGAGTTGAACTAGTAATATGTT
TTGATTCTAACAtgtttgatttctttctttgattttgcgaactttttttt
tcttcaaaatttttgcatggactaaatttcgtgaaaatggcCATAATttg
cgaaaaccgcgaaaattaatccacgcgaaaatttatccacttaaagCAGT
ATTGAAGCTTTTCAAAGATGATTCCCCttttactttaatcgtagaaattt
tagcgagactaattttagcgtatatttagcgagtcaggaaaatcttgatt
ttttttttatttattttggcgaatcacgatttcaaaaaatttcgcgtgga
taaattttagggaatactcgtattacattattgactgaattcgttttcta
gcatttctttgcactgaaacccttcttattgataaaaatgtatcaaggca
atataaccagaaattttgcgcggataaattttagcgatctgtcgattcgg
cgtgttttagcgagatttattttagcgaaagtAGGGAAAACttgctaaaa
cgctaaaattagtctcgctaaaatttctacgattaaagtatatgATTTAG
CATGGCTTGTTTTGAATAATATTGATATTATATATTTCCAATTAGATTTT
ACCATCCAGCCACAGGACAGAATCATCATTTTGGGAACAAGAAATGTGTC
CATTCCATGCAATGCTACAAGCAATTCAACAAGTGGAACAATTATTATTC
TTTGGAAGCATAACCAAACAACGATAACCGATTATACCAATAAACATTTT
ATGAAAGACCAAAATGGGTCTATTGTTTTTGAGCAATTTCTACAAAGAGA
TGTTGGTACATTTCAATGTGTTGCTATTCTTTaccatgaaaatattaaac
aaaaGCAAATAGAAAGCCGCGTAGCAAGAATTCAAGCTGCTT

Coding sequence (CDS) from alignment at sc0000533:63241..68282+

>TCONS_00025377 ID=TCONS_00025377|Name=TCONS_00025377|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0000533:63241..68282+ (Clytia hemisphaerica)
atGCTACTAATTGTGTTATTTATTTCCTTTCTTACTGAAGAGACACTGGC
CCAACAAGGAATACtggATTTTACCATCCAGCCACAGGACAGAATCATCA
TTTTGGGAACAAGAAATGTGTCCATTCCATGCAATGCTACAAGCAATTCA
ACAAGTGGAACAATTATTATTCTTTGGAAGCATAACCAAACAACGATAAC
CGATTATACCAATAAACATTTTATGAAAGACCAAAATGGGTCTATTGTTT
TTGAGCAATTTCTACAAAGAGATGTTGGTACATTTCAATGTGTTGCTATT
CTTTaccatgaaaatattaaacaaaaGCAAATAGAAAGCCGCGTAGCAAG
AATTCAAGCTGCTatGCTACTAATTGTGTTATTTATTTCCTTTCTTACTG
AAGAGACACTGGCCCAACAAGGAATACtggATTTTACCATCCAGCCACAG
GACAGAATCATCATTTTGGGAACAAGAAATGTGTCCATTCCATGCAATGC
TACAAGCAATTCAACAAGTGGAACAATTATTATTCTTTGGAAGCATAACC
AAACAACGATAACCGATTATACCAATAAACATTTTATGAAAGACCAAAAT
GGGTCTATTGTTTTTGAGCAATTTCTACAAAGAGATGTTGGTACATTTCA
ATGTGTTGCTATTCTTTaccatgaaaatattaaacaaaaGCAAATAGAAA
GCCGCGTAGCAAGAATTCAAGCTGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014250XLOC_014250Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025377-proteinTCONS_00025377-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025377-exon-sc0000533-1491911889:63241..63463TCONS_00025377-exon-sc0000533-1491911889:63241..63463Clytia hemisphaericaexon
TCONS_00025377-exon-sc0000533-1510915933:63241..63463TCONS_00025377-exon-sc0000533-1510915933:63241..63463Clytia hemisphaericaexon
TCONS_00025377-exon-sc0000533-1575043694:63241..63463TCONS_00025377-exon-sc0000533-1575043694:63241..63463Clytia hemisphaericaexon
TCONS_00025377-exon-sc0000533-1491911889:67986..68282TCONS_00025377-exon-sc0000533-1491911889:67986..68282Clytia hemisphaericaexon
TCONS_00025377-exon-sc0000533-1510915933:67986..68282TCONS_00025377-exon-sc0000533-1510915933:67986..68282Clytia hemisphaericaexon
TCONS_00025377-exon-sc0000533-1575043694:67986..68282TCONS_00025377-exon-sc0000533-1575043694:67986..68282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000533supercontigsc0000533:63241..68282 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.71115	2.00236	1.42079	1.64276	85.5341	62.2413	29.186	35.5618	16.9189	21.0758	14.9091	16.3345	2.42779	2.4425	2.00807	4.72701	0.942003	1.7555	1.21266	1.64965	1.32355	2.74371	1.96197	5.23222	7.4712	9.83784	2.81558	2.50406	2.4057	3.09604
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR013151Immunoglobulin
IPR007110Ig-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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