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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025500 ID=TCONS_00025500|Name=TCONS_00025500|organism=Clytia hemisphaerica|type=transcript|length=657bp
ATCAGAAATCGCCGCAGTGCTCCAGAAGACTCCCTACCAGTGGATTTAAA
GTTGGAATTCAACATCAAGAAAGGATTATTCACGGGGTGTTTCATGGGCG
TTTGACAACCATATGGTGTGACGGTACCGCCCAAATGGCGTTGTGTCCAA
GCCTTTATGCTGTTGTCCGTATTAGCCAGTATNCGGTACCGCCCAAATGG
CGTTGTGTCCAAGCCTTTATGCTGTTGTCCGTATTAGCCAGTATTGGAGC
AGTGATATGTGGTATCACTTTTATGACACATGATAAAACACATGGGAATG
CCATTTTTATAGCCCTGCtaattactttttgttttgcagTAATCGCATTG
AGTATCTTCATCAATATCAAAGAGGACATCATTTATAAGCAATATAGCTA
TGGATGGGCGTTTACTTTAGGATGGGTTGGCGCCCTTTCCGCCTTGGGCG
CTGGTATCGCTATCTTTATCATTAATCGATCGTCATAAAACAGTTCCCGA
GTCTAAAATCCATTTTCTTTGAGTATCTTTTTTCCATGTGGAAACCACTG
TTAAGGGAATAACTGATAAAACGCTGTCATGGTTTCTTTAAAGAAGCAGA
ACAGAGTAAACTTAAACGTAAATAGTTTTTACATTTTCgagtttttcaaa
acaatat Run BLAST on NCBI protein sequence of TCONS_00025500-protein >TCONS_00025500-protein ID=TCONS_00025500-protein|Name=TCONS_00025500-protein|organism=Clytia hemisphaerica|type=polypeptide|length=161bp
QKSPQCSRRLPTSGFKVGIQHQERIIHGVFHGRLTTIWCDGTAQMALCPS
LYAVVRISQYXVPPKWRCVQAFMLLSVLASIGAVICGITFMTHDKTHGNA
IFIALLITFCFAVIALSIFINIKEDIIYKQYSYGWAFTLGWVGALSALGA
GIAIFIINRSS Run BLAST on NCBI transcript from alignment at sc0000538:4483..5546+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025500 ID=TCONS_00025500|Name=TCONS_00025500|organism=Clytia hemisphaerica|type=transcript|length=1064bp|location=Sequence derived from alignment at sc0000538:4483..5546+ (Clytia hemisphaerica)
ATCAGAAATCGCCGCAGTGCTCCAGAAGACTCCCTACCAGGTACCTAATT
ATTTTGAGGCTTTattctattttctatttcagTTACTTTTCAATCCCACt
gttaattttaaatttccaaataaataCACAAACGCCCACAAACGGttaga
ttttattaaaaaaaacagtagTGTCGTGATCGCATGCAGAGGATGCAGCC
GTCGATTTTTGGTTGGTGGGAGCGAGGGTCCCTTATATACAAGGGAAACA
ATTATTATCGTCAATATAGCACTTTTCTTTTCTCCCCGCAAACTGAGTgg
tttttcagctaaaaaaggtaaaattatCCCGAAAAAAGCTCTAAAATCct
aatttctttccttttcctCCCCGTAGTCTTAGTTTAGCCACGTTAATTGC
AATACAGCAACCTACATACagctttatttcattttttactttCATAGTGG
ATTTAAAGTTGGAATTCAACATCAAGAAAGGATTATTCACGGGGTGTTTC
ATGGGCGTTTGACAACCATATGGTGTGACGGTACCGCCCAAATGGCGTTG
TGTCCAAGCCTTTATGCTGTTGTCCGTATTAGCCAGTATNCGGTACCGCC
CAAATGGCGTTGTGTCCAAGCCTTTATGCTGTTGTCCGTATTAGCCAGTA
TTGGAGCAGTGATATGTGGTATCACTTTTATGACACATGATAAAACACAT
GGGAATGCCATTTTTATAGCCCTGCtaattactttttgttttgcagTAAT
CGCATTGAGTATCTTCATCAATATCAAAGAGGACATCATTTATAAGCAAT
ATAGCTATGGATGGGCGTTTACTTTAGGATGGGTTGGCGCCCTTTCCGCC
TTGGGCGCTGGTATCGCTATCTTTATCATTAATCGATCGTCATAAAACAG
TTCCCGAGTCTAAAATCCATTTTCTTTGAGTATCTTTTTTCCATGTGGAA
ACCACTGTTAAGGGAATAACTGATAAAACGCTGTCATGGTTTCTTTAAAG
AAGCAGAACAGAGTAAACTTAAACGTAAATAGTTTTTACATTTTCgagtt
tttcaaaacaatat Coding sequence (CDS) from alignment at sc0000538:4483..5546+ >TCONS_00025500 ID=TCONS_00025500|Name=TCONS_00025500|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at sc0000538:4483..5546+ (Clytia hemisphaerica)
CAGAAATCGCCGCAGTGCTCCAGAAGACTCCCTACCAGTGGATTTAAAGT
TGGAATTCAACATCAAGAAAGGATTATTCACGGGGTGTTTCATGGGCGTT
TGACAACCATATGGTGTGACGGTACCGCCCAAATGGCGTTGTGTCCAAGC
CTTTATGCTGTTGTCCGTATTAGCCAGTATNCGGTACCGCCCAAATGGCG
TTGTGTCCAAGCCTTTATGCTGTTGTCCGTATTAGCCAGTATTGGAGCAG
TGATATGTGGTATCACTTTTATGACACATGATAAAACACATGGGAATGCC
ATTTTTATAGCCCTGCtaattactttttgttttgcagTAATCGCATTGAG
TATCTTCATCAATATCAAAGAGGACATCATTTATAAGCAATATAGCTATG
GATGGGCGTTTACTTTAGGATGGGTTGGCGCCCTTTCCGCCTTGGGCGCT
GGTATCGCTATCTTTATCATTAATCGATCGTCATAACAGAAATCGCCGCA
GTGCTCCAGAAGACTCCCTACCAGTGGATTTAAAGTTGGAATTCAACATC
AAGAAAGGATTATTCACGGGGTGTTTCATGGGCGTTTGACAACCATATGG
TGTGACGGTACCGCCCAAATGGCGTTGTGTCCAAGCCTTTATGCTGTTGT
CCGTATTAGCCAGTATNCGGTACCGCCCAAATGGCGTTGTGTCCAAGCCT
TTATGCTGTTGTCCGTATTAGCCAGTATTGGAGCAGTGATATGTGGTATC
ACTTTTATGACACATGATAAAACACATGGGAATGCCATTTTTATAGCCCT
GCtaattactttttgttttgcagTAATCGCATTGAGTATCTTCATCAATA
TCAAAGAGGACATCATTTATAAGCAATATAGCTATGGATGGGCGTTTACT
TTAGGATGGGTTGGCGCCCTTTCCGCCTTGGGCGCTGGTATCGCTATCTT
TATCATTAATCGATCGTCATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025500-exon-sc0000538-1491911889:4483..4522 | TCONS_00025500-exon-sc0000538-1491911889:4483..4522 | Clytia hemisphaerica | exon |
| TCONS_00025500-exon-sc0000538-1510915933:4483..4522 | TCONS_00025500-exon-sc0000538-1510915933:4483..4522 | Clytia hemisphaerica | exon |
| TCONS_00025500-exon-sc0000538-1575043694:4483..4522 | TCONS_00025500-exon-sc0000538-1575043694:4483..4522 | Clytia hemisphaerica | exon |
| TCONS_00025500-exon-sc0000538-1491911889:4930..5546 | TCONS_00025500-exon-sc0000538-1491911889:4930..5546 | Clytia hemisphaerica | exon |
| TCONS_00025500-exon-sc0000538-1510915933:4930..5546 | TCONS_00025500-exon-sc0000538-1510915933:4930..5546 | Clytia hemisphaerica | exon |
| TCONS_00025500-exon-sc0000538-1575043694:4930..5546 | TCONS_00025500-exon-sc0000538-1575043694:4930..5546 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000538 | supercontig | sc0000538:4483..5546 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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