TCONS_00025525 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025525
Unique NameTCONS_00025525
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025525 ID=TCONS_00025525|Name=TCONS_00025525|organism=Clytia hemisphaerica|type=transcript|length=844bp
CTTAGTGCTCTGTTTACATTGAGTGATCAACCTTGTTCTCAAGTGATaca
ttgtttcttttttcttaactAGCTACTCGGCAATCATAATGAATGAGGAC
TTAGGTATTCATCAAAATGTTGTACAGCTTTACAGTATACAAAAGGCAAA
ATATTATTTCCCAAGTAAAACGCAGGAAAAGCCTCTTCAGGAGCTTTGCT
TTCTTATGGGCTTCTGattcacaagcttctgataaaAGATTCGAACGTCT
AGGaaacttttcgaatgtttttgtagtagaaaagaaaaatgtaaGAGAGA
GAGAAAATATATCAGTGAAAATAAACACTCAGAAGGAGTTCATTACATCA
CTATTTCACATGAAAACATAATAGAATAGAAGGAAAGGGAAACACTCAGA
TGGAGctcgatcaaaacaaacaaaacaggaccttggctttcactttcact
tcaaaacttttccctaaatttctttttcttggcaGGTCTTTTTATATTTT
GATATTACATCAACAATATAAAACAATTTAAAACTTTCTTTTCATCGATA
ATATTTTTATATGGCAGAATCATGTTTTTATCTGTTCTTCGTGTCAAATT
TTATGCTAGAAGTAACTTATTTTTAACCATCCAAtgatggaataaaaatg
tcacaGGTTTTTAACAATAATTAAGTCTCAAAGCCCTTAAACtatcttga
aaacaaaataaaactactCACCAGTACTCACCAAAATTGATTCAAGGTAC
ttattttacaaagaaaattcaCATAAGACCCACCCAATTAGTACCCGGGT
ACTTGTTTGATTAAACAAACTTGGCTCCCCACCCACCCAAAAAG
Run BLAST on NCBI

transcript from alignment at sc0000538:131476..132319

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025525 ID=TCONS_00025525|Name=TCONS_00025525|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at sc0000538:131476..132319 (Clytia hemisphaerica)
CTTTTTGGGTGGGTGGGGAGCCAAGTTTGTTTAATCAAACAAGTACCCGG
GTACTAATTGGGTGGGTCTTATGtgaattttctttgtaaaataaGTACCT
TGAATCAATTTTGGTGAGTACTGGTGagtagttttattttgttttcaaga
taGTTTAAGGGCTTTGAGACTTAATTATTGTTAAAAACCtgtgacatttt
tattccatcaTTGGATGGTTAAAAATAAGTTACTTCTAGCATAAAATTTG
ACACGAAGAACAGATAAAAACATGATTCTGCCATATAAAAATATTATCGA
TGAAAAGAAAGTTTTAAATTGTTTTATATTGTTGATGTAATATCAAAATA
TAAAAAGACCtgccaagaaaaagaaatttagggaaaagttttgaagtgaa
agtgaaagccaaggtcctgttttgtttgttttgatcgagCTCCATCTGAG
TGTTTCCCTTTCCTTCTATTCTATTATGTTTTCATGTGAAATAGTGATGT
AATGAACTCCTTCTGAGTGTTTATTTTCACTGATATATTTTCTCTCTCTC
ttacatttttcttttctactacaaaaacattcgaaaagtttCCTAGACGT
TCGAATCTtttatcagaagcttgtgaatCAGAAGCCCATAAGAAAGCAAA
GCTCCTGAAGAGGCTTTTCCTGCGTTTTACTTGGGAAATAATATTTTGCC
TTTTGTATACTGTAAAGCTGTACAACATTTTGATGAATACCTAAGTCCTC
ATTCATTATGATTGCCGAGTAGCTagttaagaaaaaagaaacaatgtATC
ACTTGAGAACAAGGTTGATCACTCAATGTAAACAGAGCACTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014333XLOC_014333Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025525-exon-sc0000538-1491911889:131476..132319TCONS_00025525-exon-sc0000538-1491911889:131476..132319Clytia hemisphaericaexon
TCONS_00025525-exon-sc0000538-1510915933:131476..132319TCONS_00025525-exon-sc0000538-1510915933:131476..132319Clytia hemisphaericaexon
TCONS_00025525-exon-sc0000538-1575043694:131476..132319TCONS_00025525-exon-sc0000538-1575043694:131476..132319Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000538supercontigsc0000538:131476..132319 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.00025	1.99639	4.02918	2.96614	4.24062	2.95359	2.87716	3.025	1.78908	1.61348	1.09207	2.45718	2.11534	2.60286	1.92543	2.54881	1.57584	1.60813	0.757473	0.870086	2.90014	4.18285	1.13508	1.68248	2.42543	3.8611	2.69414	3.75866	1.91221	1.85424
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025525 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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