TCONS_00025539 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025539
Unique NameTCONS_00025539
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length455

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025539 ID=TCONS_00025539|Name=TCONS_00025539|organism=Clytia hemisphaerica|type=transcript|length=455bp
AAGTTTGTATGTTTGACGTTCGAAAGCTCAACATCTAAGTCTGGCCCTCC
TGCTCCACCAAACAAGTTGACATTGTGTATTTGACGGCCTGGTGTGTTTG
GGATAGAAGATATCTCAACTCCGTTAACAATAAAAGTGTAACGGTATTCC
CCGTTTGCTACATAGCGGTGATTGATTTCAAATGAGTAGATTTGATTTAG
GTTAACATCATACTTTATGATACCGTAATTTGTTGACGAACCAAGATGGC
TAAAAatccagatttttttcaaatgaagatATATTCTTGGCACACGACCT
CCAAAACGGTGATGAGTTGCTCCAGTGGTTGCCACTAAAAGCGAATACCA
GTTATCTGGGTATTCTCTACAGATgaaatcaaaagataatgacCATTCTG
TGGACAACCGACCAATGTTTCCAATCAATCCAACGTCACTTGGCTTGAAA
GCTTA
Run BLAST on NCBI

transcript from alignment at sc0000539:51637..59458+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025539 ID=TCONS_00025539|Name=TCONS_00025539|organism=Clytia hemisphaerica|type=transcript|length=7822bp|location=Sequence derived from alignment at sc0000539:51637..59458+ (Clytia hemisphaerica)
AAGTTTGTATGTTTGACGTTCGAAAGCTCAACATCGACGTCTTCTCCTCC
TGCTCCACCAAACAAGTTGACATTGTGTATTTGACGGCCTTGTGGGTTTG
GGATAGAAGATATCTCAACTCCGTTAACAATAAAAGTGTAACGGTATNGG
TTTGGGATGGAAGATATCTCAACTCCGTTAACAATAAAAGTGTAACGGTA
TTCTCCGTTTGCTACATAGCGGTGATCGATTTCAAAAGAGTAGGTTTGAT
TCAAATTAACAGTAAAAATTACGATTTTTTCACTTGGTCCCGAATTATAA
CTATAAATCGAGATTTCTTTATCCGTATGGAGATATATTGTTGGCACACG
ACTTCCAAAAAAGCGATAAGCTGCTCCAGTTGTTGCCACTAAAAGTGCTA
ACCGACTATTTGGGTATTCTCTACAGATGAAATCGAAAGATAATGACCAT
TCTGTGGACAACCGACCAATGTTCCCTATTAATCCAACCTCACTTGGCTT
GAACGCTTAAAtggaaattgaaatattcgtgTCAAATAAAGAAGAATGCA
AAGCTTCTAGACTGCAATTCAAGGAAATAAATGTTGTTTCAGAAATGCAT
TTTCATGGTAATTTTGCTCGCAAAGTGATAAAAAGTCGCAtgttgggata
gagataggctaCAACGCAAACcagatttttttagaaaatcgggaaacttt
ttgggaaaaatcgggaaaatttgTTCATAATCGGTGGAAAATTTCACGTA
TTTATACTAAAAACAGtacagattcacgcattcacacaattaaaaaagtg
gattttcacgttcatttaattaagttttttttttcaattcacgcatgcGT
GCAACCAAAAAAGCTCATTCAGCCAACCACTGGGAGGAACCCATTCAAAA
CTGCTGCAGGTAATAAAGTGAACAAAAAGTCTTTTAAAGGTTGCGCATGT
AAGGACATAGAAGATGCTAGCGTTCGTTACAGTCATAGTTAAGGTGGGAA
AATATTGCAGTCTGACGTTATGGTGGTATACAGAGAAAGAATCGGCGGGA
GGGTTTCAAAGAAACAGACTGGCAAACtggactggcaaactctaccgact
gtaaactctttttggcaaaaaaaaccgtttgcaagttttcttcggctttg
ggttTATTCCTTAggtagtgatttgtcttagcaTTTTCCAGTAAGAGCAC
CTCTCTCTTATAGATATTTTCATAGATTACGTCAAGAGCAACGGTTATCT
tgatttcgaaatatttcatACTGTAGGAAACGATTCTGAGTGGAGTTCAT
GAATGAAGTAACATTTAAAGACTTGAGGCATTTGATCACCTTGGTAACGG
TTTCAAAAAgaggcagtcgttgcactcaaaattATATATGAAGGTTCCAA
TTTGAAGCATATTTCAAGCCAACCATAATCAATCAATTGTGGTACAAAGT
TTGAATATAATTTTGTTCTTACTACTTTTTGGCAGTAGTTCTTTGTTCTT
ACCTTCAAGTCTGGTGATTTGAGGCTCAATGCCATGGTTATTTGGAGGAA
TGCCCAAAATCTAAGAAAAAGCATATCAAAAGTGCATGAAATTGcacgac
taaaatttgggcagACTGGGGAGACATATAttataacgtttttattttgg
aggtcctataaaaaataaatatctttattaaAAATTAGGCAAGAGAAACG
AGTacgaaaattttggggtattttctcTCTATTTACCCGAAAATTGCGAC
ATATAAAATGGAAAAGATTTAACGGCTTTTCCTCTGTGTTGTTTTGGGAA
TagaatatttttctgaaaagaaaataataatgtGCAACCATCTCTTTTTA
tccaaaaattatataaatagTTTTATGGCTATTCATCGTTTTATCAAAAG
TTTACATTAATCCTGTTAGCTTAAGCAGTCAGTGGAAAACACTCCCATTG
TCTGGAGTGGGTGAGTGAGTGTGCTGGTTAATGTATTTGGCTTTCTCAAA
ATGGGAAAAAGGCTACTGAAGCGGCggctagaaataatgatgttTTTTAT
TGGATAGTTTCTCATAAAAAGAATTGGTAGGGCCTGGAAACGAGGTTGAC
TATACAGGGTGTCCAGAAAAAAAGTACGGTGTTGAAaaatgattctgagt
agaaggttgttgcgtttgtttaacaaaatgtaagaaaatatataacaata
caaaaattgtttttacaacagtcatgattaaaaatatttaactttctttc
gattttcatgacgttaaagttaaATAATATATTTCCTTGACAAGTTAAAA
ATTGTACATAACTCCGAGTTTCATGCTCTCCTAgcaacccgggggggggg
gggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccccccgggcctagCAA
TCGTCAGATgtgaataaaatcaaaacattaaagatattgagaattttttt
tgtaaaagttattcataaaagatgacAATAAATCATGACAATAAATATGA
CACAgagataaacattgcaaatttagtgaaacacacacaagaactttatt
tctatagaagtggtattATTTTTCCGGACGACCCTGTACTAATCATGGAC
AACGTTTGTtcatgttcacaacgtccaagtagcgttagatgaacgtcgat
ACAACGTTGTGTACAAGTTTGGATTATCCTTCCTCACCTTACATTCAGCA
TTTGCTTGACAGGAAAAAACTACAATAATTGCAAGTGTACAAATTTTGAT
CATGATGAAAATTAGATCAAGAAAgaagttttcaaaatcaaaataacaat
tttcCGTTTTTACTATaaattggaattttttaacgattattcattttaaa
atttttcaattttttgatgacaatGTCATGATAACTTTAATATATTATTA
CATACTTTTAGTCATCACCAAAAGACAATTTTTGCTCAGTCGTGCCGAGT
TTTAAAATAAGCTCCTTCAGGGAACGGAGCGTCAGTTTGATTCACAAGTT
CCTtcccattgacttccaagcccgaagggctagactcaaGACTCCAGGAT
GGGAAATGACCCTACTTTATTCCCATCCTGAGCGCTCGTGCGTGGctttt
acacaaacgctggattgcgaaactaaaatctatcgccagatttaaaaaat
gtacaATCAcagtcgtaatatttgagaaaaaagggaaatccctACGAAAT
CTTTTAACCACAAACagtttggaagcgctctaaattaggttggaagagTA
GAGTTTTCACTCTGAGTTTTAGCGCTTAGGAGCTTACGATCTACGGATCC
AAAAGTTCGAGAATGATCCAATAGGGTTCAAAATATAGCCTAGTAGTCTA
AAAACCCCTCTCGGATTTAAATACTCGagtaaatttatcaattaatcAAA
AAGCGAACTCTTGCCGCgaacttcaaatttcgaaaaacgagcaagtaagc
taaattctcaatggATTTTGAACATCATGATTGTAGtcctcgaaaacaaa
ggaaaggaATCTGTCGTCATGACTACGGCGCGTTTTAGGTTCGTTCTgga
taggaaataagtggcgtcactttttcttgcctgggaaaggttagagattc
tactctagccctttgggaTTTAAACTCAATGCTTTCTCCGAGTGAAAGCC
TGCTGACGAGGAAAAAATACCAATAAATTATTCAACTGGAAATTCAGCTA
CATTGAAACTTATGGCGATTATTCAATCCGGTTTATTGATttgatacacc
tttttttataaggatatccaaaacttttgaagccttcggatgttcttaac
ttttttagttttaagacTAAAAATGCTCTCAACATGTTATTATCTTCACT
TTTTCgttagtttttttctttattttcctacgaaattggctgttttaggG
TCTGGAaagacttaaaatgttcttgataatttgttcttaatatatTTGTC
ATCGAAGcattatattcttatatagttcttgtttttatggaaaaaacTGT
GTAGCAGATTTAGTCTTATGGAGTGATATTTCTTTTATGCTTTGCAAAAG
CTATAATCATTTtcgaatagacgatatcggctttaccgaattctccccga
atgactacccatgatgcattgcgcaaaaaaattcacggacgataacccaa
accctaacaatgcatcatgggtaatcattcggggagaattcagaaagccg
atatcgtctattgagatttttttcaacTAAATAACAACAACATCAGCATG
ACACCAGAACTTAAAGGGACAtcaaagtactgacgaaatttgtaaacaaa
tcgTATACAGCGGAATACAATATCAAtacaaaaaatgtcacatgtcaaaa
taaaaaataaaaacagttatGGCTGATTtagattgtttcaattgttttac
aagtttgttttggacacgtgattttaattgttctcacCCTGATGGACGAT
GGGCGCTTAGAAGGAGTAGCAAGTTTTGTTCACACCTTATGTAAATATTA
TGCTAGTTATATACTAGTCAATTTTTATTTAGACTGGATTAAAATTCATA
TTCCAAATTTGTAAGAAACAAATCAATATTTACAAGATATGTAAAACAGA
ATATTATGAATGCTAGATTAAacctagacgatcctatcgtctacacaaga
tcactaaaaaagggaatagtttaggagaggcgtgataaattcgggtggag
taagcagtggcggaggtgtttacagtgcgtttgttccaaactctctgccg
tcaattttttcccttaaaccgccctgacgccctaactctttctcgcattt
actttaaacagacgatagcatcgtctagatTAAACCTAGcgctttttttg
ttttcttgcaGTTTTTCGGAAACCCAACGCTAGagacacttcaaaaaagt
catttatcttaaaaagataattagttcaagataccttatcggcccttttc
acgccggccctaatttaacgccagTCTTTAttccgccacagcctaattct
gggcttacgccaattagggccgtaaataacgccaaaacttataaaaatgg
ctacttatgcttcaaattagtaaataatgactaaaatttacgttaaaatg
tcatttttcagtagtaaactgttgaaaatcccatcgaaaatcactgattt
ttaaatatatattaaatatttcactgaagttttaaatatggagtaaaaac
aatggataattttcgtcttcgaatcatacctaaaatcctttaaattgaga
aataatgataaagaattaacgccgcttttaggttaaaattgctAAATCTT
GGTGTGAGTGGAGAGAACGAagatgttttgaataatttgactgGTCGAAA
TATCTCAGCCTTAATGGACAAAAATGAACCTAACCTAAGGAAACCAAACA
GAAAATGGAGAAcagaaaatgtaaaatgcaAACACCAATTCTTGAACTTA
AACCAACTTAAAATGtaacaaaaccaaaaagaacCGAAATAAAACGACAG
TAAATTAAACTTCAGTAAAACGCACCTCTCACACACAAGACACTCACTCA
GGTCTCtcaggtcgtgttcagacctgaaagtttaagtttaaggtttaagt
agtattttgttgatatgggaattcaattataatcacttttcttttgtcat
catcgatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttggttt
aactaatgaggagcgtgccgttgaatacaaaaggaatataaaagaaacat
gtagacctaattgctttaaaccttggtctgaacacgacctcaGTGTTGAA
CTAATTGCTATCTACAAAATTTACAGTTAATAAACATATCCTAATTTCCC
TAGAGGAATTACAAATGAATACAAAAGACACTTAAAACAAAAGGGACACT
AAACAAAAGAGGACTCAAGAGACACATGAAGACTAAAAGACTCCACAGGG
AATACCAATTAAAACATAGAAACATAAACAGCACGGGCAATTAAATGTTC
ATTACGATGGAGCAGTTTTCTCCATCAACACttggcccttttaacgccgg
cccaTATTACGCCACGAgtccaaaaataacgccaataagggcccgtgtaa
aaagggccgataaggtagatcAAACCTTTTCACTCTTTTGATATGGTTCC
TGAAAGGACCTCTAAACCCCTATCCCCTTGAGCTGAAGCTACGTAAGTTT
ATTGGCTGCAATGACTGGAAAAAATTTAAGCACCATGTTAGAATATTTTG
AATACAGTAGAGTTTCCACAACACACAAGAAACATAGCAATTAAGTCTAG
AACAATTAAAGTTTAGAGCCTAAATAGTGTGCTCAAGCTTGTTGTTCAAA
GGCTTGAAATTCAAAGAAAGTTTGTATGTTTGACGTTCGAAAGCTCGACA
TCTAAGTCTGGCCCTCCTGCTCCACCAAACAAGTTGACATTGTGTATTTG
ACGGCCTGGTGTGTTTGGGATAGAAGATATCTCAACTCCGTTAACAATAA
AAGTGTAACGGTATTCCCCGTTTGCTACATAGCGGTGATTGATTTCAAAT
GAGTAGATTTGATTTAGGTTAACATCATACTTTATGATACCGTAATTTGT
TGACGAACCAAGATGGCTAAAAatccagatttttttcaaatgaagatATA
TTCTTGGCACACGACCTCCAAAACGGTGATGAGTTGCTCCAGTGGTTGCC
ACTAAAAGCGAATACCAGTTATCTGGGTATTCTCTACAGATgaaatcaaa
agataatgacCATTCTGTGGACAACCGACCAATGTTTCCAATCAATCCAA
CGTCACTTGGCTTGAAAGCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014341XLOC_014341Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025539-exon-sc0000539-1491911889:51637..51668TCONS_00025539-exon-sc0000539-1491911889:51637..51668Clytia hemisphaericaexon
TCONS_00025539-exon-sc0000539-1510915933:51637..51668TCONS_00025539-exon-sc0000539-1510915933:51637..51668Clytia hemisphaericaexon
TCONS_00025539-exon-sc0000539-1575043694:51637..51668TCONS_00025539-exon-sc0000539-1575043694:51637..51668Clytia hemisphaericaexon
TCONS_00025539-exon-sc0000539-1491911889:59036..59458TCONS_00025539-exon-sc0000539-1491911889:59036..59458Clytia hemisphaericaexon
TCONS_00025539-exon-sc0000539-1510915933:59036..59458TCONS_00025539-exon-sc0000539-1510915933:59036..59458Clytia hemisphaericaexon
TCONS_00025539-exon-sc0000539-1575043694:59036..59458TCONS_00025539-exon-sc0000539-1575043694:59036..59458Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000539supercontigsc0000539:51637..59458 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.04833	0.985176	3.29511	4.80071	0.737721	0.862776	0.279367	0.0325708	0.00972662	0.556973	0	0.223325	3.29516	2.77721	0.465163	0.163889	0.129131	0	1.00435	3.758	0.490599	0.468328	1.22765	0	2.98804	4.41604	0.160566	0	0.878919	0.31085
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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