TCONS_00025559 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025559
Unique NameTCONS_00025559
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2213

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025559 ID=TCONS_00025559|Name=TCONS_00025559|organism=Clytia hemisphaerica|type=transcript|length=2213bp
tCAGTTATCACAATCGAAATCAAAAGTATAATACAAGGAATTGATGTTTT
TAACTCTATGACGCAATGAAAACCAATCTAACCTCTTCCAGAAAGTTTCT
CATCGCAGACACTCCTCATAGATTTATTTCAACCAAACAAACGCCCTTTC
AACGTATTGAAAATGGAATCCTACCCAATAAAACAGGGCGGAGGGTGGAT
TTATCGAGCCAAAACATTACTCAAATAGTTCTTCCTTGCATTTTAATAAT
ATTGGTGTTCTTACTGTTTTACTGGATAAAGCTCGGCATTGCGTCATGGT
TTAAACAAAAATGCCGGTTACCGGACTACTCCAACGTACAAGACAATATG
GTAGACCTTAATAATATATCATGTGGCGAAGTAATCGGTCACGGTAGTTT
TGGAACCGTGATTAAAGGTAAATATGATGAACTGGATGTTGCTTTGAAAA
TCAcgtgttttgaaaaatataaacgaTGGTTGAATGAGAAATCGATTTTA
ATGGAGAATAATGATGACTCGAATGTTATTAAACTCATCGATTATGGCGT
TAAACTTATGCAAAATGGAGAAACTTATTTGTGTTTAGTTTTGGAATACG
CCGATCTGGATTGCCTTCGTAGTCATTTACAACAAAATTCTATCAATTTA
CAGCAATGTTTACATTTAGTTTTCACCCTAACTTCTGCAGTACGTTATAT
ACATTCTGATCGCAGTGGAATGGGGTGTAAGAAATTACCAGTTGTCCATC
AGGATATTAAAAGTGCAAATGTTTTGCTATCGAGCGTGAAAGGTTCTATT
TTGGGGGATTTTGGTTTGGCATGCCAACTTGGTGATTTTCCGATATATGA
GAAATGCCAAgTTGGCACACCTCGTTACATGTCACCCGAGAAATTGAAAG
GAAACAGTCTAGATGTAGAGTTACTATTGAAAAGTGATATTTATGCACTG
GCtcttgttttttatgaaattttatcaCGATGCTACTTGGTAGATTCTCA
AGGACAACTCTATCTACCTGGGTTATATAAGACACCATTCAGCGATTGGG
TTGGTAGTAATCCTACCATAGAAACGATGCAAGAAATTGTCCTCGTCAAA
AACGTCCGACCAAAAGTCAAACAATGGTGGAGAGAAAATCAGATATTGTG
TTGTATATTGAACATTGTTGAGAAATGCTGGTCGACCGATCCTGACCAAC
GATTAGATGCATCGTCTATCTTCCGTCGCATCAGAAACATTTATTCACAG
CTAAAGTTCGAAAATCAACTCTGTTAGGGAGCagaTTGTGAGAAAAATGT
GCGTTATCGTAATCATAAAACAGCGAACTATGGGACTAGGTTCGAACAac
tgttgaaatattttgattaaaaactaaAAGCCTTTTTAATTCCAGttaat
tattttataaaattcttacaaaaaagagCGTTTAagatataaattttatt
tttagtgcTAACGTAGtatatataaaaaagacttttcatAAAAGTgcata
attattaaaatatatttctaaaaatttcagttttctaATTCATTTAAGAA
ATTAAAGGGCCCTTAGGGGGTAGTCTAGGGTAGTTATATAAAATTAAATT
GCTTCATCTGGACTAGTGAGAAAAAGTGTTTGAGGGTCACTTAAAGATAT
TCATTTTTTCCCAAGTATTTTTCCGACTATTTTCCAAGTGTTGTTAAGAA
GATGAAAAGAAGATTTTACCCACCATATCTATACTACCTTATTGCACGAA
AATAAGTAGACATGTAATTAACACGAATTAAGAAACTTCTTGTTAATTAA
AACCcctttaattaaaaccagctgtggtgtccttgaaaaagcaaataaaa
ttcgtgttatttttttgcgtgttaatttcaaggccgttgaatacttgcct
tgtaatattcgtgtaataaggtaccAGCGTATGCTTTTGTGTAAAAATTA
CACGAAGTCGACGTAGTTGGATCCTAATAAAAACTTCCATTTTTACTTTA
CAAtctaaatcaaagaaatttgtTGATACGACATCCATCCGAGGGAAGGT
TTTTCCgtccacagatatctgtaaagcccgaagggctagataagaaactt
taagctttctccagcaaaaaaagtgaagcagagattcgaatttttaaatt
tcgtgccaaTAGATAGGaaatagcattttaattgtttttggagcCCGAGA
AAGTAGTGAAATT
Run BLAST on NCBI

protein sequence of TCONS_00025559-protein

>TCONS_00025559-protein ID=TCONS_00025559-protein|Name=TCONS_00025559-protein|organism=Clytia hemisphaerica|type=polypeptide|length=403bp
MKTNLTSSRKFLIADTPHRFISTKQTPFQRIENGILPNKTGRRVDLSSQN
ITQIVLPCILIILVFLLFYWIKLGIASWFKQKCRLPDYSNVQDNMVDLNN
ISCGEVIGHGSFGTVIKGKYDELDVALKITCFEKYKRWLNEKSILMENND
DSNVIKLIDYGVKLMQNGETYLCLVLEYADLDCLRSHLQQNSINLQQCLH
LVFTLTSAVRYIHSDRSGMGCKKLPVVHQDIKSANVLLSSVKGSILGDFG
LACQLGDFPIYEKCQVGTPRYMSPEKLKGNSLDVELLLKSDIYALALVFY
EILSRCYLVDSQGQLYLPGLYKTPFSDWVGSNPTIETMQEIVLVKNVRPK
VKQWWRENQILCCILNIVEKCWSTDPDQRLDASSIFRRIRNIYSQLKFEN
QLC
Run BLAST on NCBI

transcript from alignment at sc0000539:150374..154966+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025559 ID=TCONS_00025559|Name=TCONS_00025559|organism=Clytia hemisphaerica|type=transcript|length=4593bp|location=Sequence derived from alignment at sc0000539:150374..154966+ (Clytia hemisphaerica)
tCAGTTATCACAATCGAAATCAAAAGTATAATACAAGGAATTGATGTTTT
TAACTCTATGACGCAATGAAAACCAATCTAACCTCTTCCAGAAAGTTTCT
CATCGCAGACACTCCTCATAGATTTATTTCAACCAAACAAACGCCCTTTC
AACGTATTGAAAATGGAATCCTACCCAATAAAACAGGGCGGAGGGTGGAT
TTATCGAGCCAAAACATTACTCAAATAGTTCTTCCTTGCATTTTAATAAT
ATTGGTGTTCTTACTGTTTTACTGGATAAAGCTCGGCATTGCGTCATGGT
TTAAACAAAAATGCCGGTTACCGGACTACTCCAACGTACAAGACAATATG
GTAGACCTTAATAATATATCATGTGGCGAAGTAATCGGTCACGGTAGTTT
TGGAACCGTGATTAAAGGTAAATATGATGAACTGGATGTTGCTTTGAAAA
TCAcgtgttttgaaaaatataaacgaTGGTTGAATGAGAAATCGATTTTA
ATGGAGAATAATGATGACTCGAATGTTATTAAACTCATCGATTATGGCGT
TAAACTTATGCAAAATGGAGAAACTTATTTGTGTTTAGTTTTGGAATACG
CCGATCTGGATTGCCTTCGTAGTCATTTACAACAAAATTCTATCAATTTA
CAGCAATGTTTACATTTAGTTTTCACCCTAACTTCTGCAGTACGTTATAT
ACATTCTGATCGCAGTGGAATGGGGTGTAAGAAATTACCAGTTGTCCATC
AGGATATTAAAAGTGCAAATGTTTTGCTATCGAGCGTGAAAGGTTCTATT
TTGGGGGATTTTGGTTTGGCATGCCAACTTGGTGATTTTCCGATATATGA
GAAATGCCAAGTATGATCTATCTTTAAGATTgacttattttcatattttt
ttcaccCTTTTGGTAAAGGTTCTTCAGTACAGCAATCCtctgggataaat
tttcgcgggaatagAATTTTGCAGATGACACTATTAAAGACAATGCTTCT
TTTGATACCAATTTACATTTTAAAAGTAGTTATTTGAAATTtgtgttgag
ttttgtttaaaaatatctCGCGGATAACCCCTTTCCAATATTTCCGTTGA
GAGTTAATTTCGCGGCTGACACCCAAATCCAAATTGAAATTGCTGAATGA
AAGGGAGTCATGTTTTTCTAAGGTTTATGAAATTTCTAtcctttgacttt
ttttttaggTTGGCACACCTCGTTACATGTCACCCGAGAAATTGAAAGGA
AACAGTCTAGATGTAGAGTTACTATTGAAAAGTGATATTTATGCACTGGC
tcttgttttttatgaaattttatcaCGATGCTACTTGGTAGATTCTCAAG
Gtataatacacccccttctcacagacctggtacctttttcaaccagtggg
aataaaaataacggaccaaaactcggtTGTGGGGATggatattttcatat
ttcttaTGACTAgggattgaaatttttttgttttcaagtcagaaaattca
gtggggatgggaaaaatagcataatagtttgcagtgaggattggtttata
tgattatttttaatggggacaaaaattggagaataattttccactgggga
cgatattttggagaatttttccagtgggtctgtgagaagaggatGTTAAA
ATATATGCTTTCCTTACCTTGAAGGAACTTATTTGACGAGGGacaaaaat
cgcttaaaattAAGCTTGGCGAAAACTTATAGCGAgtaacttattttctt
tttaaattttggcgtgaACTAATTTCGGCGAATGTCAGGGTAAATCAGTT
TTACTGCTCAAAAATTAGCACTTTGCCAAAAATTAGGGTTAAATTCCCCC
CGCACTCGATTTttaaacgacggcatgtgccaCCATAAATTTGGCtttta
aaatcggaccctttGCAGTTTGATtgcatatcttattttgctaaAGCAAT
CCAAAAACGAGCCTaataataaatcaaaatgaGTGGGAGTCAAAACTcga
tacatcagatttttactgtcagacttaAGGATTCAGCAGTCCAAAAGAAC
ATCATAGCAGTGTATCCAgttaaaagaagacccttgtagtgcattctatc
aaaagtacacccttacggtacatttcgagggtctcgaaaaacctttTAGA
TTATAAATTCATTCCGGATTAAATTCATGAAATTATAAACAAGTAATTGG
CGAGgcacttaaaattttaatttttgcaagAGATGACTTTTTTTTCAGGA
CAACTCTATCTACCTGGGTTATATAAGACACCATTCAGCGATTGGGTTGG
TAGTAATCCTACCATAGAAACGATGCAAGAAATTGTCCTCGTCAAAAACG
TCCGACCAAAAGTCAAACAATGGTGGAGAGAAAATCAGGTAGGGTATTAT
AATGATACTTtagaattttctgacttgatatcccttctcacagacccacc
gggaacccttcccactgaagaaattggcaaaaatatcgtcccagtggaaa
attttacccttttccccccccccccgctgaGAATAACCAGATAAGAAAAT
CCTTACTGAAAAACATTGTGCTAGTTTTTGAatccctactgaattttctg
gctagaaaacaatggaattcaagtCCCAAGCCATAAAAACATCGGAATag
caatccccatcgagttttggcgCCGTctacatagtacgtacgcactaaaa
tgtcgaaaatcggaatcggttgaagaaaatttcgaaattcatgtctggtt
cggacctttatttcatacatgaaactcaatgtttattaagagactttttc
ttttccttgatgcgtataagaagcgtaaaaatcgacaaaaaaggactatg
aaaaaattttctctgtgtACGTACATTTTTCTTTGACCACCCCCCTCACC
ccgtacgcaagcatacgcttttgagaataCTCCCCCTCCCTCCCccttta
gtgcgtacgtactatgtggacggcccctttgGTCATCTATTATACCCCAT
TAGCTGCTAAactcccaccgggtctgtgagaaagggtgtGACTTGGTAAG
ACCCCTGTATCCGGGAGCCATTGAAAACATATATTCATATATTCCCAtgc
tttttatggctggggatttcaattccattattttcaagtcagaatattca
gtggggatgggaagaATAGCagaatattttgcagtgaggattgtcTATCT
GATTTTTTTACAGCGTGGACAAATATCagagtataatttttcactgggga
cgatattttggccaattttttagTTTGTCTGTGAGAAGTGGTGTATGctg
tatgtatgtaatatgaGCGGCTCTCCTCAGTTACTTAGGAAACATTATTT
CATAATATTGTCATAGTAGCTAGATATCTGATTTGATGATACGGTAGTAA
ATCATTTCGATTTGTGTTTGTAGATATTGTGTTGTATATTGAACATTGTT
GAGAAATGCTGGTCGACCGATCCTGACCAACGATTAGATGCATCGTCTAT
CTTCCGTCGCATCAGAAACATTTATTCACAGCTAAAGTTCGAAAATCAAC
TCTGTTAGGGAGCagaattttgccatttttgacATTTCTACGACCCTGTG
AGAgccttattcaattttcaactcaaattttcgaactttggtccaaattg
cGATAAGTTATGAACTTGTGAGAAAAATGTGCGTTATCGTAATCATAAAA
CAGCGAACTATGGGACTAGGTTCGAACAactgttgaaatattttgattaa
aaactaaAAGCCTTTTTAATTCCAGttaattattttataaaattcttaca
aaaaagagCGTTTAagatataaattttatttttagtgcTAACGTAGtata
tataaaaaagacttttcatAAAAGTgcataattattaaaatatatttcta
aaaatttcagttttctaATTCATTTAAGAAATTAAAGGGCCCTTAGGGGG
TAGTCTAGGGTAGTTATATAAAATTAAATTGCTTCATCTGGACTAGTGAG
AAAAAGTGTTTGAGGGTCACTTAAAGATATTCATTTTTTCCCAAGTATTT
TTCCGACTATTTTCCAAGTGTTGTTAAGAAGATGAAAAGAAGATTTTACC
CACCATATCTATACTACCTTATTGCACGAAAATAAGTAGACATGTAATTA
ACACGAATTAAGAAACTTCTTGTTAATTAAAACCcctttaattaaaacca
gctgtggtgtccttgaaaaagcaaataaaattcgtgttatttttttgcgt
gttaatttcaaggccgttgaatacttgccttgtaatattcgtgtaataag
gtaccAGCGTATGCTTTTGTGTAAAAATTACACGAAGTCGACGTAGTTGG
ATCCTAATAAAAACTTCCATTTTTACTTTACAAtctaaatcaaagaaatt
tgtTGATACGACATCCATCCGAGGGAAGGTTTTTCCgtccacagatatct
gtaaagcccgaagggctagataagaaactttaagctttctccagcaaaaa
aagtgaagcagagattcgaatttttaaatttcgtgccaaTAGATAGGaaa
tagcattttaattgtttttggagcCCGAGAAAGTAGTGAAATT

Coding sequence (CDS) from alignment at sc0000539:150374..154966+

>TCONS_00025559 ID=TCONS_00025559|Name=TCONS_00025559|organism=Clytia hemisphaerica|type=CDS|length=4848bp|location=Sequence derived from alignment at sc0000539:150374..154966+ (Clytia hemisphaerica)
ATGAAAACCAATCTAACCTCTTCCAGAAAGTTTCTCATCGCAGACACTCC
TCATAGATTTATTTCAACCAAACAAACGCCCTTTCAACGTATTGAAAATG
GAATCCTACCCAATAAAACAGGGCGGAGGGTGGATTTATCGAGCCAAAAC
ATTACTCAAATAGTTCTTCCTTGCATTTTAATAATATTGGTGTTCTTACT
GTTTTACTGGATAAAGCTCGGCATTGCGTCATGGTTTAAACAAAAATGCC
GGTTACCGGACTACTCCAACGTACAAGACAATATGGTAGACCTTAATAAT
ATATCATGTGGCGAAGTAATCGGTCACGGTAGTTTTGGAACCGTGATTAA
AGGTAAATATGATGAACTGGATGTTGCTTTGAAAATCAcgtgttttgaaa
aatataaacgaTGGTTGAATGAGAAATCGATTTTAATGGAGAATAATGAT
GACTCGAATGTTATTAAACTCATCGATTATGGCGTTAAACTTATGCAAAA
TGGAGAAACTTATTTGTGTTTAGTTTTGGAATACGCCGATCTGGATTGCC
TTCGTAGTCATTTACAACAAAATTCTATCAATTTACAGCAATGTTTACAT
TTAGTTTTCACCCTAACTTCTGCAGTACGTTATATACATTCTGATCGCAG
TGGAATGGGGTGTAAGAAATTACCAGTTGTCCATCAGGATATTAAAAGTG
CAAATGTTTTGCTATCGAGCGTGAAAGGTTCTATTTTGGGGGATTTTGGT
TTGGCATGCCAACTTGGTGATTTTCCGATATATGAGAAATGCCAAgTTGG
CACACCTCGTTACATGTCACCCGAGAAATTGAAAGGAAACAGTCTAGATG
TAGAGTTACTATTGAAAAGTGATATTTATGCACTGGCtcttgttttttat
gaaattttatcaCGATGCTACTTGGTAGATTCTCAAGGACAACTCTATCT
ACCTGGGTTATATAAGACACCATTCAGCGATTGGGTTGGTAGTAATCCTA
CCATAGAAACGATGCAAGAAATTGTCCTCGTCAAAAACGTCCGACCAAAA
GTCAAACAATGGTGGAGAGAAAATCAGATATTGTGTTGTATATTGAACAT
TGTTGAGAAATGCTGGTCGACCGATCCTGACCAACGATTAGATGCATCGT
CTATCTTCCGTCGCATCAGAAACATTTATTCACAGCTAAAGTTCGAAAAT
CAACTCTGTTAGATGAAAACCAATCTAACCTCTTCCAGAAAGTTTCTCAT
CGCAGACACTCCTCATAGATTTATTTCAACCAAACAAACGCCCTTTCAAC
GTATTGAAAATGGAATCCTACCCAATAAAACAGGGCGGAGGGTGGATTTA
TCGAGCCAAAACATTACTCAAATAGTTCTTCCTTGCATTTTAATAATATT
GGTGTTCTTACTGTTTTACTGGATAAAGCTCGGCATTGCGTCATGGTTTA
AACAAAAATGCCGGTTACCGGACTACTCCAACGTACAAGACAATATGGTA
GACCTTAATAATATATCATGTGGCGAAGTAATCGGTCACGGTAGTTTTGG
AACCGTGATTAAAGGTAAATATGATGAACTGGATGTTGCTTTGAAAATCA
cgtgttttgaaaaatataaacgaTGGTTGAATGAGAAATCGATTTTAATG
GAGAATAATGATGACTCGAATGTTATTAAACTCATCGATTATGGCGTTAA
ACTTATGCAAAATGGAGAAACTTATTTGTGTTTAGTTTTGGAATACGCCG
ATCTGGATTGCCTTCGTAGTCATTTACAACAAAATTCTATCAATTTACAG
CAATGTTTACATTTAGTTTTCACCCTAACTTCTGCAGTACGTTATATACA
TTCTGATCGCAGTGGAATGGGGTGTAAGAAATTACCAGTTGTCCATCAGG
ATATTAAAAGTGCAAATGTTTTGCTATCGAGCGTGAAAGGTTCTATTTTG
GGGGATTTTGGTTTGGCATGCCAACTTGGTGATTTTCCGATATATGAGAA
ATGCCAAgTTGGCACACCTCGTTACATGTCACCCGAGAAATTGAAAGGAA
ACAGTCTAGATGTAGAGTTACTATTGAAAAGTGATATTTATGCACTGGCt
cttgttttttatgaaattttatcaCGATGCTACTTGGTAGATTCTCAAGG
ACAACTCTATCTACCTGGGTTATATAAGACACCATTCAGCGATTGGGTTG
GTAGTAATCCTACCATAGAAACGATGCAAGAAATTGTCCTCGTCAAAAAC
GTCCGACCAAAAGTCAAACAATGGTGGAGAGAAAATCAGATATTGTGTTG
TATATTGAACATTGTTGAGAAATGCTGGTCGACCGATCCTGACCAACGAT
TAGATGCATCGTCTATCTTCCGTCGCATCAGAAACATTTATTCACAGCTA
AAGTTCGAAAATCAACTCTGTTAGATGAAAACCAATCTAACCTCTTCCAG
AAAGTTTCTCATCGCAGACACTCCTCATAGATTTATTTCAACCAAACAAA
CGCCCTTTCAACGTATTGAAAATGGAATCCTACCCAATAAAACAGGGCGG
AGGGTGGATTTATCGAGCCAAAACATTACTCAAATAGTTCTTCCTTGCAT
TTTAATAATATTGGTGTTCTTACTGTTTTACTGGATAAAGCTCGGCATTG
CGTCATGGTTTAAACAAAAATGCCGGTTACCGGACTACTCCAACGTACAA
GACAATATGGTAGACCTTAATAATATATCATGTGGCGAAGTAATCGGTCA
CGGTAGTTTTGGAACCGTGATTAAAGGTAAATATGATGAACTGGATGTTG
CTTTGAAAATCAcgtgttttgaaaaatataaacgaTGGTTGAATGAGAAA
TCGATTTTAATGGAGAATAATGATGACTCGAATGTTATTAAACTCATCGA
TTATGGCGTTAAACTTATGCAAAATGGAGAAACTTATTTGTGTTTAGTTT
TGGAATACGCCGATCTGGATTGCCTTCGTAGTCATTTACAACAAAATTCT
ATCAATTTACAGCAATGTTTACATTTAGTTTTCACCCTAACTTCTGCAGT
ACGTTATATACATTCTGATCGCAGTGGAATGGGGTGTAAGAAATTACCAG
TTGTCCATCAGGATATTAAAAGTGCAAATGTTTTGCTATCGAGCGTGAAA
GGTTCTATTTTGGGGGATTTTGGTTTGGCATGCCAACTTGGTGATTTTCC
GATATATGAGAAATGCCAAgTTGGCACACCTCGTTACATGTCACCCGAGA
AATTGAAAGGAAACAGTCTAGATGTAGAGTTACTATTGAAAAGTGATATT
TATGCACTGGCtcttgttttttatgaaattttatcaCGATGCTACTTGGT
AGATTCTCAAGGACAACTCTATCTACCTGGGTTATATAAGACACCATTCA
GCGATTGGGTTGGTAGTAATCCTACCATAGAAACGATGCAAGAAATTGTC
CTCGTCAAAAACGTCCGACCAAAAGTCAAACAATGGTGGAGAGAAAATCA
GATATTGTGTTGTATATTGAACATTGTTGAGAAATGCTGGTCGACCGATC
CTGACCAACGATTAGATGCATCGTCTATCTTCCGTCGCATCAGAAACATT
TATTCACAGCTAAAGTTCGAAAATCAACTCTGTTAGATGAAAACCAATCT
AACCTCTTCCAGAAAGTTTCTCATCGCAGACACTCCTCATAGATTTATTT
CAACCAAACAAACGCCCTTTCAACGTATTGAAAATGGAATCCTACCCAAT
AAAACAGGGCGGAGGGTGGATTTATCGAGCCAAAACATTACTCAAATAGT
TCTTCCTTGCATTTTAATAATATTGGTGTTCTTACTGTTTTACTGGATAA
AGCTCGGCATTGCGTCATGGTTTAAACAAAAATGCCGGTTACCGGACTAC
TCCAACGTACAAGACAATATGGTAGACCTTAATAATATATCATGTGGCGA
AGTAATCGGTCACGGTAGTTTTGGAACCGTGATTAAAGGTAAATATGATG
AACTGGATGTTGCTTTGAAAATCAcgtgttttgaaaaatataaacgaTGG
TTGAATGAGAAATCGATTTTAATGGAGAATAATGATGACTCGAATGTTAT
TAAACTCATCGATTATGGCGTTAAACTTATGCAAAATGGAGAAACTTATT
TGTGTTTAGTTTTGGAATACGCCGATCTGGATTGCCTTCGTAGTCATTTA
CAACAAAATTCTATCAATTTACAGCAATGTTTACATTTAGTTTTCACCCT
AACTTCTGCAGTACGTTATATACATTCTGATCGCAGTGGAATGGGGTGTA
AGAAATTACCAGTTGTCCATCAGGATATTAAAAGTGCAAATGTTTTGCTA
TCGAGCGTGAAAGGTTCTATTTTGGGGGATTTTGGTTTGGCATGCCAACT
TGGTGATTTTCCGATATATGAGAAATGCCAAgTTGGCACACCTCGTTACA
TGTCACCCGAGAAATTGAAAGGAAACAGTCTAGATGTAGAGTTACTATTG
AAAAGTGATATTTATGCACTGGCtcttgttttttatgaaattttatcaCG
ATGCTACTTGGTAGATTCTCAAGGACAACTCTATCTACCTGGGTTATATA
AGACACCATTCAGCGATTGGGTTGGTAGTAATCCTACCATAGAAACGATG
CAAGAAATTGTCCTCGTCAAAAACGTCCGACCAAAAGTCAAACAATGGTG
GAGAGAAAATCAGATATTGTGTTGTATATTGAACATTGTTGAGAAATGCT
GGTCGACCGATCCTGACCAACGATTAGATGCATCGTCTATCTTCCGTCGC
ATCAGAAACATTTATTCACAGCTAAAGTTCGAAAATCAACTCTGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014345XLOC_014345Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025559-exon-sc0000539-1491911889:150374..151233TCONS_00025559-exon-sc0000539-1491911889:150374..151233Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1510915933:150374..151233TCONS_00025559-exon-sc0000539-1510915933:150374..151233Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1575043694:150374..151233TCONS_00025559-exon-sc0000539-1575043694:150374..151233Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1491911889:151582..151723TCONS_00025559-exon-sc0000539-1491911889:151582..151723Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1510915933:151582..151723TCONS_00025559-exon-sc0000539-1510915933:151582..151723Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1575043694:151582..151723TCONS_00025559-exon-sc0000539-1575043694:151582..151723Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1491911889:152622..152761TCONS_00025559-exon-sc0000539-1491911889:152622..152761Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1510915933:152622..152761TCONS_00025559-exon-sc0000539-1510915933:152622..152761Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1575043694:152622..152761TCONS_00025559-exon-sc0000539-1575043694:152622..152761Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1491911889:153797..153939TCONS_00025559-exon-sc0000539-1491911889:153797..153939Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1510915933:153797..153939TCONS_00025559-exon-sc0000539-1510915933:153797..153939Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1575043694:153797..153939TCONS_00025559-exon-sc0000539-1575043694:153797..153939Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1491911889:154039..154966TCONS_00025559-exon-sc0000539-1491911889:154039..154966Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1510915933:154039..154966TCONS_00025559-exon-sc0000539-1510915933:154039..154966Clytia hemisphaericaexon
TCONS_00025559-exon-sc0000539-1575043694:154039..154966TCONS_00025559-exon-sc0000539-1575043694:154039..154966Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025559-proteinTCONS_00025559-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000539supercontigsc0000539:150374..154966 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.26611	1.47927	0.772198	0.841373	0.362701	0.120204	0.224835	0.280231	0.306322	0.241469	0.216777	0.355703	0.188592	0.226194	0.22699	0.185058	0.15455	0.33361	0.202406	0.167856	0.358454	0.445218	0.423755	0.633012	0.443864	0.687216	0.19252	0.0293048	0.201068	0.341819
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR017441Protein_kinase_ATP_BS
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00025559 vs. Swiss-Prot (Human)
Match: AVR2B (Activin receptor type-2B OS=Homo sapiens GN=ACVR2B PE=1 SV=3)

HSP 1 Score: 152.91 bits (385), Expect = 2.192e-39
Identity = 107/352 (30.40%), Postives = 170/352 (48.30%), Query Frame = 3 
Query:  228 VLPCILIILVFLLFYWIKLGIASWFKQKCRLPDYSNVQ----------DNMVDLNNISCGEVIGHGSFGTVIKGKYDELDVALKITCFEKYKRWLNEKSIL-MENNDDSNVIKLIDYGVKLMQNGETYLCLVLEYADLDCLRSHLQQNSINLQQCLHLVFTLTSAVRYIHSDRS---GMGCKKLPVVHQDIKSANVLLSSVKGSILGDFGLACQL--GDFPIYEKCQVGTPRYMSPEKLKGN-SLDVELLLKSDIYALALVFYEILSRCYLVDSQGQLYLPGLYKTPFSDWVGSNPTIETMQEIVLVKNVRPKVKQWWRENQILCCILNIVEKCWSTDPDQRLDASSIFRRI 1232
            +LP   + L+ LL +W+          + R P Y +V             +V L  +   E+   G FG V K +     VA+KI   +  + W +E+ I         N+++ I    K   N E  L L+  + D   L  +L+ N I   +  H+  T++  + Y+H D     G G  K  + H+D KS NVLL S   ++L DFGLA +   G  P     QVGT RYM+PE L+G  +   +  L+ D+YA+ LV +E++SRC   D     Y+      PF + +G +P++E +QE+V+ K +RP +K  W ++  L  +   +E+CW  D + RL A  +  R+
Sbjct:  143 LLPIGGLSLIVLLAFWM---------YRHRKPPYGHVDIHEDPGPPPPSPLVGLKPLQLLEIKARGRFGCVWKAQLMNDFVAVKIFPLQDKQSWQSEREIFSTPGMKHENLLQFI-AAEKRGSNLEVELWLITAFHDKGSLTDYLKGNIITWNELCHVAETMSRGLSYLHEDVPWCRGEG-HKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVSRCKAADGPVDEYM-----LPFEEEIGQHPSLEELQEVVVHKKMRPTIKDHWLKHPGLAQLCVTIEECWDHDAEARLSAGCVEERV 478
The following BLAST results are available for this feature:
BLAST of TCONS_00025559 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AVR2B2.192e-3930.40Activin receptor type-2B OS=Homo sapiens GN=ACVR2B... [more]
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