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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025624 ID=TCONS_00025624|Name=TCONS_00025624|organism=Clytia hemisphaerica|type=transcript|length=9034bp transcript from alignment at sc0000541:60410..83134+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025624 ID=TCONS_00025624|Name=TCONS_00025624|organism=Clytia hemisphaerica|type=transcript|length=22725bp|location=Sequence derived from alignment at sc0000541:60410..83134+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00025624 vs. Swiss-Prot (Human)
Match: PKHL1 (Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2) HSP 1 Score: 625.55 bits (1612), Expect = 1.965e-180 Identity = 358/856 (41.82%), Postives = 495/856 (57.83%), Query Frame = 2
Query: 362 ISPNRGSIYGGNIVKLTLIGASYTMNAKITFRDAIDDCEITERNQYVVLCRVPPRNVAGTS----------LITYPGGFFTGNYVYEDASTPQITGMGTNQNGRKRRSVSTVNGGYGDTLTIDYVNTGSNNTEDYKIYIDGKDLCNVTNVDTTSITCTLDHYPAGTYNLSVLVAGKGFS-NPLLIAYELAASNPASNEGSYGGGRLVEIVGKGFSMETGV-SICGASCIVQDVTYG-TTLQCLTSMLPDYESQSGDVPCDVIITEGSESVTLSNSFTYKESLTSYITDVSPRRFGTGGGKKIVISGSNFKGGSE---VSIAGIECELRSVTATKIECITKPSKKTHMDIDLVVSSAAAGHAIPQNASVDYVDVWSSPFTWGGGPLPSAGAYVVISTGQTLLLDMDTPVLFFLLIDGGTVIFDDKDLHLQAEHILIAKNGSLMVGTEEKRFEHKAIITLHGNVTSQELPVYGAKSISLRTGYLGLHGQHILNTWTRLSKTAEAGATEIYVTVPVPDWKVGSEIVIAST--SKSLRENEAVFIKGVTNDGNTIEIDRPLAFKHIALTQTIA-GRTIETAAEVGLLTRNVVIRGSSNENWKDAIPPCPKNYNPDQFATQKCFEGNYGRPFGSDQFGVQIMVHSNQKDSRLALAHFNHIEIYNAGQAYRLGRYPIHFHMDGDVT-GSYVEGCAIHRSHNRAVTMHGIHGLRVERNVIYDILGNAYFMEDGIETGNFIRYNLAVMVTLSSSGLNVDLTPAAYWVTNANNTVSHNAAAGCSHFGYWYQMFHHPEGPNYDPNICPRNVPMLEFKNNTAHTLGRYGLWVFPIYHPMAGGGCDSKVHEPAHFHGLTIWHALRAAE 2869
+SP GSI GG + +T G Y N +T D + C+I N V CR P AGT+ I YP FT Y ED TP + G+ ++ G + +G I ++ NN + CNVT + + + C + + GT+ + + KG + + ++ Y L N ++GS+GGG+ + + G GF+ + + +CG+ C + + TTL C +P + C+V + G + FTY SLT IT VSP+R T GG ++ + GS F E ++IA +C++ T I C+T + + V G A NA YVD WSS F+WGG P G+ VVI+ GQT+LLD TP+L LLI GGT+IFD+ D+ LQAE+ILI G L +GTE F+HKA+ITLHG++ S ELPVYGAK++++R G L LHG + TWTRL+ TA+AG I + WK G IVIAST S ENE + I V+ DG I + PL + H+ +T T+ G E AEVG+LTRN++IRGS N W + IP CP ++ +FATQ C +G +G GSDQFG +M H+ + + ++E+++AGQA+RLGRYPIH+H+ GD+ SYV GCAIH+++NRAVT+H H L VERN+IYDI G A+F+EDGIE GN ++YNLAV V S+S LN D+TPAA+WVTN NNT+ HNA AG +HFG+WY+M +HP+GP+YD NIC + VP+ EF NNT H+ G +G+W+F Y PM G C S V PA F+ LT W+ + AE
Sbjct: 1836 LSPTSGSIGGGTTLVITGNGF-YPGNTTVTIGD--EPCQIISINPNEVYCRTP----AGTTGMVDVKIFVNTIAYPPLLFT--YALED--TPFLRGIIPSR-GPPGTEIEITGSNFG--FEILEISVMINNIQ-----------CNVTMANDSVVQCIVGDHAGGTFPVMMHHKTKGSAMSTVVFEYPLNIQNINPSQGSFGGGQTMTVTGTGFNPQNSIILVCGSECAIDRLRSDYTTLLC---EIPSNNGTGAEQACEVSVVNGKDLSQSMTPFTYAVSLTPLITAVSPKRGSTAGGTRLTVVGSGFSENMEDVHITIAEAKCDVEYSNKTHIICMTDAHTLSGW-APVCVHIRGVGMAKLDNADFLYVDAWSSNFSWGGKSPPEEGSLVVITKGQTILLDQSTPILKMLLIQGGTLIFDEADIELQAENILITDGGVLQIGTETSPFQHKAVITLHGHLRSPELPVYGAKTLAVREGILDLHGVPVPVTWTRLAHTAKAGE-RILILQEAVTWKPGDNIVIASTGHRHSQGENEKMTIASVSADGINITLSNPLNYTHLGITVTLPDGTLFEARAEVGILTRNILIRGSDNVEWNNKIPACPDGFDTGEFATQTCLQGKFGEEIGSDQFGGCVMFHAPVPGANMVTGRIEYVEVFHAGQAFRLGRYPIHWHLLGDLQFKSYVRGCAIHQAYNRAVTIHNTHHLLVERNIIYDIKGGAFFIEDGIEHGNILQYNLAVFVQQSTSLLNDDVTPAAFWVTNPNNTIRHNAVAGGTHFGFWYRMNNHPDGPSYDRNICQKRVPLGEFFNNTVHSQGWFGMWIFEEYFPMQTGSCTSTVPAPAIFNSLTTWNCQKGAE 2661 HSP 2 Score: 497.278 bits (1279), Expect = 7.474e-141 Identity = 335/1014 (33.04%), Postives = 523/1014 (51.58%), Query Frame = 1
Query: 2881 GLWVFPIYHPMAGGGCDSKVHEPAHFHGLTIWHALRAAECLECGSIRFDDLISLDNDISGVEYVEANAE-DSPWG---GATVQNSLIVGHSQLRDIGAYKLGHSDQQRCTMHGIWLPRTSRLTISNVDFVNFDEDECTAFGTCA---HCKPDDGASFVRAEGIRYTNTSNLINFPHAHATIVEDLDGSLTGTKGGSLVPKMGFLDPAVCTDNPGASFGITPGVTC-TSGRFAKVAFNQVTPSSISERTAFFNNSLGTDKVRYREKAISHPNGYTAFLPLNTNDPVDISFDRSQHLTNISYSMTITEMKPTDYAYIKHTFYQVPDSFATGNGRRNSTVSLPNPSSDKHGDWYYTEAEQEMTYLVKG----------TGNETKPDEKP--ITYRVYRCFFDKCV---APTAPPIPDGRPATFKKWSEKSDWTSG-----VVPTANQNVTIEADWYMVQDSTDEILLDRLYIFGVLELEPSID--------HVIKAKXXXXXXXXXXXXXXYADTPMVSNVLIGLIGNQKSPDMPINNGPNVGAKALAVFGRLQLLGMSHDVYWTYLASTVNVGETSITLTESVDWAIGDVILITTTTFESKQTEKLTIAXXXXXXXXXXXXXXXQYRH--STHNLPTGFGPFKRMSAKVALITRNIRIEGLDNPSGSLDDQSFGCRVLVGKYTQGGITYSGDAQLRDVQFSNCGQLGFNENWDPRYSLAFMNIGEI-DGNASFVSGCSFNDGYNVGIGVYGTHNLTIENNVIYRSVGPAIDLEGRNNKVVHNLMTTALSIQTFRVSEVYASADLNWDGALNLEKAKDFTVVGNSIAGSEKVGIRFPGVPCEEE---SQRVYGNEVHSNLHGLHFKARS-PHCWKADNFLIWKNLDYGIFTWPDKSVVISNSILADNKVSLALHVFGPQVLRHQYGKETITVKDSILIGQSSSFDCTQDAIIPD--HAAKYPVRRRPLPPGKGNVGMKASIFSNNPSTGPKMSWEDPMFYPSISGLTTFQNVKFKDF 5787
G+W+F Y PM G C S V PA F+ LT W+ + AE + G+++F + + ++N +G+E A WG GA ++N+ IVGH +G+ CT G+ LP + LT+S+V F+NFD C A G + C G + ++Y++T N F H ++ D+DGSLTG KG +++P LDP+ CT S G PG C S F ++AFNQ +P S+ E+ ++S GT + +++K ++H +G+ A +P N N ++ F H+TNISY+ T K DY I H F Q PD F + R S+ L N ++ K+GDW+ + YLV G +GN PD K I ++ Y C C P+ PIP RPAT+ WS S W S VP NV I ++V D D ++RL I+GVLELE + + +IS GG LI G+ D P ++ I L GN + D + GPN GAK L VFG L L G+ H +Y T L+ T G ++L ++VDW G+ I+ITTT+++ QTE +I + + K + + Y H +++P G G ++A V +++RNI+I G D P S D SFG RVLVG +T+ +T+ G+A++ +V+F + GQ GF ++ DPRY++ F+N+G+I + +S++ GC+F+ G++ IGV+GT L I++N+I+ +VG I + G N+V NL+ ++ T++ + +S W A+ + + + + N +AG + G R G PC + ++ + NE H L+G++ P C F IW DYGI+ +SV I N L DN +++ ++ P + H+ + + +K S+++G S F+C+ D + D + R P P G G+ F++ + P+ M Y +ISGL F F
Sbjct: 2623 GMWIFEEYFPMQTGSCTSTVPAPAIFNSLTTWNCQKGAEWVNGGALQFHNFVMVNNYEAGIETKRILAPYVGGWGETNGAVIKNAKIVGHLDELGMGS--------AFCTAKGLVLPFSEGLTVSSVHFMNFDRPNCVALGVTSISGVCNDRCGGWSAKFVDVQYSHTPNKAGFRWEHEMVMIDVDGSLTGHKGHTVIPHSSLLDPSHCTQEAEWSIGF-PGSVCDASVSFHRLAFNQPSPVSLLEKDVVLSDSFGTSIIPFQKKRLTHMSGWMALIP-NANH-INWYFKGVDHITNISYTSTFYGFKEEDYVIISHNFTQNPDMFNIIDMRNGSSNPL-NWNTSKNGDWHLEANTSTLYYLVSGRNDLHQSQLISGN-LDPDVKDVVINFQAYCCILQDCFPVHPPSRKPIPKKRPATYNLWSNDSFWQSSRENNYTVPHPGANVIIPEGTWIVAD-IDMPSMERLIIWGVLELEDKYNVGAAESSYREVVLNATYISLQGGRLIGGWEDNPFKGDLKIVLRGNHTTQDWALPEGPNQGAKVLGVFGELDLHGIPHSIYKTKLSETAFAGSKVLSLMDAVDWQEGEEIVITTTSYDFHQTETRSIVKILHDHKILILNDSLSYTHFAEKYHVP-GTGESYTLAADVGILSRNIKIVGEDYPGWSED--SFGARVLVGSFTENMMTFKGNARISNVEFYHSGQEGFRDSTDPRYAVTFLNLGQIQEHGSSYIRGCAFHHGFSPAIGVFGTDGLDIDDNIIHFTVGEGIRIWGNANRVRGNLIALSVWPGTYQNRKDLSSTL--WHAAIEINRGTNTVLQNNVVAGFGRAGYRIDGEPCPGQFNPVEKWFDNEAHGGLYGIYMNQDGLPGCSLIQGFTIWTCWDYGIYFQTTESVHIYNVTLVDNGMAIFPMIYMPAAISHKISSKNVQIKSSLIVGSSPGFNCS-DVLTNDDPNIELTAAHRSPRSPSGGRSGICWPTFASAHNMAPRKPHAGIMSYNAISGLLDISGSTFVGF 3616 HSP 3 Score: 308.916 bits (790), Expect = 1.467e-83 Identity = 174/412 (42.23%), Postives = 249/412 (60.44%), Query Frame = 2
Query: 5798 SISGLTTFQNVKFKDFSSGCNGANNYVWMTSPVYGDILHPTDFKNITLENVGEVNKIYHHAMTTRWINPSDCVDMDCDARRKVLLTNDDGSFFGENGISAISKSEFGWGGDRKWGLNNRRIPKTLLATPSGGRLNADATYPNKGIDRHGGNCVFRSDWRMYRCKDMKYRMFVFESLDKDTEIRRLSPIALATRDGYIDLINGPQDHGWCHGYTCQERVSMFQMIVNMHRHYDLYLTSYNPQKTRLMILNAEEEDAIRLAIYYPKPQRLDIYRLGLYIRPN----NAVVKNGDLSFAPYPADDPDKYLPDTRSFAAG-NWFDEKKNLLYVVVKGKEPVRIVTVPIIQLRIGLSSSKALDEDEFFGPNLAKNIAAFFKIDPKKIFRMNVVSAGEGXXXXXATGSFTVEIDIGDP 7018
+ISGL F F + C+G N +++T+P+ D+ HP KNI L + E +KI+ H +NPSDCVDM CDA+RK L + DGSF G G S I ++E+ W G+ + G+ + RIPK +L +G R+ P+KGI R C + +W+ Y+C M+Y M V ESLD DTE RRLSP+A+ +GY+DLINGPQDHGWC GYTCQ R+S+F IV +++ Y++Y T +PQ RLM+LN + A+ + I++ QRLD+Y L + P NA K+ +L+ Y D++LP+ S G N+FD +LY++VKG PV I T +I + LS A ++D + NL KN+A F KI KI R++ + G+ RR+R+ G F +EI+IGDP
Sbjct: 3601 AISGLLDISGSTFVGFKNVCSGETNVIFITNPLNEDLQHPIHVKNIKLVDTTEQSKIFIHRPDISKVNPSDCVDMVCDAKRKSFLRDIDGSFLGNAG-SVIPQAEYEWDGNSQVGIGDYRIPKAMLTFLNGSRIPVTEKAPHKGIIRDS-TCKYLPEWQSYQCFGMEYAMMVIESLDPDTETRRLSPVAIM-GNGYVDLINGPQDHGWCAGYTCQRRLSLFHSIVALNKSYEVYFTGTSPQNLRLMLLNVDHNKAVLVGIFFSTLQRLDVYVNNLLVCPKTTIWNAQQKHCELNNHLY----KDQFLPNLDSTVLGENYFDGTYQMLYLLVKGTIPVEIHTATVIFVSFQLSV--ATEDDFYTSHNLVKNLALFLKIPSDKI-RISKIR-GKSLRRKRSMG-FIIEIEIGDP 4000 HSP 4 Score: 116.316 bits (290), Expect = 2.613e-25 Identity = 140/525 (26.67%), Postives = 224/525 (42.67%), Query Frame = 2
Query: 1397 IPQNASVDYVDVWSSPFTWGGG-----PLPSAGAYVVISTGQTLLLDMDTPVLFFLLIDGGTVIFDD----------KDLHLQAEHILIAKNGSLMVGTEEKRFEHKAIITLHGNVTSQ-----ELPVYGAKSISLRTGYLGLHGQHILNTWTRLSKTAEAGATEIYVTVPVPDWKVGSEIVIASTSKSLRENEAVFIKGVTNDGNTIEIDRPLAFKHIALTQTI--AGRTIETAAEVGLLTRNVVIRGSSNENWKDAIPPCPKNYNPDQFATQKCFEGNYGRPFGSDQFGVQIMVHSNQKD--SRLALAHFNHIEIYNAGQ-AYRLG---RYPIHFHMDGDVT---GSYVEGCAIHRSHNRAVTMHGIHGLRVERNVIYDILGNAYFMEDGIE---TGNFIRYNLAVMVTL-----SSSGLNVDLTPAAYWVTNANNTV-SHNAAAGCSHFGYWYQMFHHPEGPNYDPNICPRNV-PMLEFKNNTAHTLGRYGLWVFPIYHPMAGGGCDSKVHEPAHFHGLTIW 2848
IP+ Y ++WS+ W +P GA V+I G ++ D+D P + L+I G + D +++ L A +I + + G L+ G E+ F+ I L GN T+Q E P GAK + + G L LHG T+LS+TA AG+ + + V DW+ G EIVI +TS + E I + +D + ++ L++ H A + G + AA+VG+L+RN+ I G W + D FG +++V S ++ + A +++E Y++GQ +R RY + F G + SY+ GCA H + A+ + G GL ++ N+I+ +G +GI N +R NL + + L+ L AA + NTV +N AG GY D CP P+ ++ +N AH G YG+++ P GC + G TIW
Sbjct: 3021 IPKKRPATY-NLWSNDSFWQSSRENNYTVPHPGANVIIPEGTWIVADIDMPSMERLIIWGVLELEDKYNVGAAESSYREVVLNATYISL-QGGRLIGGWEDNPFKGDLKIVLRGNHTTQDWALPEGPNQGAKVLGV-FGELDLHGIPHSIYKTKLSETAFAGSKVLSLMDAV-DWQEGEEIVITTTSYDFHQTETRSIVKILHDHKILILNDSLSYTHFAEKYHVPGTGESYTLAADVGILSRNIKIVGEDYPGWSE------------------------------DSFGARVLVGSFTENMMTFKGNARISNVEFYHSGQEGFRDSTDPRYAVTFLNLGQIQEHGSSYIRGCAFHHGFSPAIGVFGTDGLDIDDNIIHFTVG------EGIRIWGNANRVRGNLIALSVWPGTYQNRKDLSSTLWHAAIEINRGTNTVLQNNVVAGFGRAGY-----------RIDGEPCPGQFNPVEKWFDNEAHG-GLYGIYMNQDGLP----GC-------SLIQGFTIW 3482 The following BLAST results are available for this feature:
BLAST of TCONS_00025624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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