TCONS_00025635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025635
Unique NameTCONS_00025635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length932

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025635 ID=TCONS_00025635|Name=TCONS_00025635|organism=Clytia hemisphaerica|type=transcript|length=932bp
GTCCTGCCAACTTGGCAGAAGATTCTCTTACGGTGGTGTAATCAGAATTT
GATTAGTCTACTCGACCTAAGAATTAATCTCTAAGTCTCCCATGCGTTTT
CGGTCAATGGTGACCCCATTGTATCGtttctcttttcattttttagagCT
ATTCGTGAAAGTCGTTACACTTGCTGTTGACCCACCAATTGTTGGATTCT
AACTAACTCATTTAAACAAGTTTATAAAATCTAAAAAGTACATTTGAACA
TTCACTTGGTCAAATTTGGTATCATGGAAAAGACATTGATTGAAGGACCA
CTCGTACAATTTAGTTACTTTTACAACCCCCGTACAACCAGAACGTCGAA
ACGAAAGTTGCACGAAGGTTTCTGCAACTCATAGATAAGCACTTTCCAAA
ACACCACAGACTCAACAAAATATTCAACCGCAACACTGTCAAAGTCAGCT
ATAGTTGcaccaaaaacatgaaaaatatcataCAGAGTCACAATAAAAAC
ATCCTGAAAGACGAAGCAAACGAGAACGTAGACAACCGATTATGTAACTG
CAGGGTAAAAGCCAACTGTCCCTTTAACGGATCGTGTTTAGTTGAGCGAT
CAGTATACGAAGCCACGGTGACATGCGAGGAAGAACCAGATTATGACGAG
AAGTTTTAAATCGGACTTGCCGAACCTGCTTTCAAAAAACGTTTCGCAAA
CCACAAGTCTTCTTTCGCAAACCACCGCTACGAAAAAGAGACGGAATTGT
CAAATTGGAGGTTAAAACGAAAAAACCTATCGCCAAAAATCGCATGGAAA
ACCATCCGACAGTGCCCACCGTTCAACCGTTCGTCGCTGAAATGCTCACT
TTGTCTCGAGGAGAAACTTGAAATCGCTACATTTCCGAACTCGGACAAGC
TTTTGAATTCCAGGAATGAACTGATTTCAAAA
Run BLAST on NCBI

transcript from alignment at sc0000541:9401..11339-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025635 ID=TCONS_00025635|Name=TCONS_00025635|organism=Clytia hemisphaerica|type=transcript|length=1939bp|location=Sequence derived from alignment at sc0000541:9401..11339- (Clytia hemisphaerica)
GTCCTGCCAACTTGGCAGAAGATTCTCTTACGGTGGTGTAATCAGAATTT
GATTAGTCTACTCGACCTAAGAATTAATCTCTAAGTCTCCCATGCGTTTT
CGGTCAATGGTGACCCCATTGTATCGTTTCTCTTTTCATTTTTTAGAGCT
ATTCGTGAAAGTCGTTACACTTGCTGTTGACCCACCAATTGTTGGATTCT
AACTAACTCATTTAAACAAGTTTATAAAATCTAAAAGTAAGTAGTTAAAG
CTGCTTGATAACTGCTTGTGGTGCTAAGAAAGGGAATTTCCTTAAGATAA
GGGGATTTCCCAAATTGTAGTAAAAAATTGAAACAATCAAATTTAATTTG
AACATGACACTCGCAGACATCATTATTGTTTGCTTAATTTCTTTCTTTGT
CCTGTCTATGGTACATGCAATAATGATGACTTTTCCAATTCCTTTCCTTT
TATTTTTGTTCCTTTCTTTGCTCTTTTTTTCCATTTATAAATTCATTTAC
TTCTCATCTTTTTTTGGACCTACCTCGGAGGCCCTCAAAGTTAGCCTTGT
TAGTTCGTCCGTTTGCGCGTTCGTCTGTTATCAGCTTTTCTCGGGAATGG
CTCATTAGTTTTTTCTGATATTTTGCACAGTGATGCAAAATGGTGATTCC
CAAAAAGTAACGGAGCCCGATTTTCGAAAAAAGAAATTTTCCGGCTGAAA
ATGATGTCATGTCAAAATCATGTTTTCATACAAAATTAGTCTCTGGTACT
GTATTTTCTGTCCCATTGGTCATATCTTTTATAATACCCAAGTGTGCTTA
AAATCAACAAAATGGGGGGGGGGGGGGGGCATAATTAAGTGCTATTGACC
TGATTTTGCTAAAAATCCTCCTCTATTTGTCTTCATTACTTTCGCTCTCT
GGCAACCAATTTCCCAGGTTAATGTATTCACTATCTTCTCAACCTTCCCC
TCTTCTCAATCTTATTACTGACTCTTGGTTTGAATCTTTGCCAGTCTTGA
CTGTTCAAGGTGAATCTGTTCTGCACAAAGCATTGTGGGGAATTCTCGGA
GGTCAAATCTGAGTTTTCACGTTATGCCGATATCGTCTATTCTCGCAGAT
ACTTTGTAAGCCGACACAAAAATGTTGAGAATCGCGAAAATCTGCGAGCT
ATTTTTCCAACTTTCTTAAGCGATAATGCCATCCTCTGGAGCTTTAAAAG
AAAAAGATAAAAAATAGAAATTATTCTACCTTTCAATTTTTAGAGTACAT
TTGAACATTCACTTGGTCAAATTTGGTATCATGGAAAAGACATTGATTGA
AGGACCACTCGTACAATTTAGTTACTTTTACAACCCCCGTACAACCAGAA
CGTCGAAACGAAAGTTGCACGAAGGTTTCTGCAACTCATAGATAAGCACT
TTCCAAAACACCACAGACTCAACAAAATATTCAACCGCAACACTGTCAAA
GTCAGCTATAGTTGCACCAAAAACATGAAAAATATCATACAGAGTCACAA
TAAAAACATCCTGAAAGACGAAGCAAACGAGAACGTAGACAACCGATTAT
GTAACTGCAGGGTAAAAGCCAACTGTCCCTTTAACGGATCGTGTTTAGTT
GAGCGATCAGTATACGAAGCCACGGTGACATGCGAGGAAGAACCAGATTA
TGACGAGAAGTTTTAAATCGGACTTGCCGAACCTGCTTTCAAAAAACGTT
TCGCAAACCACAAGTCTTCTTTCGCAAACCACCGCTACGAAAAAGAGACG
GAATTGTCAAATTGGAGGTTAAAACGAAAAAACCTATCGCCAAAAATCGC
ATGGAAAACCATCCGACAGTGCCCACCGTTCAACCGTTCGTCGCTGAAAT
GCTCACTTTGTCTCGAGGAGAAACTTGAAATCGCTACATTTCCGAACTCG
GACAAGCTTTTGAATTCCAGGAATGAACTGATTTCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014388XLOC_014388Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025635-exon-sc0000541-1575043694:11104..11339TCONS_00025635-exon-sc0000541-1575043694:11104..11339Clytia hemisphaericaexon
TCONS_00025635-exon-sc0000541-1575043694:9401..10096TCONS_00025635-exon-sc0000541-1575043694:9401..10096Clytia hemisphaericaexon
TCONS_00025635-exon-sc0000541-1510915933:11104..11339TCONS_00025635-exon-sc0000541-1510915933:11104..11339Clytia hemisphaericaexon
TCONS_00025635-exon-sc0000541-1510915933:9401..10096TCONS_00025635-exon-sc0000541-1510915933:9401..10096Clytia hemisphaericaexon
TCONS_00025635-exon-sc0000541-1491911889:11104..11339TCONS_00025635-exon-sc0000541-1491911889:11104..11339Clytia hemisphaericaexon
TCONS_00025635-exon-sc0000541-1491911889:9401..10096TCONS_00025635-exon-sc0000541-1491911889:9401..10096Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000541supercontigsc0000541:9401..11339 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.767164	0.894621	0.7828	0.686026	2.07468	1.62654	1.98312	2.40039	1.49828	1.40669	1.65319	1.56366	1.51066	1.83802	0.938918	0.924548	1.58832	1.20233	1.48115	1.77905	2.22771	1.40037	0.357077	1.0804	0.95746	1.84773	1.1448	1.04712	1.07881	1.04231
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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