TCONS_00025637 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025637
Unique NameTCONS_00025637
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025637 ID=TCONS_00025637|Name=TCONS_00025637|organism=Clytia hemisphaerica|type=transcript|length=1492bp
GCGGATGGTAAGGGACCACCACCCCACGTGAATGGTGAACTCCACACATC
AACGTAATCGACCGATGCATTCTGCGGGATGGCGTGGCCGGCAGCGGCGC
TTGAAACAACAGGATCAATATCCATATGTGTTTTCTTGGACGGTTTAGTG
ATACATTCGATTTTTGTTGCCGTTACCGAGCGCAATTCACATTCGATACC
GGCAATTGAGACCTCACTTCCGCCTTTAAAGTTGCTTCCACTGATGACGA
TCTTTTTCCCGCCACCTGTTCCAAAGCGACGTGGAGAGACATCCGTGATG
TAAGACGTTAAAGATTCTTTGTACGTGAAAGAGTTCGACAACGTGACGGA
TTCACTTCCCTCTgttatgatgacgtcacatggaaCGTCTCCCGATTGAG
ATTCGTAATCCGGCAGCATTGACGTTAAACATTGAAGAGTTGTTCCGTAA
GTAACATCCTGGACGATGCAAGAAGCACCGCATATAGAGACACCAGTTTC
CATACTGAAGCCTTTACCTACGATCTCCACAAGGCGACCGCCTCCGTAAC
TACCCTCGTTTGAGGCGGGATTCGAAGCAGCAAGTTCGTAAGCTATCAAC
AATGGGTTTGAGAAACCTTTTCCTGCGACAAGGACTGACAAGTTGTACGT
TCCAGCAGGATAATGATCCAATGTACACGTAATTGACGTTGTGTCTACGT
TGGTAACGTTGCAAAGATCTTTTCCATCAATGTAAATCTTGTAATCTTCC
GTATTATTGGAGCCCGTATTCACGTAATCAATGGTCAACGTATCCCCATA
ACCACCATTAACAGTTGAAACACTTCGTCGTTTACGGCCGTTTTGGTTGG
TACCCATTCCCGTAATTTGAGGTGTTGATGCGTCTTCGTAAACATAATTC
CCAGTAAAAAATCCACCCGGGTAGGTGATAAGGGATGTTCCGGCTACATT
TCGTGGTGGTACCCGGCATAAAACGACGTATTGGTTGCGTTCGGTGATCT
CGCAATCGTCAATAGCGTCTCTGAAAGTGATTTTAGCATTCATGGTGTAC
GAAGCCCCGATCAATGTCAACTTCACAATATTTCCTCCGTAAATACTTCC
ACGGTTCGGTGAAATACCACGCAAACCACGGGAATAACGTGTGTATTTCT
GAACACCCGGCGTCCATAGAGCTGCACCAACGCCGTCAACAAACAAACTG
ATATCGTAATTTCCAACAACTTGGTCTGGCAGTTGACATTGGAACACTGT
CACGTTACCTCCCTGGTCATCGCGTAGAAGGATAGGACATACCCTGGAAC
CGACGTTCAACGTCAGTTTTTCCGTCACAACACTTGGTGCAAGGTTGCCA
ATAGTAACGTTAAGTTTCATAAAAGGTTGCGTGATTGTTGTTGGAGTCAA
GGATTGCAGGATGGGTGTAACTTCGTCCTTATAAAGATATTGCAGTGTTT
TTGTGTGAACTCTTGTTTGCTCATCTTCTGAATAACTACTAT
Run BLAST on NCBI

transcript from alignment at sc0000541:60394..65665-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025637 ID=TCONS_00025637|Name=TCONS_00025637|organism=Clytia hemisphaerica|type=transcript|length=5272bp|location=Sequence derived from alignment at sc0000541:60394..65665- (Clytia hemisphaerica)
GCGGATGGTAAGGGACCACCACCCCACGTGAATGGTGAACTCCACACATC
AACGTAATCGACCGATGCATTCTGCGGGATGGCGTGGCCGGCAGCGGCGC
TTGAAACAACAGGATCAATATCCATATGTGTTTTCTTGGACGGTTTAGTG
ATACATTCGATTTTTGTTGCCGTTACCGAGCGCAATTCACATTCAATACC
GGCAATTGAGACCTCACTTCCGCCTTTAAAGTTGCTTCCGCTGATGACGA
TCTTTTTGCCGCCACCTGTTCCAAAGCGACGTGGAGAGACATCCGTGATG
TAAGACGTTAAAGATTCTTTGTACGTGAAAGAGTTCGACAACGTGACGGA
TTCACTTCCCTCTGTTATGATGACGTCACATGGAACGTCTCCCGATTGAG
ATTCGTAATCCGGCAGCATTGACGTTAAACATTGAAGAGTTGTTCCGTAA
GTAACATCCTGGACGATGCAAGAAGCACCGCATATAGAGACACCAGTTTC
CATACTGAAGCCTTTACCTACGATCTCCACAAGGCGACCGCCTCCGTAAC
TACCCTCGTTTGAGGCGGGATTCGAAGCAGCAAGTTCGTAAGTTATTAAC
AATGGGTTTGAGAAACCTTTTCCTGCGACAAGGACTGACAAGTTGTACGT
TCCAGCAGGGTAATGATCCAATGTACACGTAATTGACGTAGTGTCTACTT
TGGTAACGTTGCAAAGATCTTTTCCATCAATGTAAATTTTGTAATCCTCC
GTATCATTGGAGCCCGTATTCACGTAATCAATGGTCAACGTATCCCCGTA
ACCACCATTAACAGTTGAAACACTGCGTCGTTTACGGCCGTTCTGGTTGG
TACCCATTCCCGTAATTTGAGGTGTTGACGCGTCTTCGTAAACATAATTC
CCAGTAAGATGTCCACCCGGGTAGGTGATAAGGGATGTCCCGGCTACATT
TCGTGGTGGTACCCGGCATAAAACGACGTATTGGTTGCGTTCGGTGATTT
CACAATCGTCAAGAGCGTCTCTAAAAGTGATTTTAGCATTCATGGTGTAC
GAAGCACCGATCAATGTCAACTTCACAATATTTCCTCCGTAAATACTTCC
ACGGTTTGGGGAAATACCACGTAAACCACGGGAGTAACGTGTATATTTCT
GAACACCCGGCGTCCACAGAGCTGCACCAACGCCGTCAACAAACAAACTG
ATATCGTAATTTCCAACAACTTGGTCTGGCAGTTGACATTGGAACACTGT
CACGTTACCTCCCTGGTCATCACGTAGAAGGATAGGACATACCCTGGAAC
CGACGTTCAACGTCAGTTTTTCCGTCACAACACTTGGTGCAAGGTTGCCA
ATAGTAACGTTAAGCTTCATAAAAGGTTGCGTGATTGTTGTTGGAGTCAA
GGATTGCAGGATGGGTGTAACTTCGTCCTTATAAAGATATTGTAGTGTTT
GTGTGTGAACTCTTGTTTGCTCATCTTCTGAATAACTACTATCAAACACA
GTGACTTGTTCAGTCGAAGCACTGGTGACGGAGGGAGCTTTACAGAAGAT
CTCAGTGTACGTCGAATTTATATGGCTGCAAGTTTTTGAACCAATTTTGA
CGACAAGATTATTTGAATCCAACCCGAAGCCAGTGACTTGTAAAATGTTG
CCGGCACCTGAAGTAAACGAAGATTTACATTCACAAAAATGACCTTGCTT
TGTGTTGTTACGATAAGTTATCAAGTATAGTTGCAGTGTGATGGTATAAT
AGCATAAGAGAGGCCCCCCCCCCAGCGGACCCTCAGTTCACGCAATCACG
CAATTTTTTTTCGAAATTCACGCATTCACGCAAATTTTCCCCGAGTTTCA
CACAATAGCCCGATTTTTCAGAAAATCGGAAAATGTTCGGGACAAATCGG
GGAAACATTGGAAAATCGGGAAAACTGCACAAAATCGGTGGGAAAAAAAG
GGAAATTCACGTATTCACGCACAAAATAGCCCAGATTCACACATTCACGC
AATGAAAAAGTTAATTTTCACGTTCACGCAAGTTTTTTCAATTCACGCAT
TCACGCATTTTTTTTTCAATTTTCACGGATTCACGCAACCCAAAATGCCC
ATTCACTAGACTGGAGTCGTTTATAATGCGTGTAATACTAATAATACCAA
TACTAATAATAATAATACTACGGGATTTAGTTTGTATAAACGACTGGAAG
AATCCGGTGTTCCAGCCTTATATATACAGGAGCTAGCTACGCAGAAACTT
GCGTAGCGAGAAAACAATTTATCAAGCAACAACAAACTCTCAAAACGAAA
TCAACTCAAATGAAAAACTTTCAATACACAAATCCNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNAAAAGAACCAAACCTCAGCAGCAGTTTCAATAGTCC
GTCCGGCAATTGTCTGTGTCAAAGCGATATGTTTGAAAGCTAACGGACGG
TCAATTTCGATGGTATTTCCATCATTTGTTACACCCTTGATAAAAACAGC
CTCGTTTTCGCGCAAACTTTTTGAAGTGGAGGCTATCACAATCTCGCTGC
CAACTTTCCAATCAGGAACAGGTACGGTAACATATATTTCCGTTGCGCCA
GCTTCCGCTGTTTTCGATAACCGGGTCCATGTGTTCAGAATATGTTGTCC
GTGCAAGCCTAGGTATCCGGTACGCAATGAGATAGATTTTGCGCCATACA
CGGGCAGTTCTTGTGACGTCACATTACCGTGCAATGTAATAATAGCTTTA
TGTTCGAAGCGTTTTTCTTCCGTTCCGACCATCAAGGAGCCATTCTTAGC
GATTAAAATGTGTTCTGCTTGTAGGTGAAGATCTTTGTCGTCGAAAATGA
CGGTACCACCGTCAATAAGTAGGAAAAAGAGAACAGGTGTGTCCATGTCT
AATAATAATGTTTGTCCGGTAGAGATAACCACGTATGCTCCTAAAAATCA
CAGATTAAGAAAAATGCTTTAATAATACTAAATACACGACTATTAAACAG
TGTAGAAAAACTGCTCCTTGAAGATGAGTGCCGATCTAAAGTTTTGATCG
AAATCAAATTGAATTGGCTTTCTTGAAAGGTTTTGTTTTTAAATAAGAGT
GATATCGTTTGCTTACTCATCAATTTCAATTTACAAGCTTTTTCACATTG
AATCGACACATATGTCGATTGGTCAGAAAGAGGAAAAGAAAAACAACTTT
TTGTTTATATCAGCATAATATAACAATAGGGAGACACTGTCCTAATATGA
AACATGTGTCTGCTATGAAACGGGAACACTTATGTAAAAATAAACCTTTA
AGTGGTCTTATCTGGTTATTGATCAAGGAGTGTCTCTAAACCTCCATAAT
TGTGAATAGACAGAGAGAGAGGGTAACAGTATATCTGGTGGATGATATCA
AAGACAAAAGAAATAAAACGTCACTGACCTGCGGATGGTAAGGGACCACC
ACCCCACGTGAATGGTGAACTCCACACATCAACGTAATCGACCGATGCGT
TCTGTGGGATGGCGTGGCCGGCAGCGGCGCTTGAAACAACAAGATCAATA
TCCATATGTGTTTTCTTGGACGGTTTAGTGATACATTCGATTTTTGTTGC
CGTGACCGAGCGCAATTCACATTCGATACCGGCAATTGAGACCTCACTTC
CGCCTTTAAAGTTGCTTCCACTGATGACGATCTTTTTCCCGCCACCTGTT
CCAAAGCGACGTGGAGAGACATCCGTGATGTAAGACGTTAAAGATTCTTT
GTACGTGAAAGAGTTCGACAACGTGACGGATTCACTTCCCTCTGTTATGA
TGACGTCACATGGAACGTCTCCCGATTGAGATTCGTAATCCGGCAGCATT
GACGTTAAACATTGAAGAGTTGTTCCGTAAGTAACATCCTGGACGATGCA
AGAAGCACCGCATATAGAGACACCAGTTTCCATACTGAAGCCTTTACCTA
CGATCTCCACAAGGCGACCGCCTCCGTAACTACCCTCGTTTGAGGCGGGA
TTCGAAGCAGCAAGTTCGTAAGCTATCAACAATGGGTTTGAGAAACCTTT
TCCTGCGACAAGGACTGACAAGTTGTACGTTCCAGCAGGATAATGATCCA
ATGTACACGTAATTGACGTTGTGTCTACGTTGGTAACGTTGCAAAGATCT
TTTCCATCAATGTAAATCTTGTAATCTTCCGTATTATTGGAGCCCGTATT
CACGTAATCAATGGTCAACGTATCCCCATAACCACCATTAACAGTTGAAA
CACTTCGTCGTTTACGGCCGTTTTGGTTGGTACCCATTCCCGTAATTTGA
GGTGTTGATGCGTCTTCGTAAACATAATTCCCAGTAAAAAATCCACCCGG
GTAGGTGATAAGGGATGTTCCGGCTACATTTCGTGGTGGTACCCGGCATA
AAACGACGTATTGGTTGCGTTCGGTGATCTCGCAATCGTCAATAGCGTCT
CTGAAAGTGATTTTAGCATTCATGGTGTACGAAGCCCCGATCAATGTCAA
CTTCACAATATTTCCTCCGTAAATACTTCCACGGTTCGGTGAAATACCAC
GCAAACCACGGGAATAACGTGTGTATTTCTGAACACCCGGCGTCCATAGA
GCTGCACCAACGCCGTCAACAAACAAACTGATATCGTAATTTCCAACAAC
TTGGTCTGGCAGTTGACATTGGAACACTGTCACGTTACCTCCCTGGTCAT
CGCGTAGAAGGATAGGACATACCCTGGAACCGACGTTCAACGTCAGTTTT
TCCGTCACAACACTTGGTGCAAGGTTGCCAATAGTAACGTTAAGTTTCAT
AAAAGGTTGCGTGATTGTTGTTGGAGTCAAGGATTGCAGGATGGGTGTAA
CTTCGTCCTTATAAAGATATTGCAGTGTTTTTGTGTGAACTCTTGTTTGC
TCATCTTCTGAATAACTACTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014390XLOC_014390Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025637-exon-sc0000541-1575043694:65476..65665TCONS_00025637-exon-sc0000541-1575043694:65476..65665Clytia hemisphaericaexon
TCONS_00025637-exon-sc0000541-1575043694:60394..61695TCONS_00025637-exon-sc0000541-1575043694:60394..61695Clytia hemisphaericaexon
TCONS_00025637-exon-sc0000541-1510915933:65476..65665TCONS_00025637-exon-sc0000541-1510915933:65476..65665Clytia hemisphaericaexon
TCONS_00025637-exon-sc0000541-1510915933:60394..61695TCONS_00025637-exon-sc0000541-1510915933:60394..61695Clytia hemisphaericaexon
TCONS_00025637-exon-sc0000541-1491911889:65476..65665TCONS_00025637-exon-sc0000541-1491911889:65476..65665Clytia hemisphaericaexon
TCONS_00025637-exon-sc0000541-1491911889:60394..61695TCONS_00025637-exon-sc0000541-1491911889:60394..61695Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000541supercontigsc0000541:60394..65665 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.117471	0	0	1.30476	0.0915705	0	0.140762	0.259605	0.0832256	0	0.23947	0.0723638	0.217914	0	0.245559	0.821885	0	0	0	1.52124	3.32446	0	0.890323	0.161698	0.174031	0	0.0979314	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013783Ig-like_fold
IPR002909IPT
IPR014756Ig_E-set
Blast
[Close]
BLAST of TCONS_00025637 vs. Swiss-Prot (Human)
Match: PKHL1 (Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 2.203e-28
Identity = 115/387 (29.72%), Postives = 172/387 (44.44%), Query Frame = -3 
Query:    6 ISPNRGSIYGGNIVKLTLIGASYTMNAKITFRDAIDDCEITERNQYVVLCRVPPRNVAGTS----------LITYPGGFFTGNYVYEDASTPQITGMGTNQNGRKRRSVSTVNGGYGDTLTIDYVNTGSNNTEDYKIYIDGKDLCNVTNVDTTSITCTLDHYPAGTYNLSVLVAGKGFS-NPLLIAYELAASNPASNEGSYGGGRLVEIVGKGFSMETGV-SICGASCIVQDVTYG-TTLQCLTSMLPDYESQSGDVPCDVIITEGSESVTLSNSFTYKESLTSYITDVSPRRFGTGGGKKIVISGSNFKGGSE---VSIAGIECELRSVTATKIECITKPSKKTHMDIDPV-VSSAAAGHAIPQNASVDYVDVWSSPFTWGGGPLP 1115
            +SP  GSI GG  + +T  G  Y  N  +T  D  + C+I   N   V CR P    AGT+           I YP   FT  Y  ED  TP + G+  ++ G     +      +G    I  ++   NN +           CNVT  + + + C +  +  GT+ + +    KG + + ++  Y L   N   ++GS+GGG+ + + G GF+ +  +  +CG+ C +  +    TTL C    +P       +  C+V +  G +       FTY  SLT  IT VSP+R  T GG ++ + GS F    E   ++IA  +C++     T I C+T     T     PV V     G A   NA   YVD WSS F+WGG   P
Sbjct: 1836 LSPTSGSIGGGTTLVITGNGF-YPGNTTVTIGD--EPCQIISINPNEVYCRTP----AGTTGMVDVKIFVNTIAYPPLLFT--YALED--TPFLRGIIPSR-GPPGTEIEITGSNFG--FEILEISVMINNIQ-----------CNVTMANDSVVQCIVGDHAGGTFPVMMHHKTKGSAMSTVVFEYPLNIQNINPSQGSFGGGQTMTVTGTGFNPQNSIILVCGSECAIDRLRSDYTTLLC---EIPSNNGTGAEQACEVSVVNGKDLSQSMTPFTYAVSLTPLITAVSPKRGSTAGGTRLTVVGSGFSENMEDVHITIAEAKCDVEYSNKTHIICMT--DAHTLSGWAPVCVHIRGVGMAKLDNADFLYVDAWSSNFSWGGKSPP 2192
The following BLAST results are available for this feature:
BLAST of TCONS_00025637 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PKHL12.203e-2829.72Fibrocystin-L OS=Homo sapiens GN=PKHD1L1 PE=2 SV=2[more]
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