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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025661 ID=TCONS_00025661|Name=TCONS_00025661|organism=Clytia hemisphaerica|type=transcript|length=925bp
ATTTTACTCGGAGCCGTGATACAGACAATCAACagagtttagaaatcaaa
accTCACCAAATAATCTCTGGTTTTCTGGTTCCAATCCAATCTCAACTTT
CAATGATACAAACCTTGATGATCGTGAAATCAAAGTCTTTTATGCAAAAG
AATTTGCAAGTAATATTCAAACCATCTCCAGTGTTCCAAGCTATACACCA
GAGCAAGCAATTGAGGTTTGTTACGATGAATGCAGAAAGACATGCGCCAC
TGATATTCACCCAACAAATGGATGTAATCAAATGTTCCACTGTCCTCATA
CATGTAAGATGCGAGAATTGGGTCGCTCGGTAACAGAGTGTAAAGCTTCT
TGCCAGAGAACTCCTTCTTCGGGTTGCAGTGTTTCGTACCTTACCATCAA
CTTTAATCTTTGTGGGGCATGTAATCGGGCCGAGTGTCCAACTCTCGGAC
CGGCTATCTCCGAATGTGAAAAGGGATGTGAATCATATCCTATGTAAGCG
CTGGATccccagctagcacacaacgttgtttcatcgttaatctaatgttc
acaacgtccatataacgttagatgtacgttgaaacaacgttgaaaTCTCT
GGCTATTAGTGGTAACCACAGCTGGCACTCAACTCACTTGATTTTCCCGA
CCTAAACTTTTTTTCGTGTCATAAAAAAGTCTTTGTACGCGTATAAGTTC
acatttaatttgattttaaaaattttatttgcacTCTAttcgtaaaatat
tttttttcatttaagtaTTTGCGCTATATtcgtaaaatatttatttatgc
CAAATAAAACCCACAATTCTTTCCTTCTCACTAGAGATTTAACTCAGCCT
GCGTGGAAAAGGAGCTACTAAGTTCTGCCACTTAAAACATGCAAATATAT
TGAGTGAAGCAATTGTAAGTTAAGC Run BLAST on NCBI protein sequence of TCONS_00025661-protein >TCONS_00025661-protein ID=TCONS_00025661-protein|Name=TCONS_00025661-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
FTRSRDTDNQQSLEIKTSPNNLWFSGSNPISTFNDTNLDDREIKVFYAKE
FASNIQTISSVPSYTPEQAIEVCYDECRKTCATDIHPTNGCNQMFHCPHT
CKMRELGRSVTECKASCQRTPSSGCSVSYLTINFNLCGACNRAECPTLGP
AISECEKGCESYPM Run BLAST on NCBI transcript from alignment at sc0000542:14047..16464+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025661 ID=TCONS_00025661|Name=TCONS_00025661|organism=Clytia hemisphaerica|type=transcript|length=2418bp|location=Sequence derived from alignment at sc0000542:14047..16464+ (Clytia hemisphaerica)
ATTTTACTCGGAGCCGTGATACAGACAATCAACagagtttagaaatcaaa
accTCACCAAATAATCTCTGGTTTTCTGGTTCCAATCCAATCTCAACTTT
CAATGATACAAACCTTGATGATCGTGAAATCAAAGTCTTTTATGCAAAAG
AATTTGCAAGTAATATTCAAACCATCTCCAGTGTTCCAAGCTATACACCA
GGTTGGTCAAAGATTAATAacacaattgatttttttaataagaaccaata
ctttttggctcaggctgtgcttttcttaattttttgaaattttcaggttt
CAATGTTCTTACGGTGTTCttaatacgcttagtttctttactcaaaaact
ttaaaagggtttaaaatctgttaaaataagTACTTTCTAAGTAATTTCTA
AAATCTGAGGCTCAGGATTATTCTCAATTTGGTTTTAGtctttggccaat
tttcagcctcgtattgttataaaattgttcttaaaaaaagcgtgtatttc
acgaaaattttaaaggaagaaaatacaacatttttgaagtGGGAGAGACC
CTGAACCCAAGCCCTCGTTTGCAGGATTGTTGGGTCTGCCCAAAATACGT
AAACataacccagctgacacacaacgttctttcaacgttttTATAACATT
CGttcaacgttgaaacaacgttgtgtgtcagctgcgAAACGTCGAACCAT
CTTCCTTCCATACACAAATTATATGAATAGTGATGGGTTCTATCTAATAA
CAGCATTACGTGTCTGAAGCCTTTCTATGTAGCGTTTTGATTTCCGCTAG
CAATTTTACATTTCCGTAAATCTATTCCCCGGTAATATGTTTTAGTTTGC
ATCAACATTGTTAGCCTAAAAACAGATGATATTGGTAATTCTTGCCCCAC
TGATTTGTCTCTAtgacattttaaatttaaaaaataagaagaaaactTAC
GCATTCCTCCACATTGAATTTTGAGTGATCGgtcatctttcaaaattttt
ggtatTTCAGAAGCGACTCTGCTATTTCTCAGGTTATGGAAGACTATTTT
GAAATTagacaaatatttcattttcagtttttacGAGAAACATTtccaaa
gattttcaaagatttttgcaAATTAGTCCATGGTGAGATTTGAACCACCA
ACCCGCTGCTCTACCGATTTCAAAGATTGTCAAAGGTCTTTCCGCGTATC
ACAGAAATCGTATACTTTCCGGGATTTGCAGAAATCTAGCCTATGCTAGA
CGTCACCTGCGtatttttctacgcaattataACGTCTATTCTACTTCTAC
TTTTTCCAAATGTTTGGAGCTCAGGTTTTCGGGCTAAACATGAGGCACAT
TCTGGTAAGTGTTTCAAAGAAATCATACATTTTCGGTGTTTTACATAAAT
CGTCTGTAACAAAAAGTGAcggtagtgcagtggtagagcatccggctacg
gtgcgcaaggttgtagGTCATAACCCCCAGCCGTggcataccaaagattt
ccaaaatggtactcgattcctctctgcttgatgctcagcaattaagagaa
ggatcaagggtaagtggagcaatccaggaagAAAGAGTGCAGCCGTCCGC
TACCTTTTAATCCAAAGAGGAGCCATCGGGTtacctccgactgcggtcgc
agattTACTTACTTAAATTTTCTGATATATTTTTATGTTAACAGAGCAAG
CAATTGAGGTTTGTTACGATGAATGCAGAAAGACATGCGCCACTGATATT
CACCCAACAAATGGATGTAATCAAATGTTCCACTGTCCTCATACATGTAA
GATGCGAGAATTGGGTCGCTCGGTAACAGAGTGTAAAGCTTCTTGCCAGA
GAACTCCTTCTTCGGGTTGCAGTGTTTCGTACCTTACCATCAACTTTAAT
CTTTGTGGGGCATGTAATCGGGCCGAGTGTCCAACTCTCGGACCGGCTAT
CTCCGAATGTGAAAAGGGATGTGAATCATATCCTATGTAAGCGCTGGATc
cccagctagcacacaacgttgtttcatcgttaatctaatgttcacaacgt
ccatataacgttagatgtacgttgaaacaacgttgaaaTCTCTGGCTATT
AGTGGTAACCACAGCTGGCACTCAACTCACTTGATTTTCCCGACCTAAAC
TTTTTTTCGTGTCATAAAAAAGTCTTTGTACGCGTATAAGTTCacattta
atttgattttaaaaattttatttgcacTCTAttcgtaaaatatttttttt
catttaagtaTTTGCGCTATATtcgtaaaatatttatttatgcCAAATAA
AACCCACAATTCTTTCCTTCTCACTAGAGATTTAACTCAGCCTGCGTGGA
AAAGGAGCTACTAAGTTCTGCCACTTAAAACATGCAAATATATTGAGTGA
AGCAATTGTAAGTTAAGC Coding sequence (CDS) from alignment at sc0000542:14047..16464+ >TCONS_00025661 ID=TCONS_00025661|Name=TCONS_00025661|organism=Clytia hemisphaerica|type=CDS|length=990bp|location=Sequence derived from alignment at sc0000542:14047..16464+ (Clytia hemisphaerica)
TTTACTCGGAGCCGTGATACAGACAATCAACagagtttagaaatcaaaac
cTCACCAAATAATCTCTGGTTTTCTGGTTCCAATCCAATCTCAACTTTCA
ATGATACAAACCTTGATGATCGTGAAATCAAAGTCTTTTATGCAAAAGAA
TTTGCAAGTAATATTCAAACCATCTCCAGTGTTCCAAGCTATACACCAGA
GCAAGCAATTGAGGTTTGTTACGATGAATGCAGAAAGACATGCGCCACTG
ATATTCACCCAACAAATGGATGTAATCAAATGTTCCACTGTCCTCATACA
TGTAAGATGCGAGAATTGGGTCGCTCGGTAACAGAGTGTAAAGCTTCTTG
CCAGAGAACTCCTTCTTCGGGTTGCAGTGTTTCGTACCTTACCATCAACT
TTAATCTTTGTGGGGCATGTAATCGGGCCGAGTGTCCAACTCTCGGACCG
GCTATCTCCGAATGTGAAAAGGGATGTGAATCATATCCTATGTAATTTAC
TCGGAGCCGTGATACAGACAATCAACagagtttagaaatcaaaaccTCAC
CAAATAATCTCTGGTTTTCTGGTTCCAATCCAATCTCAACTTTCAATGAT
ACAAACCTTGATGATCGTGAAATCAAAGTCTTTTATGCAAAAGAATTTGC
AAGTAATATTCAAACCATCTCCAGTGTTCCAAGCTATACACCAGAGCAAG
CAATTGAGGTTTGTTACGATGAATGCAGAAAGACATGCGCCACTGATATT
CACCCAACAAATGGATGTAATCAAATGTTCCACTGTCCTCATACATGTAA
GATGCGAGAATTGGGTCGCTCGGTAACAGAGTGTAAAGCTTCTTGCCAGA
GAACTCCTTCTTCGGGTTGCAGTGTTTCGTACCTTACCATCAACTTTAAT
CTTTGTGGGGCATGTAATCGGGCCGAGTGTCCAACTCTCGGACCGGCTAT
CTCCGAATGTGAAAAGGGATGTGAATCATATCCTATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025661-exon-sc0000542-1491911889:14047..14247 | TCONS_00025661-exon-sc0000542-1491911889:14047..14247 | Clytia hemisphaerica | exon |
| TCONS_00025661-exon-sc0000542-1510915933:14047..14247 | TCONS_00025661-exon-sc0000542-1510915933:14047..14247 | Clytia hemisphaerica | exon |
| TCONS_00025661-exon-sc0000542-1575043694:14047..14247 | TCONS_00025661-exon-sc0000542-1575043694:14047..14247 | Clytia hemisphaerica | exon |
| TCONS_00025661-exon-sc0000542-1491911889:15741..16464 | TCONS_00025661-exon-sc0000542-1491911889:15741..16464 | Clytia hemisphaerica | exon |
| TCONS_00025661-exon-sc0000542-1510915933:15741..16464 | TCONS_00025661-exon-sc0000542-1510915933:15741..16464 | Clytia hemisphaerica | exon |
| TCONS_00025661-exon-sc0000542-1575043694:15741..16464 | TCONS_00025661-exon-sc0000542-1575043694:15741..16464 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000542 | supercontig | sc0000542:14047..16464 + |
Blast
The following BLAST results are available for this feature:
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