TCONS_00025689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025689
Unique NameTCONS_00025689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025689 ID=TCONS_00025689|Name=TCONS_00025689|organism=Clytia hemisphaerica|type=transcript|length=838bp
ACGGgtgatttgaattccattgttttttaaccagaaaattcagtggggat
ggaaaaaatgacacaatattttgcagtgggtatttgcttatttgattatt
ttcagtggggacaaaaatgagagtataattttccgacggggacgatattt
tggccaatttttccagtgggaaggggtaaTATTGGGTCTCTGAGAAGTTG
AATGTCAGTTATATGATAAATTCTTTGATAAACTTTTGTTCTGTTACTGT
TTTTTGCATACCAGAAAATTCTTTAATATTTAAGTTTGGTAATACGAAAT
TAATGAAATATACACTATGCCGTTCTTCGCACCTCTGTAATGTAGAGTCC
TCCTGTGCCTCCGCGGAAGCTAAAATCCATGGAACAAAGATAATCTTCTT
CGCTCTCCAACGATTCGAGNTCTTTAATATTTAAGTTTGGTAATACGAAA
TTAATGAAATATACACTATGCCGTTCTTCGCACCTCTGTAATGTAGAGTC
CTCCTGTGCCTCCGCGGAAGCTAAAATCCATGGAACAAAGATAATCTTCT
TCGCTCTCTAACGATTCGAGTGATTCTGAATTTTCTGTTCTTTCTAGATT
TTAACAACATATATCTACACATTCCTACTACTATTTAATATTCGTTATTA
ATAAGTCATCGTCATTGTTTGTATATCGAATATCCAGCTATATCCGACTC
AAGAACTTTCGGGCATCGTCACCCTCGATTGATACGGACTTGATCGGTGA
TGATCTCTTCGTTTTCGTgtttgaaagccaaatttagaTGATAAATACCC
GTCACCATAACGTGCTTCCTCACTTTGCCAGCATTTTC
Run BLAST on NCBI

transcript from alignment at sc0000542:68156..68993

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025689 ID=TCONS_00025689|Name=TCONS_00025689|organism=Clytia hemisphaerica|type=transcript|length=838bp|location=Sequence derived from alignment at sc0000542:68156..68993 (Clytia hemisphaerica)
GAAAATGCTGGCAAAGTGAGGAAGCACGTTATGGTGACGGGTATTTATCA
tctaaatttggctttcaaacACGAAAACGAAGAGATCATCACCGATCAAG
TCCGTATCAATCGAGGGTGACGATGCCCGAAAGTTCTTGAGTCGGATATA
GCTGGATATTCGATATACAAACAATGACGATGACTTATTAATAACGAATA
TTAAATAGTAGTAGGAATGTGTAGATATATGTTGTTAAAATCTAGAAAGA
ACAGAAAATTCAGAATCACTCGAATCGTTAGAGAGCGAAGAAGATTATCT
TTGTTCCATGGATTTTAGCTTCCGCGGAGGCACAGGAGGACTCTACATTA
CAGAGGTGCGAAGAACGGCATAGTGTATATTTCATTAATTTCGTATTACC
AAACTTAAATATTAAAGANCTCGAATCGTTGGAGAGCGAAGAAGATTATC
TTTGTTCCATGGATTTTAGCTTCCGCGGAGGCACAGGAGGACTCTACATT
ACAGAGGTGCGAAGAACGGCATAGTGTATATTTCATTAATTTCGTATTAC
CAAACTTAAATATTAAAGAATTTTCTGGTATGCAAAAAACAGTAACAGAA
CAAAAGTTTATCAAAGAATTTATCATATAACTGACATTCAACTTCTCAGA
GACCCAATAttaccccttcccactggaaaaattggccaaaatatcgtccc
cgtcggaaaattatactctcatttttgtccccactgaaaataatcaaata
agcaaatacccactgcaaaatattgtgtcattttttccatccccactgaa
ttttctggttaaaaaacaatggaattcaaatcacCCGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014422XLOC_014422Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025689-exon-sc0000542-1491911889:68156..68993TCONS_00025689-exon-sc0000542-1491911889:68156..68993Clytia hemisphaericaexon
TCONS_00025689-exon-sc0000542-1510915933:68156..68993TCONS_00025689-exon-sc0000542-1510915933:68156..68993Clytia hemisphaericaexon
TCONS_00025689-exon-sc0000542-1575043694:68156..68993TCONS_00025689-exon-sc0000542-1575043694:68156..68993Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000542supercontigsc0000542:68156..68993 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.283742	0.110004	0.0639256	0.189179	0.380316	0.302571	0.0725155	0.339441	0.667877	0.706484	0.172113	0.413208	0.188395	0.404296	0.128552	0.137717	0.255267	0.130254	0	0	0.164453	0.0805255	2.0778	1.60013	2.20973	2.07842	10.559	15.6836	0.313017	0.447718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top