TCONS_00025693 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025693
Unique NameTCONS_00025693
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length424

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025693 ID=TCONS_00025693|Name=TCONS_00025693|organism=Clytia hemisphaerica|type=transcript|length=424bp
GATGTATTGAAAatgtaaaagttgaaaaaaattatgtctattcaatgaaa
taaaaatattacaatCTGATCTCTTTATAAATGGTACAACTCTTTCATAA
AGCTATAACAAAAGGTATATAATATATGCATGTCCATATCCTGCCATATC
CTGCCATATCTACCAATTTGATTTGGTGAAGAAGGTCAACAAATATAcat
acaaagtaaaaaaaaattaacctaAATTTGAACctaaatttgaagtaaaa
aatatccaaaaataatctacaatgGATTCAAAAAGAGGCTGTAACTTTGA
TAAAATGTTAATTagattatgattttttacatgtTGAAGGAAAAGATAAA
GTGGACAGTATCaagcaaattaaaaaataagataaaaattaaTATGAAAA
AATCAACCTATAACATTAGAGTCC
Run BLAST on NCBI

transcript from alignment at sc0000542:152870..153293

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025693 ID=TCONS_00025693|Name=TCONS_00025693|organism=Clytia hemisphaerica|type=transcript|length=424bp|location=Sequence derived from alignment at sc0000542:152870..153293 (Clytia hemisphaerica)
GGACTCTAATGTTATAGGTTGATTTTTTCATAttaatttttatcttattt
tttaatttgcttGATACTGTCCACTTTATCTTTTCCTTCAacatgtaaaa
aatcataatctAATTAACATTTTATCAAAGTTACAGCCTCTTTTTGAATC
cattgtagattatttttggatattttttacttcaaatttagGTTCAAATT
taggttaatttttttttactttgtatgTATATTTGTTGACCTTCTTCACC
AAATCAAATTGGTAGATATGGCAGGATATGGCAGGATATGGACATGCATA
TATTATATACCTTTTGTTATAGCTTTATGAAAGAGTTGTACCATTTATAA
AGAGATCAGattgtaatatttttatttcattgaatagacataattttttt
caacttttacatTTTCAATACATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014426XLOC_014426Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025693-exon-sc0000542-1491911889:152870..153293TCONS_00025693-exon-sc0000542-1491911889:152870..153293Clytia hemisphaericaexon
TCONS_00025693-exon-sc0000542-1510915933:152870..153293TCONS_00025693-exon-sc0000542-1510915933:152870..153293Clytia hemisphaericaexon
TCONS_00025693-exon-sc0000542-1575043694:152870..153293TCONS_00025693-exon-sc0000542-1575043694:152870..153293Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000542supercontigsc0000542:152870..153293 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.272535	0.48274	0	0	0.445058	0.879227	1.48505	0.198612	0.480173	0.861198	0	1.45902	0.737885	2.38461	0.527263	0	1.24724	0.943534	0.350824	0	0.960407	2.19862	0.484125	0.806131	0.708668	2.37176	0.450584	0.700946	0.486603	0.186602
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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