TCONS_00025847 (transcript) - C. hemisphaerica

Overview
NameTCONS_00025847
Unique NameTCONS_00025847
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length649

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00025847 ID=TCONS_00025847|Name=TCONS_00025847|organism=Clytia hemisphaerica|type=transcript|length=649bp
ctaCACTTTTCAGTTAACTCTAAAAAAACTGTTCATTAAACTCTATTTCT
TCAAGAACATGTCCATGAGCagtataaagaaaaaagtaacaCTTTTTGAA
CTTCAAAATTCCCATTTGAAATTGACATTGTGTATAATAACTGTGAGACT
TTCTTAGTCTAAGTGCATTGTCAGTTTTTATCATGTAAGGTAAACTGACC
CTTTCATCAGTCGGTGATAAATGACTTATTGAATATGGGCATTTAATCTC
CACACAAATTTTTTCACAGCAACAATCGCAAAAAAAAACACCATCAGGAC
TCGCTCCAATGTAGGGTTTTTCTTTATCCAAAAATAATCCACATTCTACA
AGCTTTGCCCCCTTGTGTTTGGTCTTCATCAACTCTAAAAAGTTTGATGC
AGCTAAAGGTTCCATATTTCGATCATATTTCAAGGCTGGGATGTTGGGGT
TGACAAACGAAAATCCAGCAACCTTTTTGGTCAAACTCCacatcaatacg
tcactttttcactgCCATTAGGATAGCTCTCAATAGTTTTCATTTCATGG
GCTTTGGAACCTGTGATAACTCCCTTCCTGTGCTGAAACCAAAGCTTATT
TGTACTTTGGCCTTTTGTTGCTGATTCAATTTTTTGGATTATCTCAGGG
Run BLAST on NCBI

protein sequence of TCONS_00025847-protein

>TCONS_00025847-protein ID=TCONS_00025847-protein|Name=TCONS_00025847-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MWSLTKKVAGFSFVNPNIPALKYDRNMEPLAASNFLELMKTKHKGAKLVE
CGLFLDKEKPYIGASPDGVFFCDCCCEKICVEIKCPYSISHLSPTDERVS
LPYMIKTDNALRLRKSHSYYTQCQFQMGILKFKKCYFFLYTAHGHVLEEI
EFNEQFF
Run BLAST on NCBI

transcript from alignment at sc0000549:10032..10680

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00025847 ID=TCONS_00025847|Name=TCONS_00025847|organism=Clytia hemisphaerica|type=transcript|length=649bp|location=Sequence derived from alignment at sc0000549:10032..10680 (Clytia hemisphaerica)
CCCTGAGATAATCCAAAAAATTGAATCAGCAACAAAAGGCCAAAGTACAA
ATAAGCTTTGGTTTCAGCACAGGAAGGGAGTTATCACAGGTTCCAAAGCC
CATGAAATGAAAACTATTGAGAGCTATCCTAATGGcagtgaaaaagtgac
gtattgatgtGGAGTTTGACCAAAAAGGTTGCTGGATTTTCGTTTGTCAA
CCCCAACATCCCAGCCTTGAAATATGATCGAAATATGGAACCTTTAGCTG
CATCAAACTTTTTAGAGTTGATGAAGACCAAACACAAGGGGGCAAAGCTT
GTAGAATGTGGATTATTTTTGGATAAAGAAAAACCCTACATTGGAGCGAG
TCCTGATGGTGTTTTTTTTTGCGATTGTTGCTGTGAAAAAATTTGTGTGG
AGATTAAATGCCCATATTCAATAAGTCATTTATCACCGACTGATGAAAGG
GTCAGTTTACCTTACATGATAAAAACTGACAATGCACTTAGACTAAGAAA
GTCTCACAGTTATTATACACAATGTCAATTTCAAATGGGAATTTTGAAGT
TCAAAAAGtgttacttttttctttatactGCTCATGGACATGTTCTTGAA
GAAATAGAGTTTAATGAACAGTTTTTTTAGAGTTAACTGAAAAGTGtag

Coding sequence (CDS) from alignment at sc0000549:10032..10680

>TCONS_00025847 ID=TCONS_00025847|Name=TCONS_00025847|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at sc0000549:10032..10680 (Clytia hemisphaerica)
atgtGGAGTTTGACCAAAAAGGTTGCTGGATTTTCGTTTGTCAACCCCAA
CATCCCAGCCTTGAAATATGATCGAAATATGGAACCTTTAGCTGCATCAA
ACTTTTTAGAGTTGATGAAGACCAAACACAAGGGGGCAAAGCTTGTAGAA
TGTGGATTATTTTTGGATAAAGAAAAACCCTACATTGGAGCGAGTCCTGA
TGGTGTTTTTTTTTGCGATTGTTGCTGTGAAAAAATTTGTGTGGAGATTA
AATGCCCATATTCAATAAGTCATTTATCACCGACTGATGAAAGGGTCAGT
TTACCTTACATGATAAAAACTGACAATGCACTTAGACTAAGAAAGTCTCA
CAGTTATTATACACAATGTCAATTTCAAATGGGAATTTTGAAGTTCAAAA
AGtgttacttttttctttatactGCTCATGGACATGTTCTTGAAGAAATA
GAGTTTAATGAACAGTTTTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_014528XLOC_014528Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025847-proteinTCONS_00025847-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00025847-exon-sc0000549-1491911889:10032..10680TCONS_00025847-exon-sc0000549-1491911889:10032..10680Clytia hemisphaericaexon
TCONS_00025847-exon-sc0000549-1510915933:10032..10680TCONS_00025847-exon-sc0000549-1510915933:10032..10680Clytia hemisphaericaexon
TCONS_00025847-exon-sc0000549-1575043694:10032..10680TCONS_00025847-exon-sc0000549-1575043694:10032..10680Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000549supercontigsc0000549:10032..10680 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0806312	0	0	0	0	0.0859244	0.310993	0.0970491	0.271786	0.168325	0.0816902	0.4833	0.482628	0.334142	2.24347	1.86711	0.363177	0.248163	0.428564	1.166	0.233877	0.34223	0	0	0	0.0772618	0	0.117994	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019080YqaJ_viral_recombinase
IPR011604Exonuc_phg/RecB_C
IPR011335Restrct_endonuc-II-like
Vocabulary: Molecular Function
TermDefinition
GO:0004518nuclease activity
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
molecular_function GO:0004518 nuclease activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00025847 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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