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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025884 ID=TCONS_00025884|Name=TCONS_00025884|organism=Clytia hemisphaerica|type=transcript|length=3476bpRun BLAST on NCBI protein sequence of TCONS_00025884-protein >TCONS_00025884-protein ID=TCONS_00025884-protein|Name=TCONS_00025884-protein|organism=Clytia hemisphaerica|type=polypeptide|length=755bp MVEPSGMINLPEEVWDKLRELQLELDEGDITQKGYDKKRARLLSQYIQKDRun BLAST on NCBI transcript from alignment at sc0000550:88277..107081- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00025884 ID=TCONS_00025884|Name=TCONS_00025884|organism=Clytia hemisphaerica|type=transcript|length=18805bp|location=Sequence derived from alignment at sc0000550:88277..107081- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000550:88277..107081- >TCONS_00025884 ID=TCONS_00025884|Name=TCONS_00025884|organism=Clytia hemisphaerica|type=CDS|length=36288bp|location=Sequence derived from alignment at sc0000550:88277..107081- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00025884 vs. Swiss-Prot (Human)
Match: DIP2C (Disco-interacting protein 2 homolog C OS=Homo sapiens GN=DIP2C PE=1 SV=2) HSP 1 Score: 505.368 bits (1300), Expect = 1.095e-154 Identity = 312/747 (41.77%), Postives = 439/747 (58.77%), Query Frame = 2
Query: 1184 INLPEEVWDKLRELQLELDEGDITQKGYDKKRARLLSQYIQKDEEDPPGDIASAVTAKHGEVKKSSSISSPRLARVKRXXXXXXXXXXXXXXRKPSNASSISKFSDAGPQVPPAIRQEAINLAIQRQKEHEEAGIALPAPTKRQSFVTRKKNTDPXXXXXXXXXXXXXXXXQQPPTNFHDTPPSSIESLNVSNTQNTPSTIVSPSVDDYSDHELSLHAYPSEPHITVVDGQTRIQDLPPPPDLT---SDILLQNEINYQKLKANAQGKGVRLQVEEDEDDNP--SRVSTKIQQLLNTLKRPKKKPMEQFF-QESDDGVEVTSPDPTAPAPEGAQSTPSVGEQLLIPDGLPNSFLDAVRRYGTSSNKAPAISVVDHHGKIIYTLLYGKLLSRSYRIAYALLHKVGNPRDGTSIMVEDRVALMYSPDDIVGFACAFYGCLFAGVVPVPIHPPVQKDDAGLQQIGFLLGSCGVHWILTSESCYKSVPREEGGSGIANFKGWPKVNWFLTD--NLGKPQRDWHPPHMSKDKKMAAYIEHTVDKDGSALGVVVTRDSMFMHTVALTQACGYTEGEVMVSLVDFKKEIGLWHSIFASVLNGVHVIFVPPAVQATTSAIWLPLVTRQKATCCIVSSKDLHLSLHTGRDFKDVNLSTLRMLMLADRANPWSLAACDSFVNTFEGKGLRKEVVCPCAHSCSGLTVAIRRPGNPGSTATGRGVLSLTGLSYGVVRVDKEGSLTALTLQDCGMVIPGG 3400
+ LP EV +L EL+LEL EGDITQKGY+KKR++L+ Y+ + PP + + V SS+ +R R R+ S + SD + EA+ A+ + KE + +A+P P+KR+S V + + D S+ + + Q + TP SS S+N+ + + I + S + + V QT I++ PPD+T S+ +Q E + K ++ E D P SRVS KIQQL+NTLKRPK+ P+ +FF + ++ +EV PDP P PEGAQ GEQL + P S A++R+GT S KAP ++ +D +GK +Y L YGKL +RS ++AY++LHK+G ++ + DRVAL++ +D F AFYGCL A VVPVPI P+ + DAG QQIGFLLGSCGV LTS++C+K +P+ G I FKGWPK+ WF+T+ +L KP RDW P H+ AYIE+ KDGS LGV VTR ++ H ALTQACGYTE E +V+++DFKK++GLWH I SV+N +HVI +P ++ W+ V + KA V S+D+H +L RD +D+NLS+LRML++AD ANPWS+++CD+F+N F+ KGLR+EV+CPCA S LTVAIRRP + + GRGVLS+ GL+YGV+RVD E L+ LT+QD G+V+PG
Sbjct: 9 MALPLEVRARLAELELELSEGDITQKGYEKKRSKLIGAYLPQ----PPRVDQALPQERRAPVTPSSA------SRYHR--------------RRSSGSRDERYRSD--------VHTEAVQAALAKHKERK---MAVPMPSKRRSLVV-QTSMDAYTPPDTSSGSEDEGSVQ---GDSQGTPTSSQGSINMEHWIS--QAIHGSTTSTTSSSSTQSGGSGAAHRLADVMAQTHIENHSAPPDVTTYTSEHSIQVERPQGSTGSRTAPKYGNAELMETGDGVPVSSRVSAKIQQLVNTLKRPKRPPLREFFVDDFEELLEVQQPDPNQPKPEGAQMLAMRGEQLGVVTNWPPSLEAALQRWGTISPKAPCLTTMDTNGKPLYILTYGKLWTRSMKVAYSILHKLGTKQEPM-VRPGDRVALVFPNNDPAAFMAAFYGCLLAEVVPVPIEVPLTRKDAGSQQIGFLLGSCGVTVALTSDACHKGLPKSPTGE-IPQFKGWPKLLWFVTESKHLSKPPRDWFP-HIKDANNDTAYIEYKTCKDGSVLGVTVTRTALLTHCQALTQACGYTEAETIVNVLDFKKDVGLWHGILTSVMNMMHVISIPYSLMKVNPLSWIQKVCQYKAKVACVKSRDMHWALVAHRDQRDINLSSLRMLIVADGANPWSISSCDAFLNVFQSKGLRQEVICPCASSPEALTVAIRRPTDDSNQPPGRGVLSMHGLTYGVIRVDSEEKLSVLTVQDVGLVMPGA 711 HSP 2 Score: 89.7373 bits (221), Expect = 7.796e-18 Identity = 99/385 (25.71%), Postives = 171/385 (44.42%), Query Frame = 2
Query: 2276 SVVDHHGKIIYTLLYGKLLSRSYRIAYALLHKVGNPRDGTSIMVEDRVALMYSPDDIVGFACAFYGCLFAGVVPVPIHPPVQKDDA-GLQQIGFLLGSCGVHWILTSESCYKSVPREEGGSGIANFKGWPKVNWFLTDNLGKPQRDWHPPHMSK--DKKMAAYIEHTVDKDGSALGVVVTR--DSMFMHTVALTQACGYTEGEVMVSLVDFKKEIGLWHSIFASVLNGVHVIFVPPAVQATTSAIWLPLVTRQKA--TCCIVSSKDLHL----SLHTGRDFKDVNLSTLRMLMLADRANPWSLAACDSFVNTFEGKGLRKEVVCPCAHSCSGLTVAIRRPGNPGSTATGRGVLSLTGLSYGVVRVDKEGSLTALTLQDCGMVIPG 3397
++++ G I +L +L R+ +IA L+ + G+ +DG D VAL+Y P + AFYGCL+AG VP+ + PP ++ A L + ++ ++T++ K + E + + + + WP + TD+L K + P + K + AY++ +V G GV ++ S F ++ L Q Y EV + L D +G SV +G I +PP+ T A+WL V++ K T C S +L S + ++LS +R ++ P +A SF F+ GL V L + ++ P T + + L + VR+ + GS +L L + G ++PG
Sbjct: 990 TLLNCRGAIANSLTCVQLHKRAEKIAVMLMER-GHLQDG------DHVALVYPPG--IDLIAAFYGCLYAGCVPITVRPPHPQNIATTLPTVKMIVEVSRSACLMTTQLICKLLRSREAAAAV-DVRTWPLI--LDTDDLPKKR----PAQICKPCNPDTLAYLDFSVSTTGMLAGVKMSHAATSAFCRSIKL-QCELYPSREVAICL-DPYCGLGFVLWCLCSVYSGHQSILIPPSELETNPALWLLAVSQYKVRDTFCSYSVMELCTKGLGSQTESLKARGLDLSRVRTCVVVAEERP-RIALTQSFSKLFKDLGLHPRAVSTSFGCRVNLAICLQGTSGPDPTTV---YVDMRALRHDRVRLVERGSPHSLPLMESGKILPG 1352 The following BLAST results are available for this feature:
BLAST of TCONS_00025884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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