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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00025904 ID=TCONS_00025904|Name=TCONS_00025904|organism=Clytia hemisphaerica|type=transcript|length=1509bp
gaataatggagcataAGGAATCATAAGAAGAACGTCTCGAATGGCTAGCG
TCAATAGTAGATTACTTACAGATCTGATTCATTCAAAACCTGATAATTAC
GCTTATTCATCTTCAGTTCGATCGGTTTCGCTTCAATCAGCGTGTGTTTT
CGAAGCACCAAAAGTACAAGTGCAGCCAATACAACAACGATAGTCACAAT
ACATTGTACATAAAGATAATCGACAATGAAACCAGTAACCAGGCTGGATG
ATATACAGGCTAATGCACTAGCCGCACGACGTACAGCTTCACCGAAAGCT
TGAACTTCTGACGGAATCATTTTGGCTAGGATAGTTTTAACAAAGACTTG
CTCAACGCACCAACATACTCCAAGAGTTAGCACAAAAATGGAAAGTAATA
CAAGCCCTAGAGTAGGATGCTTGTCTTTCAAGATACTGACGATCAGCAAT
AAACACGTGCTACATACAAACACGCACAATCCAGCAATTAAGAAATAAAA
ATCATTCAATCTCTCACTTGTCTTTTTAATGACTTGTAACACGATCATAA
ACAATAGACCAGTTGCTAAAAACATCCCTCCAACGTATTGAGTAGTTTGT
TTATAGTAAATGGCAGATATGATTGGAAATGAAACGTCTAAGAAAGCCAC
TATGCTGTACGACATCAGAAACCCAATGAAAATCAGTAATAcgaaatcaa
tatttttgaataaagtaTATTGTGAAAATTTCCTTTGCACGTGTTCTTTT
GTATCGTCTTTTTCTTTCAAGTCATATTCCTTTGACAGATTACTTGTTTT
TACAATGACGAAAGCCAAGATGCCACTAAACAATATAGCCATCAGAATTC
CAGGGAAATTACCATAGCTTACTCGAAAACCATAAAACTCGAAAtcaata
tatttgaaaataatgttgaGTCCCGGTGAAAGAACAAAAGCTCCTGAAAA
GCATGCTACCAAGTTCGCTAAACGTTTCGTACATTCTTCTCTTGGGAATA
CGCGAGCAACTTCAGCTGTTATTAACGACATATTAACATCACCGAGTCCT
TGTATAATTCTTGCTACGATCGGGAAATATACTGAAGTATATATGATGTA
TAAACAGCTCCCGATGATTTCTAAGATAACGAGCGCGATCATGATTTGTT
TTGTATTCCTGGTACGATCTACATAAACTGATAATGATAAGCTTCCAAAG
ATAGATGCGACGTAGTAAATAGCCAATGAAAGATCGTAAAATGCGGTCAC
GTGAtcagttttgatgacgtcattgaggTAGAAAAATAGTGACGGAATGA
TCATAGAGTATTCGGCGCCAAGGAAAACGGCTAAAACACAATAAATACGA
TATGTGGTtttgcgtttagcctgccatgAGGAGAGCTGAGTGTTCTCTTG
AGGTGTTGGAGTGTCAATGAGTAATGGGTCAGCACTTGCAATTGCATTGT
GGTTATCATTGACTTTACGACTCATGCTTCTTCAGTATCCAgtgcaaatt
caaattttc Run BLAST on NCBI protein sequence of TCONS_00025904-protein >TCONS_00025904-protein ID=TCONS_00025904-protein|Name=TCONS_00025904-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
MSRKVNDNHNAIASADPLLIDTPTPQENTQLSSWQAKRKTTYRIYCVLAV
FLGAEYSMIIPSLFFYLNDVIKTDHVTAFYDLSLAIYYVASIFGSLSLSV
YVDRTRNTKQIMIALVILEIIGSCLYIIYTSVYFPIVARIIQGLGDVNMS
LITAEVARVFPREECTKRLANLVACFSGAFVLSPGLNIIFKYIDFEFYGF
RVSYGNFPGILMAILFSGILAFVIVKTSNLSKEYDLKEKDDTKEHVQRKF
SQYTLFKNIDFVLLIFIGFLMSYSIVAFLDVSFPIISAIYYKQTTQYVGG
MFLATGLLFMIVLQVIKKTSERLNDFYFLIAGLCVFVCSTCLLLIVSILK
DKHPTLGLVLLSIFVLTLGVCWCVEQVFVKTILAKMIPSEVQAFGEAVRR
AASALACISSSLVTGFIVDYLYVQCIVTIVVVLAALVLLVLRKHTLIEAK
PIELKMNKRNYQVLNESDL Run BLAST on NCBI transcript from alignment at sc0000550:46355..47863 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00025904 ID=TCONS_00025904|Name=TCONS_00025904|organism=Clytia hemisphaerica|type=transcript|length=1509bp|location=Sequence derived from alignment at sc0000550:46355..47863 (Clytia hemisphaerica)
gaaaatttgaatttgcacTGGATACTGAAGAAGCATGAGTCGTAAAGTCA
ATGATAACCACAATGCAATTGCAAGTGCTGACCCATTACTCATTGACACT
CCAACACCTCAAGAGAACACTCAGCTCTCCTcatggcaggctaaacgcaa
aACCACATATCGTATTTATTGTGTTTTAGCCGTTTTCCTTGGCGCCGAAT
ACTCTATGATCATTCCGTCACTATTTTTCTAcctcaatgacgtcatcaaa
actgaTCACGTGACCGCATTTTACGATCTTTCATTGGCTATTTACTACGT
CGCATCTATCTTTGGAAGCTTATCATTATCAGTTTATGTAGATCGTACCA
GGAATACAAAACAAATCATGATCGCGCTCGTTATCTTAGAAATCATCGGG
AGCTGTTTATACATCATATATACTTCAGTATATTTCCCGATCGTAGCAAG
AATTATACAAGGACTCGGTGATGTTAATATGTCGTTAATAACAGCTGAAG
TTGCTCGCGTATTCCCAAGAGAAGAATGTACGAAACGTTTAGCGAACTTG
GTAGCATGCTTTTCAGGAGCTTTTGTTCTTTCACCGGGACtcaacattat
tttcaaatatattgaTTTCGAGTTTTATGGTTTTCGAGTAAGCTATGGTA
ATTTCCCTGGAATTCTGATGGCTATATTGTTTAGTGGCATCTTGGCTTTC
GTCATTGTAAAAACAAGTAATCTGTCAAAGGAATATGACTTGAAAGAAAA
AGACGATACAAAAGAACACGTGCAAAGGAAATTTTCACAATAtactttat
tcaaaaatattgatttcgTATTACTGATTTTCATTGGGTTTCTGATGTCG
TACAGCATAGTGGCTTTCTTAGACGTTTCATTTCCAATCATATCTGCCAT
TTACTATAAACAAACTACTCAATACGTTGGAGGGATGTTTTTAGCAACTG
GTCTATTGTTTATGATCGTGTTACAAGTCATTAAAAAGACAAGTGAGAGA
TTGAATGATTTTTATTTCTTAATTGCTGGATTGTGCGTGTTTGTATGTAG
CACGTGTTTATTGCTGATCGTCAGTATCTTGAAAGACAAGCATCCTACTC
TAGGGCTTGTATTACTTTCCATTTTTGTGCTAACTCTTGGAGTATGTTGG
TGCGTTGAGCAAGTCTTTGTTAAAACTATCCTAGCCAAAATGATTCCGTC
AGAAGTTCAAGCTTTCGGTGAAGCTGTACGTCGTGCGGCTAGTGCATTAG
CCTGTATATCATCCAGCCTGGTTACTGGTTTCATTGTCGATTATCTTTAT
GTACAATGTATTGTGACTATCGTTGTTGTATTGGCTGCACTTGTACTTTT
GGTGCTTCGAAAACACACGCTGATTGAAGCGAAACCGATCGAACTGAAGA
TGAATAAGCGTAATTATCAGGTTTTGAATGAATCAGATCTGTAAGTAATC
TACTATTGACGCTAGCCATTCGAGACGTTCTTCTTATGATTCCTtatgct
ccattattc Coding sequence (CDS) from alignment at sc0000550:46355..47863 >TCONS_00025904 ID=TCONS_00025904|Name=TCONS_00025904|organism=Clytia hemisphaerica|type=CDS|length=1410bp|location=Sequence derived from alignment at sc0000550:46355..47863 (Clytia hemisphaerica)
ATGAGTCGTAAAGTCAATGATAACCACAATGCAATTGCAAGTGCTGACCC
ATTACTCATTGACACTCCAACACCTCAAGAGAACACTCAGCTCTCCTcat
ggcaggctaaacgcaaaACCACATATCGTATTTATTGTGTTTTAGCCGTT
TTCCTTGGCGCCGAATACTCTATGATCATTCCGTCACTATTTTTCTAcct
caatgacgtcatcaaaactgaTCACGTGACCGCATTTTACGATCTTTCAT
TGGCTATTTACTACGTCGCATCTATCTTTGGAAGCTTATCATTATCAGTT
TATGTAGATCGTACCAGGAATACAAAACAAATCATGATCGCGCTCGTTAT
CTTAGAAATCATCGGGAGCTGTTTATACATCATATATACTTCAGTATATT
TCCCGATCGTAGCAAGAATTATACAAGGACTCGGTGATGTTAATATGTCG
TTAATAACAGCTGAAGTTGCTCGCGTATTCCCAAGAGAAGAATGTACGAA
ACGTTTAGCGAACTTGGTAGCATGCTTTTCAGGAGCTTTTGTTCTTTCAC
CGGGACtcaacattattttcaaatatattgaTTTCGAGTTTTATGGTTTT
CGAGTAAGCTATGGTAATTTCCCTGGAATTCTGATGGCTATATTGTTTAG
TGGCATCTTGGCTTTCGTCATTGTAAAAACAAGTAATCTGTCAAAGGAAT
ATGACTTGAAAGAAAAAGACGATACAAAAGAACACGTGCAAAGGAAATTT
TCACAATAtactttattcaaaaatattgatttcgTATTACTGATTTTCAT
TGGGTTTCTGATGTCGTACAGCATAGTGGCTTTCTTAGACGTTTCATTTC
CAATCATATCTGCCATTTACTATAAACAAACTACTCAATACGTTGGAGGG
ATGTTTTTAGCAACTGGTCTATTGTTTATGATCGTGTTACAAGTCATTAA
AAAGACAAGTGAGAGATTGAATGATTTTTATTTCTTAATTGCTGGATTGT
GCGTGTTTGTATGTAGCACGTGTTTATTGCTGATCGTCAGTATCTTGAAA
GACAAGCATCCTACTCTAGGGCTTGTATTACTTTCCATTTTTGTGCTAAC
TCTTGGAGTATGTTGGTGCGTTGAGCAAGTCTTTGTTAAAACTATCCTAG
CCAAAATGATTCCGTCAGAAGTTCAAGCTTTCGGTGAAGCTGTACGTCGT
GCGGCTAGTGCATTAGCCTGTATATCATCCAGCCTGGTTACTGGTTTCAT
TGTCGATTATCTTTATGTACAATGTATTGTGACTATCGTTGTTGTATTGG
CTGCACTTGTACTTTTGGTGCTTCGAAAACACACGCTGATTGAAGCGAAA
CCGATCGAACTGAAGATGAATAAGCGTAATTATCAGGTTTTGAATGAATC
AGATCTGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00025904-exon-sc0000550-1491911889:46355..47863 | TCONS_00025904-exon-sc0000550-1491911889:46355..47863 | Clytia hemisphaerica | exon |
| TCONS_00025904-exon-sc0000550-1510915933:46355..47863 | TCONS_00025904-exon-sc0000550-1510915933:46355..47863 | Clytia hemisphaerica | exon |
| TCONS_00025904-exon-sc0000550-1575043694:46355..47863 | TCONS_00025904-exon-sc0000550-1575043694:46355..47863 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000550 | supercontig | sc0000550:46355..47863 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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